Wall clock time and date at job start Tue Mar 31 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34511 * 125.79057 * 2 1 4 4 C 1.41388 * 106.84043 * 180.02562 * 3 2 1 5 5 C 1.34507 * 106.84066 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.79074 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47178 * 89.99721 * 6 5 4 8 8 C 1.46901 * 111.00024 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47409 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47406 * 59.99712 * 9 8 7 11 11 O 1.42905 * 109.46872 * 299.99796 * 9 8 7 12 12 C 1.52998 * 109.47318 * 179.97438 * 9 8 7 13 13 N 1.46906 * 109.47197 * 182.15693 * 12 9 8 14 14 C 1.46901 * 110.99925 * 199.76710 * 13 12 9 15 15 C 1.46892 * 110.99774 * 75.81142 * 13 12 9 16 16 C 1.50701 * 109.46993 * 189.99771 * 15 13 12 17 17 H 1.07994 * 120.00328 * 0.02562 * 16 15 13 18 18 C 1.37887 * 119.99865 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00027 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99584 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47258 * 90.00647 * 20 18 16 22 22 H 1.48502 * 109.47121 * 210.00245 * 20 18 16 23 23 H 1.48497 * 109.47375 * 330.00253 * 20 18 16 24 24 O 1.34308 * 108.42471 * 0.25746 * 5 4 3 25 25 H 1.09003 * 109.46821 * 90.00032 * 1 2 3 26 26 H 1.09001 * 109.47253 * 209.99785 * 1 2 3 27 27 H 1.08998 * 109.47352 * 330.00061 * 1 2 3 28 28 H 1.07994 * 126.58123 * 0.05609 * 3 2 1 29 29 H 1.08002 * 126.57948 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.46941 * 329.99425 * 6 5 4 31 31 H 1.08997 * 109.47222 * 210.00036 * 6 5 4 32 32 H 1.00899 * 111.00258 * 56.05122 * 7 6 5 33 33 H 1.08995 * 109.47180 * 59.99940 * 8 7 6 34 34 H 1.09002 * 109.47373 * 300.00035 * 8 7 6 35 35 H 0.96701 * 114.00201 * 299.99769 * 11 9 8 36 36 H 1.09000 * 109.47245 * 62.15773 * 12 9 8 37 37 H 1.09002 * 109.47237 * 302.15962 * 12 9 8 38 38 H 1.08999 * 109.47031 * 291.01429 * 14 13 12 39 39 H 1.09002 * 109.47006 * 51.00954 * 14 13 12 40 40 H 1.08993 * 109.46940 * 171.01218 * 14 13 12 41 41 H 1.08994 * 109.47530 * 310.00139 * 15 13 12 42 42 H 1.09008 * 109.47253 * 70.00012 * 15 13 12 43 43 H 0.97000 * 119.99606 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6380 -0.0019 7 7 5.1567 -1.9396 1.3829 8 6 6.3158 -2.8412 1.4218 9 6 6.6871 -3.1323 2.8772 10 1 5.8429 -3.6039 3.3803 11 8 7.0131 -1.9086 3.5394 12 6 7.8939 -4.0718 2.9177 13 7 8.2184 -4.3924 4.3141 14 6 9.5980 -4.8823 4.4349 15 6 7.2646 -5.3634 4.8666 16 6 7.4739 -5.4824 6.3542 17 1 8.2386 -4.8952 6.8407 18 6 6.6882 -6.3404 7.0945 19 7 5.7566 -7.0551 6.5022 20 14 6.9472 -6.4873 8.9386 21 1 6.0911 -5.4968 9.6392 22 1 6.5835 -7.8572 9.3819 23 1 8.3729 -6.2250 9.2607 24 8 2.2924 -1.0895 -0.0072 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9666 2.1203 0.0008 29 1 4.5213 1.2432 -0.0004 30 1 5.6041 -1.1585 -0.5153 31 1 4.5107 -2.5631 -0.5164 32 1 4.3803 -2.3259 1.8988 33 1 7.1598 -2.3698 0.9184 34 1 6.0671 -3.7748 0.9171 35 1 7.7572 -1.4338 3.1446 36 1 8.7490 -3.5853 2.4485 37 1 7.6579 -4.9899 2.3795 38 1 9.6775 -5.8632 3.9663 39 1 10.2753 -4.1868 3.9391 40 1 9.8649 -4.9604 5.4888 41 1 6.2472 -5.0263 4.6686 42 1 7.4230 -6.3350 4.3985 43 1 5.2042 -7.6590 7.0229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601968740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:21 Heat of formation + Delta-G solvation = -58.201841 kcal Electronic energy + Delta-G solvation = -21722.652705 eV Core-core repulsion = 18382.461674 eV Total energy + Delta-G solvation = -3340.191031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.52209 -39.53561 -37.53733 -36.26540 -34.60728 -34.10910 -33.02872 -31.22326 -29.46888 -28.79961 -26.70398 -25.37298 -24.18833 -22.89602 -22.68868 -21.72024 -21.07183 -18.61239 -17.99671 -17.31173 -17.29475 -16.80738 -16.68744 -16.23470 -15.77797 -15.70698 -15.36569 -14.97749 -14.87055 -14.19243 -14.11163 -13.94284 -13.73449 -13.72808 -13.39529 -13.24052 -13.09738 -12.96791 -12.82308 -12.56223 -12.54585 -12.44865 -12.32654 -12.14062 -11.53049 -11.32815 -10.83353 -10.69584 -10.61195 -9.53007 -9.19903 -8.93852 -8.21404 -6.30673 0.70964 1.39259 1.41842 1.52265 1.66643 1.97453 2.39810 2.99350 3.11423 3.46510 3.66841 3.78765 3.92803 4.01320 4.13813 4.17016 4.31772 4.35951 4.45747 4.48704 4.58232 4.59999 4.63517 4.69722 4.75131 4.79226 4.86504 4.91630 5.07788 5.10889 5.11393 5.22959 5.28727 5.30400 5.64483 5.65296 5.89333 6.06306 6.12791 6.25871 6.34982 6.65960 6.85392 7.16339 7.38780 8.89820 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.003022 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.645077 B = 9264.618704 C =10195.293479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.028 4.028 3 C -0.227 4.227 4 C -0.194 4.194 5 C -0.036 4.036 6 C 0.145 3.855 7 N -0.684 5.684 8 C 0.041 3.959 9 C 0.126 3.874 10 H 0.055 0.945 11 O -0.553 6.553 12 C 0.027 3.973 13 N -0.544 5.544 14 C 0.043 3.957 15 C 0.209 3.791 16 C -0.523 4.523 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.275 1.275 22 H -0.280 1.280 23 H -0.263 1.263 24 O -0.200 6.200 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.122 0.878 31 H 0.049 0.951 32 H 0.337 0.663 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.379 0.621 36 H 0.101 0.899 37 H 0.028 0.972 38 H 0.008 0.992 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.002 0.998 42 H -0.040 1.040 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 14.303 -17.454 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.246 4.246 4 C -0.213 4.213 5 C -0.086 4.086 6 C 0.017 3.983 7 N -0.315 5.315 8 C -0.088 4.088 9 C 0.065 3.935 10 H 0.073 0.927 11 O -0.358 6.358 12 C -0.103 4.103 13 N -0.268 5.268 14 C -0.105 4.105 15 C 0.083 3.917 16 C -0.561 4.561 17 H 0.079 0.921 18 C -0.198 4.198 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.187 1.187 24 O -0.098 6.098 25 H 0.114 0.886 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.185 0.815 29 H 0.178 0.822 30 H 0.140 0.860 31 H 0.067 0.933 32 H 0.154 0.846 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.227 0.773 36 H 0.119 0.881 37 H 0.046 0.954 38 H 0.026 0.974 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.020 0.980 42 H -0.023 1.023 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.085 14.691 -16.712 22.623 hybrid contribution -0.074 -1.837 -0.041 1.839 sum -4.159 12.854 -16.753 21.522 Atomic orbital electron populations 1.20476 0.82811 1.04997 1.04642 1.23212 0.95543 0.83889 1.05142 1.21931 0.92617 1.00400 1.09641 1.21856 0.98998 0.93882 1.06608 1.22545 0.82773 0.95394 1.07852 1.20401 0.91360 0.96144 0.90366 1.60450 1.09453 1.49127 1.12458 1.22584 0.94742 0.95217 0.96261 1.21642 0.95605 0.84808 0.91438 0.92653 1.86645 1.55254 1.35247 1.58643 1.22809 0.99440 0.98370 0.89631 1.61915 1.03211 1.44555 1.17129 1.22214 0.89379 0.97344 1.01601 1.19390 0.90840 0.87067 0.94403 1.21487 1.18142 1.22884 0.93568 0.92143 1.25928 0.94783 0.95200 1.03930 1.70081 1.22239 1.27491 1.37818 0.85389 0.78923 0.77345 0.79012 1.20058 1.20559 1.18742 1.83942 1.17175 1.36449 1.72184 0.88618 0.90622 0.87491 0.81483 0.82160 0.85976 0.93317 0.84605 0.87718 0.93799 0.77323 0.88092 0.95385 0.97390 0.89689 0.92873 0.97985 1.02269 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.42 71.24 0.74 -0.20 16 2 C -0.03 -0.60 7.32 24.83 0.18 -0.42 16 3 C -0.23 -4.66 10.81 22.19 0.24 -4.43 16 4 C -0.19 -4.31 10.81 22.19 0.24 -4.07 16 5 C -0.04 -0.87 6.83 24.83 0.17 -0.70 16 6 C 0.15 2.96 6.22 85.56 0.53 3.49 16 7 N -0.68 -17.03 6.36 -517.94 -3.29 -20.32 16 8 C 0.04 0.97 5.35 86.30 0.46 1.43 16 9 C 0.13 4.08 3.25 30.59 0.10 4.18 16 10 H 0.06 2.29 6.73 -2.39 -0.02 2.28 16 11 O -0.55 -18.80 13.11 -148.98 -1.95 -20.75 16 12 C 0.03 0.88 4.65 86.30 0.40 1.29 16 13 N -0.54 -23.72 4.59 -927.06 -4.25 -27.97 16 14 C 0.04 1.63 9.31 127.69 1.19 2.82 16 15 C 0.21 11.49 4.55 85.56 0.39 11.88 16 16 C -0.52 -30.75 8.58 25.60 0.22 -30.53 16 17 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 18 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 19 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 20 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 24 O -0.20 -5.23 10.65 -2.61 -0.03 -5.25 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.34 9.66 8.72 -89.70 -0.78 8.88 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.38 9.36 9.05 -74.06 -0.67 8.69 16 36 H 0.10 2.57 7.75 -2.39 -0.02 2.55 16 37 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 38 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 39 H 0.08 2.50 7.85 -2.39 -0.02 2.48 16 40 H 0.05 2.20 7.01 -2.39 -0.02 2.18 16 41 H 0.00 0.13 6.60 -2.39 -0.02 0.11 16 42 H -0.04 -2.38 8.07 -2.38 -0.02 -2.40 16 43 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -73.91 358.77 -2.34 -76.24 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.45 Total: 22.66 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 5.33 Total: -14.83 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -7.26 Total: -105.78 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.98 Total: -26.01 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.91 -2.34 -76.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601968740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.041 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds