Wall clock time and date at job start Tue Mar 31 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00522 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47438 * 119.99718 * 9 7 5 12 12 H 1.48505 * 109.46997 * 239.99833 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 14 14 N 1.46506 * 109.47075 * 59.99940 * 13 2 1 15 15 C 1.34777 * 120.00264 * 179.97438 * 14 13 2 16 16 O 1.21284 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99757 * 180.02562 * 15 14 13 18 18 C 1.53001 * 110.43850 * 300.69994 * 17 15 14 19 19 C 1.54633 * 110.48429 * 178.16435 * 17 15 14 20 20 C 1.54834 * 101.60249 * 266.07941 * 19 17 15 21 21 N 1.46766 * 105.49281 * 334.56948 * 20 19 17 22 22 C 1.34419 * 111.30267 * 17.03573 * 21 20 19 23 23 O 1.21277 * 124.93886 * 179.63068 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 0.96992 * 120.00310 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 35 35 H 0.96999 * 119.99689 * 0.02562 * 14 13 2 36 36 H 1.09006 * 109.46479 * 59.30146 * 18 17 15 37 37 H 1.08994 * 109.47207 * 179.29740 * 18 17 15 38 38 H 1.08996 * 109.47247 * 299.30379 * 18 17 15 39 39 H 1.08995 * 110.97157 * 24.23566 * 19 17 15 40 40 H 1.08998 * 110.97110 * 148.00265 * 19 17 15 41 41 H 1.08993 * 110.22071 * 215.56799 * 20 19 17 42 42 H 1.09006 * 110.32645 * 93.61802 * 20 19 17 43 43 H 0.97007 * 124.34302 * 197.01504 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5377 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4817 3.7319 8 7 2.6272 -1.5510 3.8527 9 14 1.2479 0.3984 5.2572 10 1 0.4226 1.5649 4.8530 11 1 0.4236 -0.5355 6.0656 12 1 2.4027 0.8659 6.0655 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6696 16 8 2.5750 -1.4769 -3.7808 17 6 1.3758 0.2200 -4.8999 18 6 -0.1539 0.2481 -4.9141 19 6 1.9162 -0.4630 -6.1777 20 6 3.1866 0.3743 -6.4647 21 7 2.9400 1.6842 -5.8504 22 6 1.9318 1.6254 -4.9633 23 8 1.5264 2.5630 -4.3095 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 2.8615 -1.8824 4.7336 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2493 35 1 0.9943 0.7582 -2.3564 36 1 -0.5160 0.7612 -4.0231 37 1 -0.4994 0.7759 -5.8029 38 1 -0.5360 -0.7726 -4.9260 39 1 2.1690 -1.5056 -5.9856 40 1 1.2010 -0.3810 -6.9961 41 1 3.3313 0.4830 -7.5395 42 1 4.0601 -0.0958 -6.0127 43 1 3.4405 2.4888 -6.0577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602157124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:57 Heat of formation + Delta-G solvation = -93.822053 kcal Electronic energy + Delta-G solvation = -23226.434760 eV Core-core repulsion = 19884.699121 eV Total energy + Delta-G solvation = -3341.735639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.33153 -38.99061 -37.23223 -36.37695 -33.85851 -33.17013 -31.98427 -29.03504 -27.13782 -26.46098 -26.40885 -25.54526 -23.29987 -22.19178 -21.53700 -19.56375 -18.27007 -17.58009 -17.34266 -16.32510 -15.72287 -15.56398 -15.10936 -14.74380 -14.49642 -14.18300 -13.89963 -13.74783 -13.50033 -13.08323 -12.87862 -12.73234 -12.59605 -12.44675 -12.10381 -12.04983 -11.64125 -11.40750 -11.12337 -10.99341 -10.81050 -10.61269 -10.39092 -10.22470 -10.14670 -9.85316 -9.77231 -9.39777 -9.14391 -8.89575 -8.76512 -8.34518 -5.98485 -3.99400 2.16910 2.64093 3.06804 3.31743 3.37928 3.40095 3.43436 3.95877 4.11894 4.44489 4.47496 4.73008 4.80432 5.02523 5.21360 5.37294 5.38820 5.41862 5.52850 5.59310 5.64147 5.75499 5.80044 5.83821 6.22103 6.26038 6.28757 6.42883 6.44686 6.55783 6.67607 6.68120 6.77608 7.09484 7.11318 7.15176 7.65015 7.67856 7.77758 7.94189 8.00584 8.29139 8.43159 9.05593 9.63798 11.13083 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.003731 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.138327 B = 7503.499633 C = 7707.529001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.710 5.710 15 C 0.528 3.472 16 O -0.537 6.537 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.117 4.117 20 C 0.099 3.901 21 N -0.728 5.728 22 C 0.532 3.468 23 O -0.517 6.517 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.032 0.968 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.259 0.741 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.405 0.595 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 3.824 -22.214 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.361 5.361 15 C 0.311 3.689 16 O -0.415 6.415 17 C -0.128 4.128 18 C -0.186 4.186 19 C -0.155 4.155 20 C -0.025 4.025 21 N -0.384 5.384 22 C 0.316 3.684 23 O -0.392 6.392 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.071 3.400 -21.751 22.113 hybrid contribution -0.184 1.093 0.849 1.396 sum -2.255 4.493 -20.902 21.498 Atomic orbital electron populations 1.21767 0.95214 1.01115 1.00391 1.20910 0.95565 0.95924 0.94894 1.21770 1.00437 0.95857 1.00533 1.19093 0.96328 0.95195 0.89484 1.21232 1.31038 1.12027 0.90491 0.92158 1.25008 0.95319 0.95086 0.99080 1.69972 1.37095 1.23107 1.23304 0.86595 0.78617 0.79707 0.83433 1.19764 1.21132 1.21149 1.21698 0.98952 0.96046 0.82859 1.46224 1.52502 1.31767 1.05564 1.19623 0.80654 0.84536 0.84066 1.90686 1.38045 1.26308 1.86413 1.21657 0.99588 0.94962 0.96627 1.21679 0.89676 1.03489 1.03784 1.22757 0.96317 1.01695 0.94688 1.22202 0.98973 0.82712 0.98640 1.46141 1.36183 1.12622 1.43477 1.20342 0.79812 0.89343 0.78897 1.90781 1.62117 1.41489 1.44772 0.95199 0.91336 0.93321 0.91388 0.93500 0.94917 0.96319 0.96372 0.93122 0.91759 0.91522 0.75865 0.90896 0.91142 0.90687 0.87142 0.89254 0.89895 0.90369 0.74840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 2 C -0.07 -1.43 0.54 -154.51 -0.08 -1.51 16 3 C -0.13 -2.45 8.05 37.15 0.30 -2.15 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.73 7.65 -34.44 -0.26 -13.99 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.28 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 14 N -0.71 -11.12 4.82 -60.29 -0.29 -11.41 16 15 C 0.53 7.87 6.55 -10.99 -0.07 7.80 16 16 O -0.54 -9.37 15.46 5.55 0.09 -9.28 16 17 C -0.12 -1.36 0.74 -155.67 -0.12 -1.48 16 18 C -0.13 -1.21 8.31 37.16 0.31 -0.90 16 19 C -0.12 -0.96 6.06 -24.91 -0.15 -1.11 16 20 C 0.10 0.72 7.79 -2.93 -0.02 0.70 16 21 N -0.73 -6.70 6.24 -59.01 -0.37 -7.06 16 22 C 0.53 6.59 7.13 -10.86 -0.08 6.51 16 23 O -0.52 -8.05 17.83 5.56 0.10 -7.96 16 24 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 25 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.55 6.86 -51.93 -0.36 0.20 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.40 6.08 5.57 -40.82 -0.23 5.85 16 36 H 0.07 0.75 7.59 -51.93 -0.39 0.36 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.11 1.02 6.94 -51.93 -0.36 0.66 16 40 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.41 3.05 8.96 -40.82 -0.37 2.68 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -32.61 342.76 -6.52 -39.13 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.82 Total: 4.46 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.11 Total: -3.59 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.08 Total: -44.34 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.19 Total: -17.24 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.61 -6.52 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602157124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.693 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds