Wall clock time and date at job start Tue Mar 31 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00522 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47438 * 119.99718 * 9 7 5 12 12 H 1.48505 * 109.46997 * 239.99833 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 14 14 N 1.46506 * 109.47075 * 59.99940 * 13 2 1 15 15 C 1.34777 * 120.00264 * 179.97438 * 14 13 2 16 16 O 1.21284 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99757 * 180.02562 * 15 14 13 18 18 C 1.53001 * 110.43850 * 300.69994 * 17 15 14 19 19 C 1.54633 * 110.48429 * 178.16435 * 17 15 14 20 20 C 1.54834 * 101.60249 * 266.07941 * 19 17 15 21 21 N 1.46766 * 105.49281 * 334.56948 * 20 19 17 22 22 C 1.34419 * 111.30267 * 17.03573 * 21 20 19 23 23 O 1.21277 * 124.93886 * 179.63068 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 0.96992 * 120.00310 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 35 35 H 0.96999 * 119.99689 * 0.02562 * 14 13 2 36 36 H 1.09006 * 109.46479 * 59.30146 * 18 17 15 37 37 H 1.08994 * 109.47207 * 179.29740 * 18 17 15 38 38 H 1.08996 * 109.47247 * 299.30379 * 18 17 15 39 39 H 1.08995 * 110.97157 * 24.23566 * 19 17 15 40 40 H 1.08998 * 110.97110 * 148.00265 * 19 17 15 41 41 H 1.08993 * 110.22071 * 215.56799 * 20 19 17 42 42 H 1.09006 * 110.32645 * 93.61802 * 20 19 17 43 43 H 0.97007 * 124.34302 * 197.01504 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5377 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4817 3.7319 8 7 2.6272 -1.5510 3.8527 9 14 1.2479 0.3984 5.2572 10 1 0.4226 1.5649 4.8530 11 1 0.4236 -0.5355 6.0656 12 1 2.4027 0.8659 6.0655 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6696 16 8 2.5750 -1.4769 -3.7808 17 6 1.3758 0.2200 -4.8999 18 6 -0.1539 0.2481 -4.9141 19 6 1.9162 -0.4630 -6.1777 20 6 3.1866 0.3743 -6.4647 21 7 2.9400 1.6842 -5.8504 22 6 1.9318 1.6254 -4.9633 23 8 1.5264 2.5630 -4.3095 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 2.8615 -1.8824 4.7336 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2493 35 1 0.9943 0.7582 -2.3564 36 1 -0.5160 0.7612 -4.0231 37 1 -0.4994 0.7759 -5.8029 38 1 -0.5360 -0.7726 -4.9260 39 1 2.1690 -1.5056 -5.9856 40 1 1.2010 -0.3810 -6.9961 41 1 3.3313 0.4830 -7.5395 42 1 4.0601 -0.0958 -6.0127 43 1 3.4405 2.4888 -6.0577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602157124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:57 Heat of formation + Delta-G solvation = -117.612851 kcal Electronic energy + Delta-G solvation = -23227.466406 eV Core-core repulsion = 19884.699121 eV Total energy + Delta-G solvation = -3342.767286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.29112 -40.20957 -38.71812 -37.35492 -35.33465 -34.40592 -33.64403 -29.79997 -29.08902 -28.02161 -27.79875 -26.44617 -25.05386 -23.19805 -22.59616 -20.76600 -19.68485 -18.56944 -18.36974 -18.34731 -17.03702 -16.65907 -16.43733 -16.19906 -15.83488 -15.23128 -14.98834 -14.85116 -14.78814 -14.59344 -14.32774 -13.97538 -13.86501 -13.53596 -13.38841 -13.20324 -12.90843 -12.71790 -12.64349 -12.38078 -12.32663 -12.26029 -12.13146 -11.97131 -11.58118 -11.29082 -11.01732 -10.89104 -10.75326 -10.52518 -10.15613 -10.13344 -8.14795 -6.22331 1.15715 1.41013 1.42290 1.53627 1.54326 2.14188 2.36702 2.44627 3.16006 3.19715 3.35512 3.60459 3.86130 3.96425 4.02939 4.08303 4.18068 4.39553 4.64489 4.66489 4.67897 4.69794 4.74327 4.77070 4.91088 5.00283 5.04579 5.08272 5.11255 5.15014 5.33249 5.42139 5.45020 5.49091 5.54707 5.70082 5.76342 5.88592 5.90590 6.29265 6.43308 6.92228 7.05608 7.12311 7.45341 8.97897 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.003731 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.138327 B = 7503.499633 C = 7707.529001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.070 0.930 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.957 3.043 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.284 1.284 13 C 0.140 3.860 14 N -0.707 5.707 15 C 0.525 3.475 16 O -0.565 6.565 17 C -0.118 4.118 18 C -0.129 4.129 19 C -0.113 4.113 20 C 0.096 3.904 21 N -0.717 5.717 22 C 0.524 3.476 23 O -0.555 6.555 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.056 0.944 30 H -0.009 1.009 31 H -0.013 1.013 32 H 0.260 0.740 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 5.126 -24.253 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.178 4.178 4 C 0.005 3.995 5 C -0.553 4.553 6 H 0.088 0.912 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.016 3.984 14 N -0.358 5.358 15 C 0.310 3.690 16 O -0.444 6.444 17 C -0.125 4.125 18 C -0.186 4.186 19 C -0.150 4.150 20 C -0.027 4.027 21 N -0.372 5.372 22 C 0.308 3.692 23 O -0.433 6.433 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.010 0.990 31 H 0.005 0.995 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.248 0.752 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.086 0.914 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.290 4.716 -23.838 24.522 hybrid contribution 0.266 0.642 1.410 1.572 sum -3.025 5.357 -22.427 23.256 Atomic orbital electron populations 1.21689 0.93531 1.01265 1.01389 1.20717 0.96821 0.95867 0.93168 1.21676 0.99795 0.95195 1.01155 1.18951 0.94287 0.94329 0.91961 1.21609 1.30445 1.12048 0.91162 0.91201 1.25909 0.95619 0.95850 1.02585 1.70115 1.38737 1.24908 1.24063 0.85506 0.78080 0.78821 0.79302 1.18309 1.20809 1.21018 1.21298 0.97828 0.95668 0.83583 1.46103 1.52741 1.31788 1.05198 1.20310 0.79761 0.84190 0.84701 1.90674 1.39158 1.27693 1.86916 1.21704 1.00856 0.94247 0.95706 1.21743 0.88128 1.04334 1.04416 1.22860 0.97307 1.00837 0.94023 1.22404 0.98139 0.81390 1.00773 1.46187 1.34899 1.13781 1.42315 1.20559 0.80358 0.89239 0.79020 1.90755 1.63529 1.42637 1.46416 0.91926 0.92511 0.93641 0.92410 0.94485 0.92482 0.99021 0.99502 0.93115 0.93475 0.92440 0.75232 0.91983 0.88885 0.89707 0.88170 0.85866 0.85885 0.91401 0.73796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.05 71.98 0.58 -3.75 16 2 C -0.07 -2.61 0.54 -52.18 -0.03 -2.64 16 3 C -0.12 -4.57 8.05 71.98 0.58 -4.00 16 4 C 0.04 2.19 4.04 29.85 0.12 2.31 16 5 C -0.51 -28.13 7.65 25.60 0.20 -27.94 16 6 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.14 5.21 4.56 86.38 0.39 5.60 16 14 N -0.71 -21.76 4.82 -463.05 -2.23 -23.99 16 15 C 0.52 15.24 6.55 87.66 0.57 15.81 16 16 O -0.57 -19.64 15.46 -3.04 -0.05 -19.69 16 17 C -0.12 -2.41 0.74 -52.94 -0.04 -2.45 16 18 C -0.13 -2.08 8.31 71.98 0.60 -1.48 16 19 C -0.11 -1.51 6.06 31.78 0.19 -1.32 16 20 C 0.10 1.12 7.79 86.95 0.68 1.80 16 21 N -0.72 -11.43 6.24 -459.20 -2.87 -14.30 16 22 C 0.52 11.99 7.13 87.90 0.63 12.62 16 23 O -0.56 -16.57 17.83 -3.02 -0.05 -16.63 16 24 H 0.06 1.81 6.86 -2.39 -0.02 1.79 16 25 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 26 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.06 2.29 6.62 -2.39 -0.02 2.28 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.87 6.86 -2.39 -0.02 1.85 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.41 11.78 5.57 -92.71 -0.52 11.26 16 36 H 0.06 1.15 7.59 -2.38 -0.02 1.13 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 1.64 6.94 -2.39 -0.02 1.62 16 40 H 0.12 0.85 7.91 -2.39 -0.02 0.83 16 41 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.42 5.25 8.96 -92.70 -0.83 4.42 16 Total: -1.00 -72.43 342.76 1.72 -70.70 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.33 Total: 19.72 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.93 Total: -5.12 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -4.81 Total: -95.23 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.10 Total: -36.32 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.43 1.72 -70.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602157124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.909 kcal (2) G-P(sol) polarization free energy of solvation -72.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds