Wall clock time and date at job start Tue Mar 31 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46819 * 2 1 4 4 C 1.52999 * 109.47490 * 239.99706 * 2 1 3 5 5 C 1.50701 * 109.46816 * 60.00237 * 4 2 1 6 6 H 1.08004 * 119.99849 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99889 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00043 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47326 * 89.99719 * 9 7 5 11 11 H 1.48501 * 109.46850 * 209.99986 * 9 7 5 12 12 H 1.48504 * 109.47057 * 329.99519 * 9 7 5 13 13 C 1.53002 * 109.47185 * 119.99566 * 2 1 3 14 14 N 1.46500 * 109.47163 * 300.00619 * 13 2 1 15 15 C 1.34775 * 119.99897 * 179.97438 * 14 13 2 16 16 O 1.21282 * 120.00414 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99841 * 179.97438 * 15 14 13 18 18 C 1.52997 * 110.43398 * 59.30191 * 17 15 14 19 19 C 1.54632 * 110.59617 * 181.91802 * 17 15 14 20 20 C 1.54484 * 101.76407 * 93.93838 * 19 17 15 21 21 N 1.46756 * 105.47326 * 25.41095 * 20 19 17 22 22 C 1.34423 * 111.30478 * 342.98886 * 21 20 19 23 23 O 1.21278 * 124.94069 * 180.37394 * 22 21 20 24 24 H 1.08997 * 109.47551 * 300.00143 * 1 2 3 25 25 H 1.09000 * 109.46974 * 60.00050 * 1 2 3 26 26 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46971 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47306 * 299.99746 * 3 2 1 29 29 H 1.09000 * 109.47366 * 60.00369 * 3 2 1 30 30 H 1.08997 * 109.46875 * 179.97438 * 4 2 1 31 31 H 1.08990 * 109.47430 * 300.00149 * 4 2 1 32 32 H 0.96999 * 120.00299 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47204 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.47031 * 60.00195 * 13 2 1 35 35 H 0.96997 * 120.00136 * 359.97438 * 14 13 2 36 36 H 1.09002 * 109.47153 * 298.90969 * 18 17 15 37 37 H 1.09001 * 109.46832 * 178.91160 * 18 17 15 38 38 H 1.09004 * 109.47261 * 58.91141 * 18 17 15 39 39 H 1.08994 * 110.96659 * 212.05408 * 19 17 15 40 40 H 1.08996 * 110.96982 * 335.82066 * 19 17 15 41 41 H 1.09003 * 110.24183 * 266.41163 * 20 19 17 42 42 H 1.09000 * 110.24809 * 144.41470 * 20 19 17 43 43 H 0.97000 * 124.34803 * 162.96235 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8714 -0.4816 -3.7319 8 7 1.4326 0.1380 -4.8057 9 14 2.9453 -2.0004 -3.9032 10 1 2.0868 -3.2111 -3.9492 11 1 3.7377 -1.9075 -5.1557 12 1 3.8653 -2.0898 -2.7409 13 6 2.0400 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4454 15 6 1.8767 -0.4913 3.6695 16 8 2.5741 -1.4773 3.7809 17 6 1.3747 0.2195 4.9000 18 6 -0.1549 0.2486 4.9134 19 6 1.9143 -0.4609 6.1794 20 6 3.1817 0.3735 6.4693 21 7 2.9376 1.6831 5.8536 22 6 1.9316 1.6246 4.9640 23 8 1.5286 2.5621 4.3085 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2493 31 1 1.6768 -1.7489 -1.2492 32 1 1.6676 -0.1929 -5.6867 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2494 35 1 0.9941 0.7582 2.3564 36 1 -0.5157 0.7898 4.0387 37 1 -0.5009 0.7484 5.8182 38 1 -0.5379 -0.7718 4.8929 39 1 1.1979 -0.3787 6.9967 40 1 2.1688 -1.5035 5.9891 41 1 4.0550 -0.0982 6.0188 42 1 3.3237 0.4827 7.5445 43 1 3.4377 2.4877 6.0621 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602157130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:59 Heat of formation + Delta-G solvation = -90.243797 kcal Electronic energy + Delta-G solvation = -23276.157660 eV Core-core repulsion = 19934.577186 eV Total energy + Delta-G solvation = -3341.580474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.38340 -39.06420 -37.33751 -36.43828 -33.91608 -33.19343 -32.01377 -29.10370 -27.81175 -26.51114 -26.49387 -25.58193 -23.10909 -22.10282 -21.47596 -19.62841 -18.26483 -17.61294 -17.39192 -16.81035 -15.82746 -15.62781 -15.19978 -14.80274 -14.24578 -14.21049 -13.95238 -13.69399 -13.63578 -13.41052 -12.93684 -12.69759 -12.65805 -12.47820 -12.29715 -12.22094 -11.68673 -11.45186 -11.21731 -11.08775 -10.97639 -10.59307 -10.47059 -10.21882 -9.94624 -9.87308 -9.72841 -9.46851 -9.38628 -8.97317 -8.85496 -8.51772 -6.02223 -3.99383 2.12941 2.58245 3.02843 3.31870 3.32568 3.40402 3.44303 3.91522 4.08530 4.40826 4.47092 4.69736 4.74817 4.98731 5.17820 5.30225 5.33908 5.38668 5.42068 5.53702 5.55670 5.67460 5.72062 5.80732 6.12475 6.15200 6.18940 6.36725 6.41523 6.47463 6.63903 6.64719 6.69585 6.93136 7.05133 7.08654 7.21829 7.38313 7.58862 7.80812 7.91105 8.21858 8.55393 9.02302 9.60316 11.10586 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.003970 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.928525 B = 7050.921778 C = 7315.178534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.001 4.001 5 C -0.510 4.510 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.125 3.875 14 N -0.709 5.709 15 C 0.529 3.471 16 O -0.538 6.538 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.117 4.117 20 C 0.099 3.901 21 N -0.728 5.728 22 C 0.531 3.469 23 O -0.516 6.516 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 0.138 24.606 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.039 4.039 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.360 5.360 15 C 0.312 3.688 16 O -0.415 6.415 17 C -0.128 4.128 18 C -0.187 4.187 19 C -0.155 4.155 20 C -0.025 4.025 21 N -0.384 5.384 22 C 0.315 3.685 23 O -0.390 6.390 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.492 -0.177 24.077 24.082 hybrid contribution 0.643 -0.124 -0.174 0.678 sum 1.135 -0.301 23.903 23.931 Atomic orbital electron populations 1.21782 0.94729 1.01213 1.00940 1.20697 0.95919 0.95985 0.93748 1.21783 1.00344 0.95543 1.01076 1.19587 0.96249 0.95452 0.92611 1.21089 1.31775 1.13367 0.88601 0.90355 1.24996 0.95711 0.96743 0.95972 1.69903 1.45936 1.40600 0.97865 0.86857 0.81333 0.83944 0.77622 1.20373 1.21515 1.19036 1.21708 0.98920 0.96052 0.83121 1.46183 1.52582 1.31811 1.05459 1.19629 0.80571 0.84491 0.84059 1.90681 1.38064 1.26347 1.86440 1.21650 0.99633 0.94993 0.96516 1.21687 0.89607 1.03536 1.03851 1.22697 0.96407 1.01705 0.94685 1.22141 0.98968 0.82737 0.98659 1.46141 1.36357 1.12638 1.43292 1.20341 0.79816 0.89336 0.78964 1.90788 1.62066 1.41453 1.44716 0.94953 0.90776 0.93368 0.93541 0.90819 0.94677 0.96401 0.96798 0.92813 0.91772 0.91537 0.75703 0.90820 0.91081 0.90696 0.89217 0.87195 0.90412 0.89854 0.74816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 2 C -0.06 -1.20 0.54 -154.51 -0.08 -1.28 16 3 C -0.13 -2.44 8.05 37.16 0.30 -2.15 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -13.86 8.20 -34.44 -0.28 -14.14 16 6 H 0.08 2.26 5.92 -52.48 -0.31 1.95 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 9 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.12 2.15 4.56 -4.04 -0.02 2.13 16 14 N -0.71 -10.66 4.82 -60.29 -0.29 -10.96 16 15 C 0.53 7.58 6.55 -10.98 -0.07 7.51 16 16 O -0.54 -9.00 15.47 5.56 0.09 -8.92 16 17 C -0.12 -1.31 0.75 -155.67 -0.12 -1.43 16 18 C -0.13 -1.17 8.30 37.16 0.31 -0.86 16 19 C -0.12 -0.92 6.04 -25.09 -0.15 -1.07 16 20 C 0.10 0.69 7.78 -3.12 -0.02 0.67 16 21 N -0.73 -6.47 6.24 -59.20 -0.37 -6.84 16 22 C 0.53 6.41 7.13 -10.86 -0.08 6.33 16 23 O -0.52 -7.90 17.83 5.56 0.10 -7.80 16 24 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 25 H 0.07 1.49 6.62 -51.93 -0.34 1.14 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.52 6.62 -51.93 -0.34 1.18 16 29 H 0.03 0.59 6.86 -51.93 -0.36 0.23 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 5.90 5.59 -40.82 -0.23 5.67 16 36 H 0.07 0.74 7.64 -51.93 -0.40 0.34 16 37 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.49 7.90 -51.93 -0.41 0.08 16 40 H 0.11 0.97 6.95 -51.93 -0.36 0.61 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.41 2.94 8.96 -40.82 -0.37 2.57 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -32.93 339.20 -6.15 -39.08 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.79 Total: 4.65 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.10 Total: -4.61 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.11 Total: -44.49 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.19 Total: -16.72 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.93 -6.15 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602157130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.160 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds