Wall clock time and date at job start Tue Mar 31 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47326 * 2 1 4 4 C 1.50701 * 109.47002 * 239.99815 * 2 1 3 5 5 O 1.21281 * 120.00238 * 259.72754 * 4 2 1 6 6 N 1.34778 * 119.99865 * 79.72414 * 4 2 1 7 7 C 1.47078 * 120.88418 * 354.36408 * 6 4 2 8 8 C 1.53237 * 108.52241 * 231.20312 * 7 6 4 9 9 N 1.46892 * 109.33973 * 306.16925 * 8 7 6 10 10 C 1.46907 * 111.00000 * 187.25413 * 9 8 7 11 11 C 1.50693 * 109.47031 * 170.00004 * 10 9 8 12 12 H 1.08001 * 120.00623 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99911 * 179.72051 * 11 10 9 14 14 N 1.31515 * 120.00146 * 0.27842 * 13 11 10 15 15 Si 1.86799 * 120.00345 * 180.27538 * 13 11 10 16 16 H 1.48504 * 109.47082 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47287 * 119.99955 * 15 13 11 18 18 H 1.48499 * 109.47496 * 240.00560 * 15 13 11 19 19 C 1.46903 * 111.27070 * 63.10748 * 9 8 7 20 20 C 1.47086 * 120.87927 * 174.38183 * 6 4 2 21 21 C 1.53000 * 109.46842 * 120.00212 * 2 1 3 22 22 C 1.52998 * 117.50211 * 13.61602 * 21 2 1 23 23 C 1.52996 * 60.00016 * 252.51193 * 22 21 2 24 24 H 1.08996 * 109.47522 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46908 * 300.00603 * 1 2 3 26 26 H 1.08999 * 109.46943 * 59.99489 * 1 2 3 27 27 H 0.96699 * 114.00214 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.62904 * 111.49210 * 7 6 4 29 29 H 1.08997 * 109.62630 * 350.91864 * 7 6 4 30 30 H 1.09000 * 109.49242 * 186.20636 * 8 7 6 31 31 H 1.08998 * 109.48786 * 66.13148 * 8 7 6 32 32 H 1.08997 * 109.46848 * 49.99949 * 10 9 8 33 33 H 1.09000 * 109.46587 * 289.99977 * 10 9 8 34 34 H 0.96999 * 120.00406 * 179.97438 * 14 13 11 35 35 H 1.08993 * 109.49266 * 56.84724 * 19 9 8 36 36 H 1.09000 * 109.49334 * 176.93907 * 19 9 8 37 37 H 1.09003 * 109.62932 * 248.50710 * 20 6 4 38 38 H 1.08996 * 109.62492 * 9.08637 * 20 6 4 39 39 H 1.09001 * 115.54828 * 159.33309 * 21 2 1 40 40 H 1.08998 * 117.49701 * 0.02562 * 22 21 2 41 41 H 1.09002 * 117.49726 * 145.01736 * 22 21 2 42 42 H 1.09001 * 117.50210 * 252.50780 * 23 22 21 43 43 H 1.09008 * 117.51679 * 107.48403 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.4111 -1.8601 -1.1548 6 7 2.0606 -0.0682 -2.4150 7 6 1.4933 1.2814 -2.5559 8 6 0.5338 1.2839 -3.7507 9 7 1.2345 0.7777 -4.9383 10 6 0.4046 0.9243 -6.1416 11 6 1.2351 0.6283 -7.3637 12 1 2.2755 0.3587 -7.2574 13 6 0.6654 0.6967 -8.6174 14 7 -0.6013 1.0255 -8.7471 15 14 1.6928 0.3223 -10.1319 16 1 3.0776 -0.0196 -9.7185 17 1 1.0974 -0.8251 -10.8628 18 1 1.7203 1.5134 -11.0183 19 6 1.6539 -0.6182 -4.7550 20 6 2.6594 -0.6986 -3.6014 21 6 2.0400 -0.7213 1.2492 22 6 1.0319 -1.5509 2.0470 23 6 1.5416 -0.2213 2.6066 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 2.9704 1.4236 -0.0004 28 1 2.2950 1.9995 -2.7285 29 1 0.9496 1.5464 -1.6491 30 1 0.1886 2.3007 -3.9378 31 1 -0.3208 0.6436 -3.5321 32 1 0.0247 1.9443 -6.1988 33 1 -0.4319 0.2271 -6.0931 34 1 -1.0020 1.0739 -9.6291 35 1 0.7837 -1.2319 -4.5225 36 1 2.1212 -0.9808 -5.6706 37 1 3.5732 -0.1709 -3.8746 38 1 2.8867 -1.7426 -3.3858 39 1 3.0642 -1.0902 1.1939 40 1 0.0055 -1.5831 1.6817 41 1 1.3927 -2.4660 2.5166 42 1 2.2378 -0.2615 3.4444 43 1 0.8506 0.6219 2.6097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:35 Heat of formation + Delta-G solvation = -40.285543 kcal Electronic energy + Delta-G solvation = -23364.517604 eV Core-core repulsion = 20025.103482 eV Total energy + Delta-G solvation = -3339.414122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76245 -38.42996 -37.23602 -35.92497 -34.24624 -32.38381 -31.24991 -30.27249 -28.26684 -25.92376 -25.00014 -23.37551 -22.60602 -22.20819 -21.21264 -19.92128 -19.03899 -17.74024 -16.84379 -16.34121 -16.01987 -15.66302 -14.76853 -14.65611 -14.44364 -14.22940 -14.06436 -13.82811 -13.50526 -13.43606 -12.88425 -12.61291 -12.37044 -12.18196 -12.02886 -11.70804 -11.46981 -11.26506 -11.10662 -10.85926 -10.83059 -10.74263 -10.61661 -10.57700 -10.51121 -10.36760 -9.87344 -9.38084 -9.18547 -8.50461 -8.42191 -7.32345 -6.06793 -4.08538 2.55818 3.00601 3.28860 3.36496 3.40990 3.50313 3.99666 4.29547 4.37350 4.39664 4.64796 4.78101 4.83589 4.92573 5.20970 5.28832 5.33791 5.36125 5.43956 5.49963 5.55355 5.63200 5.64213 5.68145 5.81282 5.84087 5.90198 5.96571 5.98246 6.13574 6.25071 6.43867 6.52474 6.72158 7.20152 7.22414 7.28054 7.56274 7.74778 8.01134 8.11643 8.20620 8.47731 8.99055 9.56136 11.04096 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040681 B = 0.003634 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.124330 B = 7704.123595 C = 7951.463003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 O -0.541 6.541 4 C 0.489 3.511 5 O -0.542 6.542 6 N -0.597 5.597 7 C 0.106 3.894 8 C 0.037 3.963 9 N -0.535 5.535 10 C 0.193 3.807 11 C -0.509 4.509 12 H 0.064 0.936 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.052 3.948 20 C 0.111 3.889 21 C -0.168 4.168 22 C -0.170 4.170 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.381 0.619 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.024 0.976 32 H 0.032 0.968 33 H -0.009 1.009 34 H 0.261 0.739 35 H 0.023 0.977 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 -0.529 20.404 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.109 3.891 3 O -0.347 6.347 4 C 0.276 3.724 5 O -0.420 6.420 6 N -0.329 5.329 7 C -0.016 4.016 8 C -0.093 4.093 9 N -0.260 5.260 10 C 0.068 3.932 11 C -0.547 4.547 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.077 4.077 20 C -0.011 4.011 21 C -0.187 4.187 22 C -0.207 4.207 23 C -0.203 4.203 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.230 0.770 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.299 -0.691 20.220 20.499 hybrid contribution 0.291 -0.752 -0.989 1.276 sum 3.590 -1.443 19.231 19.616 Atomic orbital electron populations 1.22016 0.90913 1.03420 1.04051 1.20732 0.96023 0.81934 0.90404 1.86576 1.27345 1.24264 1.96538 1.21249 0.78961 0.87071 0.85158 1.90677 1.48541 1.17130 1.85610 1.48265 1.57715 1.17932 1.09023 1.22251 0.97643 0.82471 0.99250 1.22465 0.94616 1.00757 0.91419 1.62095 1.42891 1.18049 1.02983 1.19732 0.91140 0.96743 0.85566 1.21180 0.97097 1.46265 0.90167 0.91754 1.24995 0.95004 0.95412 0.99197 1.69965 1.11638 1.48658 1.23488 0.86441 0.80404 0.77869 0.82708 1.19617 1.21118 1.20987 1.22315 0.97028 0.90409 0.97928 1.21896 0.96560 0.98720 0.83927 1.22588 1.00352 1.04342 0.91434 1.23075 0.99363 0.95165 1.03118 1.22935 1.03755 0.98042 0.95581 0.90212 0.90479 0.90743 0.77042 0.90901 0.87695 0.90090 0.95790 0.95030 0.99155 0.92934 0.95845 0.88559 0.90906 0.89565 0.87214 0.88039 0.88660 0.88731 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.22 37.16 0.27 -1.25 16 2 C 0.15 1.70 0.78 -91.77 -0.07 1.62 16 3 O -0.54 -5.28 10.06 -35.23 -0.35 -5.63 16 4 C 0.49 7.16 6.62 -10.98 -0.07 7.09 16 5 O -0.54 -9.59 15.55 5.56 0.09 -9.51 16 6 N -0.60 -8.96 3.01 -172.46 -0.52 -9.48 16 7 C 0.11 1.48 5.27 -3.60 -0.02 1.46 16 8 C 0.04 0.63 5.62 -3.71 -0.02 0.61 16 9 N -0.53 -11.18 4.62 -235.77 -1.09 -12.27 16 10 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 11 C -0.51 -14.00 8.41 -34.44 -0.29 -14.29 16 12 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 20 C 0.11 1.83 6.61 -3.60 -0.02 1.81 16 21 C -0.17 -1.72 4.73 -90.62 -0.43 -2.15 16 22 C -0.17 -1.55 9.65 -26.73 -0.26 -1.80 16 23 C -0.17 -1.35 9.85 -26.73 -0.26 -1.61 16 24 H 0.08 0.82 6.74 -51.93 -0.35 0.47 16 25 H 0.08 0.67 6.96 -51.93 -0.36 0.30 16 26 H 0.07 0.82 6.39 -51.93 -0.33 0.48 16 27 H 0.38 2.82 9.04 45.56 0.41 3.23 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.11 1.28 3.73 -51.93 -0.19 1.09 16 30 H 0.08 1.35 7.99 -51.93 -0.41 0.93 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 33 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 1.99 6.67 -51.93 -0.35 1.65 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.43 7.04 -51.93 -0.37 1.06 16 39 H 0.11 1.22 8.00 -51.93 -0.42 0.80 16 40 H 0.10 0.88 5.89 -51.93 -0.31 0.57 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.77 7.29 -51.92 -0.38 0.39 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -31.48 333.90 -8.38 -39.86 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.93 Total: 2.44 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.32 Total: -1.14 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.87 Total: -47.43 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.27 Total: -15.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.48 -8.38 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.423 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds