Wall clock time and date at job start Tue Mar 31 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47133 * 2 1 4 4 C 1.50699 * 109.47076 * 119.99998 * 2 1 3 5 5 O 1.21282 * 120.00100 * 100.30992 * 4 2 1 6 6 N 1.34774 * 119.99924 * 280.30867 * 4 2 1 7 7 C 1.47081 * 120.88367 * 5.42566 * 6 4 2 8 8 C 1.53691 * 108.27644 * 128.75396 * 7 6 4 9 9 N 1.46901 * 109.25635 * 54.08664 * 8 7 6 10 10 C 1.46898 * 110.99828 * 172.60731 * 9 8 7 11 11 C 1.50703 * 109.47120 * 294.30044 * 10 9 8 12 12 H 1.08001 * 119.99824 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99844 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99969 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99792 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47051 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47146 * 119.99818 * 15 13 11 18 18 H 1.48499 * 109.47045 * 240.00224 * 15 13 11 19 19 C 1.46903 * 111.26753 * 296.75296 * 9 8 7 20 20 C 1.47088 * 120.87966 * 185.70436 * 6 4 2 21 21 C 1.53005 * 109.47194 * 239.99861 * 2 1 3 22 22 C 1.53000 * 117.49867 * 60.00479 * 21 2 1 23 23 C 1.53004 * 60.03097 * 252.49592 * 22 21 2 24 24 H 1.09004 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47307 * 300.00055 * 1 2 3 26 26 H 1.09007 * 109.46793 * 60.00075 * 1 2 3 27 27 H 0.96703 * 114.00240 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.62681 * 248.52491 * 7 6 4 29 29 H 1.09002 * 109.62529 * 9.10268 * 7 6 4 30 30 H 1.09001 * 109.64808 * 294.07924 * 8 7 6 31 31 H 1.09003 * 109.42022 * 173.94700 * 8 7 6 32 32 H 1.09005 * 109.47208 * 54.29621 * 10 9 8 33 33 H 1.09002 * 109.47119 * 174.29812 * 10 9 8 34 34 H 0.96997 * 119.99627 * 179.97438 * 14 13 11 35 35 H 1.09006 * 109.49307 * 303.14810 * 19 9 8 36 36 H 1.08999 * 109.48967 * 183.06801 * 19 9 8 37 37 H 1.08992 * 109.62604 * 350.89729 * 20 6 4 38 38 H 1.09005 * 109.62690 * 111.47713 * 20 6 4 39 39 H 1.09000 * 115.55080 * 205.67206 * 21 2 1 40 40 H 1.09009 * 117.49680 * 359.97438 * 22 21 2 41 41 H 1.08995 * 117.50141 * 145.00112 * 22 21 2 42 42 H 1.08999 * 117.49757 * 107.49633 * 23 22 21 43 43 H 1.08996 * 117.50154 * 252.51918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4117 -1.8599 1.1547 6 7 2.0600 -0.0684 2.4151 7 6 1.4960 1.2828 2.5549 8 6 0.5318 1.2812 3.7517 9 7 1.2341 0.7760 4.9390 10 6 0.4046 0.9212 6.1427 11 6 0.1965 2.3848 6.4358 12 1 0.6368 3.1322 5.7925 13 6 -0.5551 2.7695 7.5259 14 7 -1.0899 1.8592 8.3101 15 14 -0.8124 4.5836 7.8896 16 1 -0.1113 5.3982 6.8648 17 1 -2.2644 4.8934 7.8590 18 1 -0.2666 4.9012 9.2336 19 6 1.6556 -0.6192 4.7553 20 6 2.6604 -0.6979 3.6011 21 6 2.0400 -0.7213 -1.2493 22 6 1.6358 -0.1495 -2.6096 23 6 1.0102 -1.4543 -2.1126 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 2.9703 1.4236 0.0004 28 1 2.2993 1.9986 2.7290 29 1 0.9546 1.5493 1.6472 30 1 -0.3220 0.6396 3.5336 31 1 0.1851 2.2975 3.9392 32 1 -0.5609 0.4427 5.9785 33 1 0.9052 0.4490 6.9880 34 1 -1.6183 2.1299 9.0771 35 1 0.7861 -1.2343 4.5233 36 1 2.1239 -0.9811 5.6706 37 1 2.8892 -1.7415 3.3853 38 1 3.5736 -0.1688 3.8738 39 1 3.0324 -1.1641 -1.1642 40 1 1.0062 0.7403 -2.6146 41 1 2.3622 -0.2163 -3.4195 42 1 -0.0306 -1.4227 -1.7905 43 1 1.3253 -2.3795 -2.5952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:36 Heat of formation + Delta-G solvation = -40.624489 kcal Electronic energy + Delta-G solvation = -23414.424662 eV Core-core repulsion = 20074.995842 eV Total energy + Delta-G solvation = -3339.428820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74888 -38.41819 -37.23531 -35.87806 -34.23875 -32.41076 -31.23291 -30.24936 -28.24573 -25.96852 -24.95882 -23.31417 -22.57318 -22.30258 -21.13925 -19.93154 -19.04929 -17.70757 -16.80446 -16.38718 -16.01828 -15.63954 -14.78935 -14.63152 -14.39599 -14.19030 -14.09727 -13.86252 -13.50179 -13.40896 -12.80721 -12.60819 -12.36792 -12.19707 -11.90639 -11.77303 -11.46787 -11.27550 -11.04850 -11.01337 -10.77462 -10.74486 -10.59493 -10.55572 -10.49462 -10.35401 -9.88618 -9.29164 -9.25613 -8.51193 -8.42276 -7.32330 -6.06986 -4.08907 2.55540 3.01168 3.28377 3.36096 3.40330 3.51100 4.01710 4.30758 4.38522 4.40034 4.66971 4.79913 4.84418 4.96216 5.23149 5.28514 5.36105 5.39630 5.44010 5.51298 5.55683 5.62130 5.66410 5.69530 5.81850 5.86134 5.91479 5.95352 5.99324 6.11285 6.28257 6.49085 6.50442 6.68495 7.21641 7.23457 7.28053 7.56387 7.74358 8.01408 8.11939 8.19954 8.47248 8.98752 9.55760 11.03913 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.003947 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.927031 B = 7092.210867 C = 7585.899074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 O -0.540 6.540 4 C 0.490 3.510 5 O -0.544 6.544 6 N -0.596 5.596 7 C 0.103 3.897 8 C 0.048 3.952 9 N -0.535 5.535 10 C 0.193 3.807 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.042 3.958 20 C 0.114 3.886 21 C -0.170 4.170 22 C -0.165 4.165 23 C -0.172 4.172 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.381 0.619 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.022 0.978 31 H 0.096 0.904 32 H -0.009 1.009 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 -3.343 -18.884 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.109 3.891 3 O -0.346 6.346 4 C 0.277 3.723 5 O -0.422 6.422 6 N -0.329 5.329 7 C -0.019 4.019 8 C -0.081 4.081 9 N -0.260 5.260 10 C 0.068 3.932 11 C -0.547 4.547 12 H 0.083 0.917 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.088 4.088 20 C -0.008 4.008 21 C -0.189 4.189 22 C -0.202 4.202 23 C -0.209 4.209 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.229 0.771 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.041 0.959 31 H 0.115 0.885 32 H 0.008 0.992 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.067 -3.551 -18.672 19.671 hybrid contribution -0.315 0.276 0.452 0.616 sum 4.751 -3.275 -18.221 19.113 Atomic orbital electron populations 1.22010 0.90853 1.03368 1.04130 1.20719 0.96068 0.81949 0.90333 1.86594 1.27301 1.24209 1.96519 1.21256 0.78856 0.87038 0.85195 1.90669 1.48710 1.17211 1.85655 1.48273 1.57727 1.18059 1.08849 1.22451 0.97804 0.81997 0.99695 1.22481 0.93772 1.02134 0.89762 1.62095 1.43715 1.16088 1.04128 1.19736 0.90012 0.97582 0.85881 1.21180 1.30973 0.91661 1.10882 0.91721 1.25001 0.95727 0.97813 0.96075 1.69969 1.34607 1.32923 1.16228 0.86441 0.77737 0.84973 0.78273 1.19588 1.21118 1.21005 1.22383 0.97275 0.91502 0.97601 1.21792 0.96254 0.98747 0.84013 1.22638 1.00960 1.04365 0.90889 1.22922 1.03695 0.97692 0.95915 1.23102 0.98637 0.96159 1.02972 0.90273 0.90640 0.90487 0.77083 0.90883 0.87637 0.95949 0.88541 0.99155 0.95075 0.92933 0.95632 0.90139 0.89580 0.90906 0.87121 0.88235 0.88753 0.87989 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.16 37.16 0.27 -1.31 16 2 C 0.15 1.74 0.77 -91.77 -0.07 1.67 16 3 O -0.54 -5.50 9.98 -35.23 -0.35 -5.85 16 4 C 0.49 7.18 6.61 -10.99 -0.07 7.10 16 5 O -0.54 -9.53 15.46 5.56 0.09 -9.44 16 6 N -0.60 -8.95 3.00 -172.18 -0.52 -9.47 16 7 C 0.10 1.51 5.30 -3.37 -0.02 1.49 16 8 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 9 N -0.54 -11.18 4.62 -235.46 -1.09 -12.27 16 10 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 11 C -0.51 -13.88 8.41 -34.44 -0.29 -14.17 16 12 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 15 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 20 C 0.11 1.80 6.61 -3.60 -0.02 1.77 16 21 C -0.17 -1.76 4.84 -90.58 -0.44 -2.20 16 22 C -0.17 -1.37 9.80 -26.73 -0.26 -1.63 16 23 C -0.17 -1.56 9.57 -26.69 -0.26 -1.82 16 24 H 0.08 0.84 6.98 -51.93 -0.36 0.48 16 25 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 26 H 0.08 0.70 7.07 -51.92 -0.37 0.33 16 27 H 0.38 2.95 9.04 45.56 0.41 3.36 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.11 1.38 3.73 -51.93 -0.19 1.19 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.90 6.67 -51.93 -0.35 1.56 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 33 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 37 H 0.09 1.34 7.04 -51.93 -0.37 0.98 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.11 1.25 7.84 -51.93 -0.41 0.85 16 40 H 0.10 0.81 7.61 -51.92 -0.39 0.42 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.88 5.85 -51.93 -0.30 0.58 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -31.26 334.16 -8.40 -39.66 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.96 Total: 2.92 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.33 Total: -1.14 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.87 Total: -47.35 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.27 Total: -15.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.26 -8.40 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.965 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds