Wall clock time and date at job start Tue Mar 31 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47133 * 2 1 4 4 C 1.50699 * 109.47076 * 119.99998 * 2 1 3 5 5 O 1.21282 * 120.00100 * 100.30992 * 4 2 1 6 6 N 1.34774 * 119.99924 * 280.30867 * 4 2 1 7 7 C 1.47081 * 120.88367 * 5.42566 * 6 4 2 8 8 C 1.53691 * 108.27644 * 128.75396 * 7 6 4 9 9 N 1.46901 * 109.25635 * 54.08664 * 8 7 6 10 10 C 1.46898 * 110.99828 * 172.60731 * 9 8 7 11 11 C 1.50703 * 109.47120 * 294.30044 * 10 9 8 12 12 H 1.08001 * 119.99824 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99844 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99969 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99792 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47051 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47146 * 119.99818 * 15 13 11 18 18 H 1.48499 * 109.47045 * 240.00224 * 15 13 11 19 19 C 1.46903 * 111.26753 * 296.75296 * 9 8 7 20 20 C 1.47088 * 120.87966 * 185.70436 * 6 4 2 21 21 C 1.53005 * 109.47194 * 239.99861 * 2 1 3 22 22 C 1.53000 * 117.49867 * 60.00479 * 21 2 1 23 23 C 1.53004 * 60.03097 * 252.49592 * 22 21 2 24 24 H 1.09004 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47307 * 300.00055 * 1 2 3 26 26 H 1.09007 * 109.46793 * 60.00075 * 1 2 3 27 27 H 0.96703 * 114.00240 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.62681 * 248.52491 * 7 6 4 29 29 H 1.09002 * 109.62529 * 9.10268 * 7 6 4 30 30 H 1.09001 * 109.64808 * 294.07924 * 8 7 6 31 31 H 1.09003 * 109.42022 * 173.94700 * 8 7 6 32 32 H 1.09005 * 109.47208 * 54.29621 * 10 9 8 33 33 H 1.09002 * 109.47119 * 174.29812 * 10 9 8 34 34 H 0.96997 * 119.99627 * 179.97438 * 14 13 11 35 35 H 1.09006 * 109.49307 * 303.14810 * 19 9 8 36 36 H 1.08999 * 109.48967 * 183.06801 * 19 9 8 37 37 H 1.08992 * 109.62604 * 350.89729 * 20 6 4 38 38 H 1.09005 * 109.62690 * 111.47713 * 20 6 4 39 39 H 1.09000 * 115.55080 * 205.67206 * 21 2 1 40 40 H 1.09009 * 117.49680 * 359.97438 * 22 21 2 41 41 H 1.08995 * 117.50141 * 145.00112 * 22 21 2 42 42 H 1.08999 * 117.49757 * 107.49633 * 23 22 21 43 43 H 1.08996 * 117.50154 * 252.51918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4117 -1.8599 1.1547 6 7 2.0600 -0.0684 2.4151 7 6 1.4960 1.2828 2.5549 8 6 0.5318 1.2812 3.7517 9 7 1.2341 0.7760 4.9390 10 6 0.4046 0.9212 6.1427 11 6 0.1965 2.3848 6.4358 12 1 0.6368 3.1322 5.7925 13 6 -0.5551 2.7695 7.5259 14 7 -1.0899 1.8592 8.3101 15 14 -0.8124 4.5836 7.8896 16 1 -0.1113 5.3982 6.8648 17 1 -2.2644 4.8934 7.8590 18 1 -0.2666 4.9012 9.2336 19 6 1.6556 -0.6192 4.7553 20 6 2.6604 -0.6979 3.6011 21 6 2.0400 -0.7213 -1.2493 22 6 1.6358 -0.1495 -2.6096 23 6 1.0102 -1.4543 -2.1126 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 2.9703 1.4236 0.0004 28 1 2.2993 1.9986 2.7290 29 1 0.9546 1.5493 1.6472 30 1 -0.3220 0.6396 3.5336 31 1 0.1851 2.2975 3.9392 32 1 -0.5609 0.4427 5.9785 33 1 0.9052 0.4490 6.9880 34 1 -1.6183 2.1299 9.0771 35 1 0.7861 -1.2343 4.5233 36 1 2.1239 -0.9811 5.6706 37 1 2.8892 -1.7415 3.3853 38 1 3.5736 -0.1688 3.8738 39 1 3.0324 -1.1641 -1.1642 40 1 1.0062 0.7403 -2.6146 41 1 2.3622 -0.2163 -3.4195 42 1 -0.0306 -1.4227 -1.7905 43 1 1.3253 -2.3795 -2.5952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:36 Heat of formation + Delta-G solvation = -63.357996 kcal Electronic energy + Delta-G solvation = -23415.410461 eV Core-core repulsion = 20074.995842 eV Total energy + Delta-G solvation = -3340.414619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.84392 -39.59982 -38.51796 -36.76224 -35.76479 -34.35086 -32.43981 -31.34085 -29.98939 -27.51255 -26.09873 -24.73097 -23.97971 -23.21199 -22.58528 -21.02188 -20.16455 -18.80005 -18.49709 -17.73364 -17.24452 -16.67677 -16.64930 -16.01839 -15.67834 -15.53887 -15.41611 -15.19297 -14.74908 -14.46210 -14.14804 -13.94692 -13.64011 -13.38756 -13.15424 -13.07754 -12.83099 -12.72307 -12.60051 -12.35733 -12.28862 -12.11844 -12.09263 -11.83156 -11.51235 -11.35039 -11.27701 -11.12508 -10.62904 -10.38311 -9.79046 -9.08101 -8.20664 -6.31070 1.39916 1.43265 1.44107 1.57585 1.86149 2.41189 2.75566 3.11469 3.16593 3.26202 3.30093 3.59774 3.87364 3.97676 4.03486 4.06688 4.20362 4.21831 4.28129 4.41717 4.47899 4.56787 4.66292 4.70610 4.73627 4.85040 4.88177 4.94291 4.96293 5.02553 5.11476 5.17836 5.21606 5.26232 5.29311 5.42924 5.63865 6.01508 6.19191 6.35166 6.54405 6.58445 6.85021 7.02947 7.39117 8.91020 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.003947 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.927031 B = 7092.210867 C = 7585.899074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.164 3.836 3 O -0.539 6.539 4 C 0.489 3.511 5 O -0.574 6.574 6 N -0.600 5.600 7 C 0.120 3.880 8 C 0.047 3.953 9 N -0.537 5.537 10 C 0.207 3.793 11 C -0.520 4.520 12 H 0.070 0.930 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.971 3.029 16 H -0.258 1.258 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.043 3.957 20 C 0.123 3.877 21 C -0.186 4.186 22 C -0.144 4.144 23 C -0.177 4.177 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.393 0.607 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.012 0.988 31 H 0.084 0.916 32 H -0.042 1.042 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.012 0.988 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 -1.687 -20.949 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.120 3.880 3 O -0.347 6.347 4 C 0.277 3.723 5 O -0.454 6.454 6 N -0.332 5.332 7 C -0.002 4.002 8 C -0.082 4.082 9 N -0.262 5.262 10 C 0.081 3.919 11 C -0.558 4.558 12 H 0.088 0.912 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.182 1.182 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.086 4.086 20 C 0.000 4.000 21 C -0.205 4.205 22 C -0.181 4.181 23 C -0.214 4.214 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.244 0.756 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.030 0.970 31 H 0.103 0.897 32 H -0.024 1.024 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.591 -1.889 -20.768 21.590 hybrid contribution -0.459 -0.321 1.084 1.220 sum 5.132 -2.209 -19.684 20.462 Atomic orbital electron populations 1.22042 0.90315 1.03471 1.04634 1.20583 0.96276 0.82192 0.88945 1.86559 1.28629 1.23212 1.96298 1.21958 0.77834 0.86719 0.85799 1.90653 1.49917 1.18677 1.86145 1.48342 1.57758 1.18165 1.08958 1.22359 0.97294 0.82007 0.98528 1.22528 0.94515 1.00910 0.90222 1.62036 1.42644 1.17864 1.03607 1.19394 0.88738 0.96583 0.87178 1.21481 1.30942 0.92362 1.11060 0.91227 1.25949 0.95286 1.02726 0.95807 1.70104 1.35404 1.35388 1.16850 0.85301 0.77808 0.79065 0.78253 1.18180 1.20602 1.20674 1.22425 0.97426 0.89698 0.99025 1.21657 0.95697 0.99312 0.83329 1.22547 1.00753 1.05756 0.91409 1.22984 1.03246 0.97296 0.94570 1.23214 0.98572 0.96951 1.02645 0.90479 0.91687 0.88370 0.75631 0.89900 0.85488 0.97013 0.89732 1.02437 0.97727 0.92736 0.96972 0.90049 0.89349 0.89661 0.88391 0.87563 0.87420 0.87577 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 7.16 71.98 0.52 -2.35 16 2 C 0.16 3.39 0.77 -11.54 -0.01 3.38 16 3 O -0.54 -9.39 9.98 -148.98 -1.49 -10.87 16 4 C 0.49 13.71 6.61 87.66 0.58 14.29 16 5 O -0.57 -19.73 15.46 -3.04 -0.05 -19.78 16 6 N -0.60 -17.29 3.00 -817.05 -2.45 -19.75 16 7 C 0.12 3.33 5.30 86.50 0.46 3.79 16 8 C 0.05 1.74 5.47 86.54 0.47 2.22 16 9 N -0.54 -22.79 4.62 -898.86 -4.15 -26.94 16 10 C 0.21 11.00 4.72 85.56 0.40 11.40 16 11 C -0.52 -28.75 8.41 25.60 0.22 -28.54 16 12 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.94 -56.12 13.29 21.45 0.28 -55.83 16 15 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 19 C 0.04 1.60 5.62 86.38 0.49 2.09 16 20 C 0.12 3.77 6.61 86.35 0.57 4.35 16 21 C -0.19 -3.47 4.84 -10.77 -0.05 -3.53 16 22 C -0.14 -1.95 9.80 30.60 0.30 -1.65 16 23 C -0.18 -2.84 9.57 30.62 0.29 -2.54 16 24 H 0.08 1.53 6.98 -2.39 -0.02 1.51 16 25 H 0.06 1.40 6.40 -2.39 -0.02 1.39 16 26 H 0.10 1.49 7.07 -2.38 -0.02 1.48 16 27 H 0.39 4.90 9.04 -74.06 -0.67 4.23 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.13 3.04 3.73 -2.39 -0.01 3.03 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 3.33 6.67 -2.39 -0.02 3.31 16 32 H -0.04 -2.46 8.12 -2.38 -0.02 -2.48 16 33 H 0.00 0.27 7.97 -2.39 -0.02 0.25 16 34 H 0.26 14.84 8.31 -92.71 -0.77 14.06 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.08 2.95 7.99 -2.39 -0.02 2.93 16 37 H 0.09 2.72 7.04 -2.39 -0.02 2.70 16 38 H 0.09 2.43 8.14 -2.38 -0.02 2.42 16 39 H 0.10 2.10 7.84 -2.39 -0.02 2.08 16 40 H 0.11 1.34 7.61 -2.38 -0.02 1.32 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.60 5.85 -2.39 -0.01 1.59 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.77 334.16 -0.79 -68.55 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.34 Total: 15.92 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 4.70 Total: 3.36 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -6.32 Total: -102.52 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.53 Total: -30.65 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -67.77 -0.79 -68.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.194 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds