Wall clock time and date at job start Tue Mar 31 2020 01:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 110.45847 * 2 1 4 4 O 1.21276 * 119.99974 * 123.10704 * 3 2 1 5 5 N 1.34771 * 119.99932 * 303.11419 * 3 2 1 6 6 C 1.47079 * 120.88362 * 354.81860 * 5 3 2 7 7 C 1.53240 * 108.52085 * 231.20929 * 6 5 3 8 8 N 1.46895 * 109.34327 * 306.16917 * 7 6 5 9 9 C 1.46896 * 111.00291 * 187.25444 * 8 7 6 10 10 C 1.50703 * 109.46963 * 169.99624 * 9 8 7 11 11 H 1.07990 * 120.00287 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99462 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00446 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99580 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47101 * 180.02562 * 14 12 10 16 16 H 1.48501 * 109.46967 * 60.00306 * 14 12 10 17 17 H 1.48502 * 109.47543 * 300.00405 * 14 12 10 18 18 C 1.46899 * 111.27005 * 63.10103 * 8 7 6 19 19 C 1.47080 * 120.88264 * 174.84370 * 5 3 2 20 20 C 1.54511 * 110.51270 * 122.60785 * 2 1 3 21 21 C 1.54791 * 103.91241 * 118.81500 * 20 2 1 22 22 O 1.44428 * 104.80449 * 335.91912 * 21 20 2 23 23 C 1.44425 * 105.27550 * 40.58487 * 22 21 20 24 24 H 1.08996 * 109.47272 * 66.20763 * 1 2 3 25 25 H 1.08997 * 109.47112 * 186.20573 * 1 2 3 26 26 H 1.09007 * 109.46905 * 306.20847 * 1 2 3 27 27 H 1.09002 * 109.63222 * 111.49912 * 6 5 3 28 28 H 1.09005 * 109.62824 * 350.91817 * 6 5 3 29 29 H 1.09000 * 109.49044 * 186.20603 * 7 6 5 30 30 H 1.09004 * 109.49087 * 66.12926 * 7 6 5 31 31 H 1.09006 * 109.47239 * 49.99801 * 9 8 7 32 32 H 1.08999 * 109.47178 * 290.00292 * 9 8 7 33 33 H 0.96999 * 120.00078 * 359.97438 * 13 12 10 34 34 H 1.09006 * 109.48752 * 56.85606 * 18 8 7 35 35 H 1.08994 * 109.49567 * 176.93844 * 18 8 7 36 36 H 1.08997 * 109.62882 * 248.50078 * 19 5 3 37 37 H 1.09001 * 109.62559 * 9.08264 * 19 5 3 38 38 H 1.09004 * 110.50927 * 237.42878 * 20 2 1 39 39 H 1.08999 * 110.50801 * 0.13178 * 20 2 1 40 40 H 1.08999 * 110.30702 * 217.11445 * 21 20 2 41 41 H 1.09008 * 110.53177 * 94.82921 * 21 20 2 42 42 H 1.08991 * 110.37409 * 200.65747 * 23 22 21 43 43 H 1.09001 * 110.37001 * 78.32314 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.8062 1.7796 0.8798 5 7 1.6948 2.2662 -0.9776 6 6 0.8793 1.8114 -2.1139 7 6 1.5688 2.2445 -3.4121 8 7 1.8225 3.6908 -3.3692 9 6 2.3250 4.1757 -4.6615 10 6 2.3403 5.6827 -4.6610 11 1 2.0102 6.2258 -3.7879 12 6 2.7768 6.3680 -5.7750 13 7 3.1793 5.7066 -6.8381 14 14 2.7965 8.2359 -5.7742 15 1 3.3044 8.7261 -7.0806 16 1 3.6816 8.7210 -4.6849 17 1 1.4188 8.7454 -5.5565 18 6 2.7466 4.0377 -2.2813 19 6 2.1054 3.6780 -0.9367 20 6 2.0714 -0.7798 1.2190 21 6 2.8801 -1.9399 0.5895 22 8 2.3101 -2.1158 -0.7258 23 6 2.0712 -0.7796 -1.2189 24 1 -0.3633 0.4146 -0.9403 25 1 -0.3633 -1.0216 0.1111 26 1 -0.3633 0.6071 0.8293 27 1 -0.1114 2.2623 -2.0574 28 1 0.7922 0.7251 -2.0905 29 1 0.9248 2.0132 -4.2606 30 1 2.5143 1.7123 -3.5169 31 1 1.6753 3.8193 -5.4610 32 1 3.3363 3.8020 -4.8215 33 1 3.1694 4.7367 -6.8384 34 1 3.6757 3.4805 -2.4018 35 1 2.9568 5.1068 -2.3096 36 1 1.2325 4.3084 -0.7671 37 1 2.8288 3.8258 -0.1349 38 1 2.7200 -0.1440 1.8218 39 1 1.2490 -1.1673 1.8204 40 1 2.7603 -2.8484 1.1797 41 1 3.9345 -1.6739 0.5136 42 1 1.3302 -0.7967 -2.0179 43 1 3.0010 -0.3336 -1.5722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:47 Heat of formation + Delta-G solvation = -65.234055 kcal Electronic energy + Delta-G solvation = -23563.379868 eV Core-core repulsion = 20222.883897 eV Total energy + Delta-G solvation = -3340.495971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12043 -38.91278 -37.57579 -34.89450 -33.81148 -32.55795 -31.04187 -29.83367 -28.15336 -26.87530 -25.37384 -23.67283 -23.24533 -22.54594 -21.77317 -20.19279 -18.75633 -17.38806 -16.91246 -16.51437 -15.99953 -15.65074 -15.14921 -14.74623 -14.70763 -14.38398 -14.33986 -13.85904 -13.66420 -13.50472 -13.20700 -12.80774 -12.53242 -12.32403 -12.17201 -11.76896 -11.52694 -11.43029 -11.32595 -11.24517 -11.11060 -10.95406 -10.76186 -10.62087 -10.36378 -10.10302 -10.02357 -9.69770 -8.86999 -8.53082 -8.44097 -7.49656 -6.43306 -4.13197 2.51998 2.91291 3.41483 3.43189 3.61801 3.67788 4.05605 4.34270 4.43622 4.46416 4.61346 4.65640 4.90229 4.92203 5.05977 5.15226 5.26206 5.31649 5.32390 5.34115 5.42109 5.45042 5.53492 5.55446 5.65997 5.68883 5.76834 5.81115 5.86311 5.91095 6.02391 6.25538 6.38619 6.46217 6.58844 6.88576 6.96993 7.39536 7.64674 7.82005 8.09884 8.20671 8.48964 8.79156 9.57666 10.95784 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034502 B = 0.003847 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.343461 B = 7277.360610 C = 7576.326796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.526 3.474 4 O -0.544 6.544 5 N -0.603 5.603 6 C 0.100 3.900 7 C 0.036 3.964 8 N -0.528 5.528 9 C 0.183 3.817 10 C -0.591 4.591 11 H 0.058 0.942 12 C 0.015 3.985 13 N -0.912 5.912 14 Si 1.072 2.928 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.287 1.287 18 C 0.052 3.948 19 C 0.115 3.885 20 C -0.141 4.141 21 C 0.044 3.956 22 O -0.370 6.370 23 C 0.058 3.942 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.022 0.978 32 H -0.019 1.019 33 H 0.266 0.734 34 H 0.024 0.976 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.058 -13.413 13.542 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C 0.314 3.686 4 O -0.421 6.421 5 N -0.335 5.335 6 C -0.023 4.023 7 C -0.093 4.093 8 N -0.253 5.253 9 C 0.058 3.942 10 C -0.630 4.630 11 H 0.076 0.924 12 C -0.188 4.188 13 N -0.548 5.548 14 Si 0.900 3.100 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.213 1.213 18 C -0.077 4.077 19 C -0.007 4.007 20 C -0.179 4.179 21 C -0.033 4.033 22 O -0.289 6.289 23 C -0.019 4.019 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.040 0.960 32 H -0.002 1.002 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.775 -11.842 13.050 18.257 hybrid contribution 0.395 -1.533 0.726 1.741 sum -4.380 -13.375 13.776 19.694 Atomic orbital electron populations 1.22076 0.91281 1.03260 1.03528 1.22131 0.98452 0.93247 0.98069 1.20213 0.80389 0.86672 0.81363 1.90643 1.36167 1.77866 1.37464 1.48137 1.52282 1.10478 1.22632 1.22339 0.95046 0.99650 0.85271 1.22459 0.99106 0.91121 0.96627 1.61997 1.46665 1.10074 1.06542 1.19833 0.92520 0.96823 0.85004 1.21941 1.47342 0.90505 1.03180 0.92391 1.25859 0.93541 1.07214 0.92227 1.70804 1.44392 1.09732 1.29911 0.83492 0.76525 0.73990 0.75999 1.20816 1.21427 1.21322 1.22343 0.92899 1.02743 0.89716 1.21886 1.00396 0.79802 0.98656 1.23082 1.01070 0.96902 0.96868 1.23518 0.97138 0.98768 0.83832 1.89133 1.82977 1.25317 1.31430 1.23637 1.00567 0.82719 0.95025 0.90768 0.90942 0.91741 0.90306 0.89209 0.89949 0.95496 0.95997 1.00166 0.92338 0.95800 0.88284 0.90739 0.89259 0.88105 0.90013 0.88811 0.92027 0.87819 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 7.94 37.16 0.29 -0.99 16 2 C -0.12 -1.28 0.69 -154.09 -0.11 -1.38 16 3 C 0.53 7.57 6.41 -10.98 -0.07 7.50 16 4 O -0.54 -9.45 14.73 5.56 0.08 -9.37 16 5 N -0.60 -8.73 3.00 -172.46 -0.52 -9.25 16 6 C 0.10 1.27 4.72 -3.60 -0.02 1.25 16 7 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 8 N -0.53 -10.73 4.62 -235.77 -1.09 -11.82 16 9 C 0.18 4.57 4.04 -4.98 -0.02 4.55 16 10 C -0.59 -16.22 8.41 -34.44 -0.29 -16.51 16 11 H 0.06 1.58 7.12 -52.49 -0.37 1.21 16 12 C 0.02 0.43 5.46 -17.82 -0.10 0.34 16 13 N -0.91 -27.29 13.65 55.43 0.76 -26.53 16 14 Si 1.07 24.77 29.90 -169.99 -5.08 19.69 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 18 C 0.05 0.99 5.46 -3.70 -0.02 0.97 16 19 C 0.11 1.84 6.61 -3.60 -0.02 1.81 16 20 C -0.14 -1.44 6.34 -24.99 -0.16 -1.60 16 21 C 0.04 0.43 7.64 38.10 0.29 0.72 16 22 O -0.37 -4.33 11.65 -35.23 -0.41 -4.74 16 23 C 0.06 0.63 5.56 37.93 0.21 0.84 16 24 H 0.07 0.62 5.07 -51.93 -0.26 0.35 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 28 H 0.09 0.91 2.60 -51.93 -0.14 0.77 16 29 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.57 7.84 -51.93 -0.41 0.17 16 32 H -0.02 -0.51 7.99 -51.93 -0.41 -0.93 16 33 H 0.27 7.93 7.22 -40.82 -0.29 7.64 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.44 7.04 -51.93 -0.37 1.07 16 38 H 0.10 1.19 6.50 -51.93 -0.34 0.86 16 39 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.10 0.97 6.18 -51.93 -0.32 0.65 16 43 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -31.93 326.66 -8.02 -39.95 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.66 Total: -0.93 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.03 Total: -1.93 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.85 Total: -47.59 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.33 Total: -14.11 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.93 -8.02 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.280 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds