Wall clock time and date at job start Tue Mar 31 2020 01:57:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50704 * 110.45210 * 2 1
4 4 O 1.21277 * 120.00168 * 245.88234 * 3 2 1
5 5 N 1.34776 * 120.00058 * 65.89052 * 3 2 1
6 6 C 1.47072 * 120.88395 * 174.74334 * 5 3 2
7 7 C 1.53243 * 108.52638 * 231.16193 * 6 5 3
8 8 N 1.46897 * 109.33785 * 306.17411 * 7 6 5
9 9 C 1.46901 * 111.00015 * 187.25278 * 8 7 6
10 10 C 1.50697 * 109.47022 * 169.99819 * 9 8 7
11 11 H 1.07993 * 120.00382 * 359.97438 * 10 9 8
12 12 C 1.37881 * 119.99726 * 179.72383 * 10 9 8
13 13 N 1.31514 * 120.00193 * 180.27274 * 12 10 9
14 14 Si 1.86805 * 120.00035 * 0.27275 * 12 10 9
15 15 H 1.48500 * 109.47199 * 89.99798 * 14 12 10
16 16 H 1.48499 * 109.47014 * 210.00054 * 14 12 10
17 17 H 1.48501 * 109.46919 * 330.00064 * 14 12 10
18 18 C 1.46896 * 111.27286 * 63.09519 * 8 7 6
19 19 C 1.47089 * 120.87935 * 354.72184 * 5 3 2
20 20 C 1.54505 * 110.63055 * 237.31761 * 2 1 3
21 21 C 1.54482 * 104.06355 * 241.29549 * 20 2 1
22 22 O 1.44421 * 104.80018 * 336.01935 * 21 20 2
23 23 C 1.44427 * 105.27524 * 40.51523 * 22 21 20
24 24 H 1.09000 * 109.47353 * 65.74850 * 1 2 3
25 25 H 1.09003 * 109.47158 * 185.74449 * 1 2 3
26 26 H 1.08994 * 109.47158 * 305.74244 * 1 2 3
27 27 H 1.09000 * 109.62986 * 111.45258 * 6 5 3
28 28 H 1.08997 * 109.62999 * 350.87520 * 6 5 3
29 29 H 1.08997 * 109.49313 * 186.20655 * 7 6 5
30 30 H 1.08998 * 109.51169 * 66.14110 * 7 6 5
31 31 H 1.09002 * 109.47048 * 49.99147 * 9 8 7
32 32 H 1.09005 * 109.46785 * 289.99608 * 9 8 7
33 33 H 0.96993 * 120.00077 * 180.02562 * 13 12 10
34 34 H 1.09006 * 109.49061 * 56.86219 * 18 8 7
35 35 H 1.09001 * 109.49265 * 176.93683 * 18 8 7
36 36 H 1.09000 * 109.62438 * 248.54809 * 19 5 3
37 37 H 1.08997 * 109.62722 * 9.12415 * 19 5 3
38 38 H 1.08998 * 110.50995 * 359.94021 * 20 2 1
39 39 H 1.08994 * 110.51371 * 122.64944 * 20 2 1
40 40 H 1.09001 * 110.37047 * 217.18986 * 21 20 2
41 41 H 1.08999 * 110.46399 * 94.89868 * 21 20 2
42 42 H 1.08998 * 110.36950 * 200.65599 * 23 22 21
43 43 H 1.08998 * 110.37355 * 78.31805 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0566 1.4120 0.0000
4 8 2.6706 1.8303 -0.9586
5 7 1.8454 2.2101 1.0654
6 6 2.4468 3.5503 1.1357
7 6 3.1693 3.6899 2.4799
8 7 2.2368 3.3695 3.5689
9 6 2.8380 3.6564 4.8782
10 6 1.7828 3.5525 5.9490
11 1 0.7671 3.2991 5.6835
12 6 2.1152 3.7758 7.2684
13 7 1.1955 3.6798 8.2036
14 14 3.8719 4.2147 7.7276
15 1 4.0384 5.6899 7.6946
16 1 4.1661 3.7138 9.0943
17 1 4.8077 3.5892 6.7590
18 6 1.7859 1.9736 3.4910
19 6 1.0068 1.7638 2.1884
20 6 2.0744 -0.7808 -1.2170
21 6 2.8802 -1.9398 -0.5896
22 8 3.2418 -1.4677 0.7265
23 6 2.0713 -0.7796 1.2188
24 1 -0.3634 0.4221 -0.9370
25 1 -0.3633 -1.0225 0.1029
26 1 -0.3633 0.6003 0.8341
27 1 1.6656 4.3067 1.0597
28 1 3.1609 3.6744 0.3216
29 1 3.5268 4.7130 2.5962
30 1 4.0151 3.0032 2.5116
31 1 3.2537 4.6640 4.8742
32 1 3.6317 2.9367 5.0791
33 1 1.4293 3.8373 9.1317
34 1 2.6508 1.3105 3.5084
35 1 1.1401 1.7521 4.3408
36 1 0.0872 2.3484 2.2135
37 1 0.7688 0.7067 2.0701
38 1 1.2535 -1.1689 -1.8200
39 1 2.7244 -0.1456 -1.8187
40 1 3.7745 -2.1428 -1.1788
41 1 2.2641 -2.8359 -0.5152
42 1 2.3441 -0.0914 2.0188
43 1 1.3295 -1.4967 1.5706
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602204269.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 01:57:49
Heat of formation + Delta-G solvation = -57.163413 kcal
Electronic energy + Delta-G solvation = -23744.059385 eV
Core-core repulsion = 20403.913384 eV
Total energy + Delta-G solvation = -3340.146001 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.10689 -38.80531 -37.54226 -34.79172 -33.84196 -32.39586 -31.07540 -29.70639
-28.76654 -26.69822 -25.93698 -23.59087 -23.38817 -22.46989 -21.19391 -20.15504
-18.63024 -17.03036 -16.88184 -16.64337 -16.14371 -15.67043 -14.92588 -14.83318
-14.68247 -14.63832 -14.15722 -13.89901 -13.70117 -13.43665 -12.97213 -12.89615
-12.48474 -12.42683 -12.11902 -11.82852 -11.64108 -11.58361 -11.25703 -11.21914
-11.07929 -10.86040 -10.79772 -10.57824 -10.38230 -10.06071 -9.94583 -9.54082
-9.38356 -8.63438 -8.57036 -7.51371 -6.12113 -4.10272 2.59288 2.98582
3.24597 3.32539 3.34506 3.77435 4.11090 4.30128 4.36513 4.55621
4.65680 4.73308 4.91251 5.01222 5.14680 5.17954 5.22553 5.29215
5.30702 5.35422 5.46820 5.49557 5.51534 5.55608 5.64780 5.68401
5.72165 5.85392 5.91018 5.99467 6.13724 6.30762 6.35955 6.53642
6.58770 6.76446 6.88098 7.43930 7.49032 7.76701 7.90176 8.16628
8.55982 8.94446 9.49512 11.00626
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.025744 B = 0.004399 C = 0.004249
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1087.369488 B = 6362.844823 C = 6588.169866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.116 4.116
3 C 0.532 3.468
4 O -0.545 6.545
5 N -0.606 5.606
6 C 0.119 3.881
7 C 0.037 3.963
8 N -0.525 5.525
9 C 0.162 3.838
10 C -0.512 4.512
11 H 0.082 0.918
12 C 0.071 3.929
13 N -0.898 5.898
14 Si 0.874 3.126
15 H -0.275 1.275
16 H -0.286 1.286
17 H -0.268 1.268
18 C 0.046 3.954
19 C 0.096 3.904
20 C -0.142 4.142
21 C 0.044 3.956
22 O -0.369 6.369
23 C 0.047 3.953
24 H 0.066 0.934
25 H 0.071 0.929
26 H 0.075 0.925
27 H 0.075 0.925
28 H 0.088 0.912
29 H 0.082 0.918
30 H 0.028 0.972
31 H 0.026 0.974
32 H -0.010 1.010
33 H 0.264 0.736
34 H 0.027 0.973
35 H 0.105 0.895
36 H 0.081 0.919
37 H 0.090 0.910
38 H 0.082 0.918
39 H 0.098 0.902
40 H 0.092 0.908
41 H 0.060 0.940
42 H 0.104 0.896
43 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.744 -9.195 -16.619 19.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.119 4.119
3 C 0.319 3.681
4 O -0.423 6.423
5 N -0.338 5.338
6 C -0.003 4.003
7 C -0.092 4.092
8 N -0.250 5.250
9 C 0.036 3.964
10 C -0.551 4.551
11 H 0.100 0.900
12 C -0.131 4.131
13 N -0.537 5.537
14 Si 0.701 3.299
15 H -0.201 1.201
16 H -0.211 1.211
17 H -0.193 1.193
18 C -0.083 4.083
19 C -0.027 4.027
20 C -0.179 4.179
21 C -0.033 4.033
22 O -0.288 6.288
23 C -0.030 4.030
24 H 0.085 0.915
25 H 0.090 0.910
26 H 0.094 0.906
27 H 0.093 0.907
28 H 0.106 0.894
29 H 0.101 0.899
30 H 0.046 0.954
31 H 0.044 0.956
32 H 0.007 0.993
33 H 0.074 0.926
34 H 0.045 0.955
35 H 0.123 0.877
36 H 0.099 0.901
37 H 0.108 0.892
38 H 0.101 0.899
39 H 0.116 0.884
40 H 0.110 0.890
41 H 0.078 0.922
42 H 0.122 0.878
43 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.645 -8.672 -16.856 18.967
hybrid contribution 1.372 -0.156 0.529 1.478
sum 0.726 -8.828 -16.327 18.575
Atomic orbital electron populations
1.22077 0.91153 1.03369 1.03720 1.22117 0.98059 0.93710 0.98062
1.20133 0.79211 0.86646 0.82084 1.90626 1.42227 1.75369 1.34079
1.48140 1.49834 1.16681 1.19161 1.21740 0.97975 0.82873 0.97707
1.22472 0.93953 1.01327 0.91452 1.61896 1.38902 1.20467 1.03693
1.20192 0.94846 0.95417 0.85952 1.20987 0.96692 1.47801 0.89573
0.90049 1.24881 0.96926 0.94930 0.96398 1.69880 1.33186 1.49798
1.00839 0.86884 0.85791 0.79205 0.78012 1.20094 1.21150 1.19309
1.22431 0.98999 0.89819 0.97013 1.22389 0.94456 1.00223 0.85584
1.23043 1.00909 0.97076 0.96914 1.23446 0.99648 0.95972 0.84194
1.89187 1.34917 1.73628 1.31050 1.23901 0.88536 0.95117 0.95482
0.91482 0.91007 0.90599 0.90719 0.89384 0.89928 0.95362 0.95567
0.99273 0.92578 0.95481 0.87692 0.90073 0.89186 0.89924 0.88358
0.88992 0.92174 0.87779 0.90800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.27 7.98 37.16 0.30 -0.97 16
2 C -0.12 -1.32 0.69 -154.09 -0.11 -1.42 16
3 C 0.53 7.85 6.51 -10.98 -0.07 7.78 16
4 O -0.55 -9.61 14.80 5.56 0.08 -9.53 16
5 N -0.61 -8.82 2.93 -172.46 -0.51 -9.33 16
6 C 0.12 1.79 6.58 -3.60 -0.02 1.77 16
7 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16
8 N -0.52 -10.30 4.62 -235.77 -1.09 -11.39 16
9 C 0.16 3.77 3.79 -4.98 -0.02 3.75 16
10 C -0.51 -13.86 8.96 -34.44 -0.31 -14.16 16
11 H 0.08 2.36 7.37 -52.49 -0.39 1.98 16
12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
13 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16
14 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16
15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
17 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16
18 C 0.05 0.80 5.26 -3.71 -0.02 0.78 16
19 C 0.10 1.30 4.17 -3.60 -0.02 1.28 16
20 C -0.14 -1.47 6.31 -25.16 -0.16 -1.63 16
21 C 0.04 0.44 7.63 37.93 0.29 0.73 16
22 O -0.37 -5.01 11.65 -35.23 -0.41 -5.42 16
23 C 0.05 0.54 5.36 37.93 0.20 0.75 16
24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
25 H 0.07 0.48 8.01 -51.93 -0.42 0.07 16
26 H 0.08 0.66 5.28 -51.93 -0.27 0.38 16
27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
28 H 0.09 1.32 7.10 -51.93 -0.37 0.95 16
29 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16
30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.03 0.61 7.40 -51.93 -0.38 0.23 16
32 H -0.01 -0.25 7.17 -51.93 -0.37 -0.62 16
33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
34 H 0.03 0.48 7.26 -51.93 -0.38 0.10 16
35 H 0.10 1.98 6.67 -51.93 -0.35 1.64 16
36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16
37 H 0.09 0.99 3.30 -51.93 -0.17 0.82 16
38 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16
39 H 0.10 1.23 6.54 -51.93 -0.34 0.89 16
40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16
41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
42 H 0.10 1.36 4.75 -51.93 -0.25 1.12 16
43 H 0.07 0.69 7.78 -51.93 -0.40 0.28 16
LS Contribution 322.04 15.07 4.85 4.85
Total: -1.00 -32.02 322.04 -7.62 -39.65
By element:
Atomic # 1 Polarization: 6.17 SS G_CDS: -6.61 Total: -0.44 kcal
Atomic # 6 Polarization: 1.19 SS G_CDS: -0.05 Total: 1.14 kcal
Atomic # 7 Polarization: -45.77 SS G_CDS: -0.82 Total: -46.59 kcal
Atomic # 8 Polarization: -14.62 SS G_CDS: -0.33 Total: -14.95 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal
Total LS contribution 4.85 Total: 4.85 kcal
Total: -32.02 -7.62 -39.65 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602204269.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.515 kcal
(2) G-P(sol) polarization free energy of solvation -32.024 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.163 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds