Wall clock time and date at job start Tue Mar 31 2020 01:57:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50704 * 110.45210 * 2 1
4 4 O 1.21277 * 120.00168 * 245.88234 * 3 2 1
5 5 N 1.34776 * 120.00058 * 65.89052 * 3 2 1
6 6 C 1.47072 * 120.88395 * 174.74334 * 5 3 2
7 7 C 1.53243 * 108.52638 * 231.16193 * 6 5 3
8 8 N 1.46897 * 109.33785 * 306.17411 * 7 6 5
9 9 C 1.46901 * 111.00015 * 187.25278 * 8 7 6
10 10 C 1.50697 * 109.47022 * 169.99819 * 9 8 7
11 11 H 1.07993 * 120.00382 * 359.97438 * 10 9 8
12 12 C 1.37881 * 119.99726 * 179.72383 * 10 9 8
13 13 N 1.31514 * 120.00193 * 180.27274 * 12 10 9
14 14 Si 1.86805 * 120.00035 * 0.27275 * 12 10 9
15 15 H 1.48500 * 109.47199 * 89.99798 * 14 12 10
16 16 H 1.48499 * 109.47014 * 210.00054 * 14 12 10
17 17 H 1.48501 * 109.46919 * 330.00064 * 14 12 10
18 18 C 1.46896 * 111.27286 * 63.09519 * 8 7 6
19 19 C 1.47089 * 120.87935 * 354.72184 * 5 3 2
20 20 C 1.54505 * 110.63055 * 237.31761 * 2 1 3
21 21 C 1.54482 * 104.06355 * 241.29549 * 20 2 1
22 22 O 1.44421 * 104.80018 * 336.01935 * 21 20 2
23 23 C 1.44427 * 105.27524 * 40.51523 * 22 21 20
24 24 H 1.09000 * 109.47353 * 65.74850 * 1 2 3
25 25 H 1.09003 * 109.47158 * 185.74449 * 1 2 3
26 26 H 1.08994 * 109.47158 * 305.74244 * 1 2 3
27 27 H 1.09000 * 109.62986 * 111.45258 * 6 5 3
28 28 H 1.08997 * 109.62999 * 350.87520 * 6 5 3
29 29 H 1.08997 * 109.49313 * 186.20655 * 7 6 5
30 30 H 1.08998 * 109.51169 * 66.14110 * 7 6 5
31 31 H 1.09002 * 109.47048 * 49.99147 * 9 8 7
32 32 H 1.09005 * 109.46785 * 289.99608 * 9 8 7
33 33 H 0.96993 * 120.00077 * 180.02562 * 13 12 10
34 34 H 1.09006 * 109.49061 * 56.86219 * 18 8 7
35 35 H 1.09001 * 109.49265 * 176.93683 * 18 8 7
36 36 H 1.09000 * 109.62438 * 248.54809 * 19 5 3
37 37 H 1.08997 * 109.62722 * 9.12415 * 19 5 3
38 38 H 1.08998 * 110.50995 * 359.94021 * 20 2 1
39 39 H 1.08994 * 110.51371 * 122.64944 * 20 2 1
40 40 H 1.09001 * 110.37047 * 217.18986 * 21 20 2
41 41 H 1.08999 * 110.46399 * 94.89868 * 21 20 2
42 42 H 1.08998 * 110.36950 * 200.65599 * 23 22 21
43 43 H 1.08998 * 110.37355 * 78.31805 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0566 1.4120 0.0000
4 8 2.6706 1.8303 -0.9586
5 7 1.8454 2.2101 1.0654
6 6 2.4468 3.5503 1.1357
7 6 3.1693 3.6899 2.4799
8 7 2.2368 3.3695 3.5689
9 6 2.8380 3.6564 4.8782
10 6 1.7828 3.5525 5.9490
11 1 0.7671 3.2991 5.6835
12 6 2.1152 3.7758 7.2684
13 7 1.1955 3.6798 8.2036
14 14 3.8719 4.2147 7.7276
15 1 4.0384 5.6899 7.6946
16 1 4.1661 3.7138 9.0943
17 1 4.8077 3.5892 6.7590
18 6 1.7859 1.9736 3.4910
19 6 1.0068 1.7638 2.1884
20 6 2.0744 -0.7808 -1.2170
21 6 2.8802 -1.9398 -0.5896
22 8 3.2418 -1.4677 0.7265
23 6 2.0713 -0.7796 1.2188
24 1 -0.3634 0.4221 -0.9370
25 1 -0.3633 -1.0225 0.1029
26 1 -0.3633 0.6003 0.8341
27 1 1.6656 4.3067 1.0597
28 1 3.1609 3.6744 0.3216
29 1 3.5268 4.7130 2.5962
30 1 4.0151 3.0032 2.5116
31 1 3.2537 4.6640 4.8742
32 1 3.6317 2.9367 5.0791
33 1 1.4293 3.8373 9.1317
34 1 2.6508 1.3105 3.5084
35 1 1.1401 1.7521 4.3408
36 1 0.0872 2.3484 2.2135
37 1 0.7688 0.7067 2.0701
38 1 1.2535 -1.1689 -1.8200
39 1 2.7244 -0.1456 -1.8187
40 1 3.7745 -2.1428 -1.1788
41 1 2.2641 -2.8359 -0.5152
42 1 2.3441 -0.0914 2.0188
43 1 1.3295 -1.4967 1.5706
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602204269.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 01:57:48
Heat of formation + Delta-G solvation = -80.942610 kcal
Electronic energy + Delta-G solvation = -23745.090529 eV
Core-core repulsion = 20403.913384 eV
Total energy + Delta-G solvation = -3341.177145 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.15358 -39.91756 -38.85969 -36.18720 -34.96263 -34.28949 -32.29243 -30.71168
-30.35736 -27.63693 -27.34658 -24.84921 -24.52335 -23.61423 -22.77941 -21.36625
-19.79193 -18.94544 -18.05091 -17.76053 -17.08304 -16.69354 -16.53214 -16.11912
-15.99296 -15.79547 -15.70361 -15.21672 -14.99120 -14.49348 -14.38090 -14.13703
-13.82611 -13.54443 -13.24522 -13.09857 -12.92186 -12.73694 -12.55632 -12.47113
-12.29600 -12.20265 -12.01134 -11.94052 -11.86167 -11.60852 -11.42416 -11.00510
-10.77214 -10.59466 -9.84067 -9.10378 -8.27727 -6.30453 1.34898 1.36648
1.45788 1.46512 1.85686 2.34150 2.93081 3.04396 3.11640 3.21160
3.37905 3.78246 3.86397 3.95305 4.01310 4.12585 4.18058 4.19098
4.27181 4.35042 4.42644 4.51154 4.59797 4.67148 4.69027 4.76442
4.80474 4.82675 4.85064 4.89570 4.93284 5.02211 5.08621 5.14177
5.21409 5.39159 5.51770 5.75462 5.90883 6.24756 6.33575 6.57806
6.75532 7.01278 7.33246 8.88033
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.025744 B = 0.004399 C = 0.004249
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1087.369488 B = 6362.844823 C = 6588.169866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.114 4.114
3 C 0.526 3.474
4 O -0.578 6.578
5 N -0.608 5.608
6 C 0.124 3.876
7 C 0.041 3.959
8 N -0.536 5.536
9 C 0.171 3.829
10 C -0.513 4.513
11 H 0.049 0.951
12 C 0.015 3.985
13 N -0.943 5.943
14 Si 0.939 3.061
15 H -0.266 1.266
16 H -0.283 1.283
17 H -0.258 1.258
18 C 0.048 3.952
19 C 0.109 3.891
20 C -0.138 4.138
21 C 0.041 3.959
22 O -0.402 6.402
23 C 0.044 3.956
24 H 0.069 0.931
25 H 0.100 0.900
26 H 0.074 0.926
27 H 0.083 0.917
28 H 0.088 0.912
29 H 0.092 0.908
30 H 0.020 0.980
31 H 0.030 0.970
32 H -0.017 1.017
33 H 0.267 0.733
34 H 0.022 0.978
35 H 0.083 0.917
36 H 0.087 0.913
37 H 0.120 0.880
38 H 0.111 0.889
39 H 0.071 0.929
40 H 0.096 0.904
41 H 0.089 0.911
42 H 0.084 0.916
43 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.729 -10.215 -17.897 20.620
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.117 4.117
3 C 0.315 3.685
4 O -0.459 6.459
5 N -0.340 5.340
6 C 0.001 3.999
7 C -0.088 4.088
8 N -0.260 5.260
9 C 0.044 3.956
10 C -0.551 4.551
11 H 0.067 0.933
12 C -0.183 4.183
13 N -0.584 5.584
14 Si 0.763 3.237
15 H -0.191 1.191
16 H -0.208 1.208
17 H -0.182 1.182
18 C -0.081 4.081
19 C -0.013 4.013
20 C -0.176 4.176
21 C -0.035 4.035
22 O -0.322 6.322
23 C -0.032 4.032
24 H 0.088 0.912
25 H 0.119 0.881
26 H 0.093 0.907
27 H 0.101 0.899
28 H 0.107 0.893
29 H 0.111 0.889
30 H 0.039 0.961
31 H 0.048 0.952
32 H 0.001 0.999
33 H 0.076 0.924
34 H 0.041 0.959
35 H 0.102 0.898
36 H 0.105 0.895
37 H 0.137 0.863
38 H 0.130 0.870
39 H 0.090 0.910
40 H 0.114 0.886
41 H 0.107 0.893
42 H 0.102 0.898
43 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -0.637 -9.698 -18.154 20.592
hybrid contribution 1.330 0.135 0.871 1.596
sum 0.693 -9.562 -17.283 19.764
Atomic orbital electron populations
1.22110 0.88702 1.05293 1.03890 1.22198 0.99842 0.91144 0.98525
1.20828 0.78463 0.87878 0.81332 1.90611 1.43659 1.76317 1.35274
1.48222 1.49823 1.16546 1.19425 1.21654 0.98166 0.83670 0.96404
1.22505 0.93356 1.01666 0.91255 1.61824 1.39363 1.22011 1.02817
1.19956 0.93450 0.95329 0.86892 1.21195 0.96257 1.46803 0.90835
0.93312 1.25710 1.01203 0.95022 0.96388 1.70017 1.35531 1.51500
1.01327 0.85837 0.80633 0.79359 0.77822 1.19084 1.20845 1.18170
1.22410 0.98787 0.88491 0.98424 1.22355 0.93536 1.02204 0.83229
1.23042 1.01423 0.96676 0.96488 1.23656 1.00417 0.96652 0.82765
1.89151 1.36223 1.74077 1.32704 1.23988 0.88787 0.95499 0.94958
0.91178 0.88112 0.90690 0.89904 0.89333 0.88926 0.96130 0.95224
0.99912 0.92431 0.95941 0.89840 0.89463 0.86255 0.87021 0.90984
0.88597 0.89333 0.89761 0.87771
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.97 7.98 71.98 0.57 -1.40 16
2 C -0.11 -2.32 0.69 -51.91 -0.04 -2.35 16
3 C 0.53 14.92 6.51 87.66 0.57 15.50 16
4 O -0.58 -20.18 14.80 -3.02 -0.04 -20.22 16
5 N -0.61 -17.07 2.93 -817.95 -2.40 -19.47 16
6 C 0.12 3.61 6.58 86.35 0.57 4.18 16
7 C 0.04 1.35 5.62 86.39 0.49 1.84 16
8 N -0.54 -20.93 4.62 -899.83 -4.16 -25.09 16
9 C 0.17 7.92 3.79 85.56 0.32 8.24 16
10 C -0.51 -28.23 8.96 25.60 0.23 -28.00 16
11 H 0.05 2.94 7.37 -2.91 -0.02 2.92 16
12 C 0.01 0.83 5.47 84.66 0.46 1.29 16
13 N -0.94 -57.02 13.96 21.45 0.30 -56.72 16
14 Si 0.94 43.21 27.47 68.60 1.88 45.09 16
15 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
16 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16
17 H -0.26 -11.30 6.54 99.48 0.65 -10.65 16
18 C 0.05 1.65 5.26 86.38 0.45 2.10 16
19 C 0.11 2.82 4.17 86.34 0.36 3.18 16
20 C -0.14 -2.55 6.31 31.61 0.20 -2.36 16
21 C 0.04 0.72 7.63 72.49 0.55 1.28 16
22 O -0.40 -10.26 11.65 -148.98 -1.74 -12.00 16
23 C 0.04 0.94 5.36 72.48 0.39 1.33 16
24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
25 H 0.10 0.85 8.01 -2.39 -0.02 0.83 16
26 H 0.07 1.05 5.28 -2.39 -0.01 1.04 16
27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
28 H 0.09 2.61 7.10 -2.39 -0.02 2.59 16
29 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16
30 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16
31 H 0.03 1.36 7.40 -2.39 -0.02 1.34 16
32 H -0.02 -0.80 7.17 -2.38 -0.02 -0.82 16
33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16
34 H 0.02 0.79 7.26 -2.38 -0.02 0.78 16
35 H 0.08 3.24 6.67 -2.39 -0.02 3.23 16
36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
37 H 0.12 2.39 3.30 -2.39 -0.01 2.38 16
38 H 0.11 1.38 7.74 -2.39 -0.02 1.36 16
39 H 0.07 1.74 6.54 -2.39 -0.02 1.73 16
40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
42 H 0.08 2.10 4.75 -2.39 -0.01 2.09 16
43 H 0.10 1.56 7.78 -2.39 -0.02 1.54 16
Total: -1.00 -70.50 322.04 -0.07 -70.57
By element:
Atomic # 1 Polarization: 12.07 SS G_CDS: 0.95 Total: 13.01 kcal
Atomic # 6 Polarization: -0.32 SS G_CDS: 5.14 Total: 4.82 kcal
Atomic # 7 Polarization: -95.02 SS G_CDS: -6.25 Total: -101.27 kcal
Atomic # 8 Polarization: -30.44 SS G_CDS: -1.78 Total: -32.22 kcal
Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal
Total: -70.50 -0.07 -70.57 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602204269.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.376 kcal
(2) G-P(sol) polarization free energy of solvation -70.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.943 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds