Wall clock time and date at job start Tue Mar 31 2020 01:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.82461 * 2 1 4 4 O 1.21286 * 119.99511 * 254.37458 * 3 2 1 5 5 N 1.34774 * 120.00282 * 74.64479 * 3 2 1 6 6 C 1.47081 * 120.88279 * 183.13618 * 5 3 2 7 7 C 1.53701 * 108.27718 * 128.75661 * 6 5 3 8 8 N 1.46894 * 109.25455 * 54.08340 * 7 6 5 9 9 C 1.46898 * 110.99887 * 172.60874 * 8 7 6 10 10 C 1.50701 * 109.47227 * 294.30007 * 9 8 7 11 11 H 1.07999 * 119.99757 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00140 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00020 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99780 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47336 * 60.00500 * 14 12 10 16 16 H 1.48501 * 109.47166 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47576 * 299.99842 * 14 12 10 18 18 C 1.46896 * 111.27125 * 296.75601 * 8 7 6 19 19 C 1.47078 * 120.88012 * 3.41836 * 5 3 2 20 20 C 1.54381 * 109.90268 * 239.06152 * 2 1 3 21 21 C 1.55312 * 102.24788 * 219.08820 * 20 2 1 22 22 C 1.54946 * 100.94347 * 34.13572 * 21 20 2 23 23 O 1.43236 * 109.82761 * 120.88383 * 2 1 3 24 24 H 1.09004 * 109.47350 * 60.70107 * 1 2 3 25 25 H 1.09002 * 109.47684 * 180.70756 * 1 2 3 26 26 H 1.09002 * 109.46958 * 300.70626 * 1 2 3 27 27 H 1.08999 * 109.62980 * 248.52519 * 6 5 3 28 28 H 1.09009 * 109.62605 * 9.10904 * 6 5 3 29 29 H 1.08999 * 109.64378 * 294.08352 * 7 6 5 30 30 H 1.08998 * 109.41832 * 173.95170 * 7 6 5 31 31 H 1.08998 * 109.47273 * 54.30228 * 9 8 7 32 32 H 1.09003 * 109.47311 * 174.30114 * 9 8 7 33 33 H 0.97000 * 119.99841 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.49534 * 303.14644 * 18 8 7 35 35 H 1.09003 * 109.51532 * 183.07617 * 18 8 7 36 36 H 1.08999 * 109.63219 * 350.89802 * 19 5 3 37 37 H 1.09004 * 109.63027 * 111.47585 * 19 5 3 38 38 H 1.08993 * 110.85228 * 337.27540 * 20 2 1 39 39 H 1.08995 * 110.84525 * 100.90379 * 20 2 1 40 40 H 1.08996 * 111.12504 * 276.21356 * 21 20 2 41 41 H 1.09004 * 111.12090 * 152.05507 * 21 20 2 42 42 H 1.08994 * 110.30655 * 204.63450 * 22 21 20 43 43 H 1.08997 * 110.30628 * 82.46751 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4176 0.0000 4 8 2.5129 1.8921 -1.0116 5 7 1.9789 2.1564 1.1255 6 6 2.4086 3.5631 1.1299 7 6 1.2837 4.4088 1.7478 8 7 0.9351 3.8623 3.0660 9 6 -0.0112 4.7408 3.7665 10 6 0.6596 6.0532 4.0804 11 1 1.6862 6.2184 3.7882 12 6 -0.0374 7.0435 4.7395 13 7 -1.2876 6.8426 5.0948 14 14 0.7940 8.6705 5.1279 15 1 1.2288 9.3183 3.8643 16 1 -0.1625 9.5586 5.8362 17 1 1.9768 8.4282 5.9925 18 6 0.4023 2.4980 2.9534 19 6 1.4853 1.5757 2.3834 20 6 2.0555 -0.7463 -1.2451 21 6 3.2754 -1.5202 -0.6748 22 6 2.7764 -1.8426 0.7562 23 8 2.0158 -0.6916 1.1564 24 1 -0.3634 0.5029 -0.8962 25 1 -0.3634 -1.0276 0.0127 26 1 -0.3633 0.5248 0.8836 27 1 3.3169 3.6666 1.7234 28 1 2.5962 3.8918 0.1076 29 1 0.4075 4.3827 1.0999 30 1 1.6238 5.4383 1.8592 31 1 -0.8794 4.9191 3.1321 32 1 -0.3305 4.2650 4.6939 33 1 -1.7778 7.5392 5.5589 34 1 -0.4616 2.4986 2.2888 35 1 0.1028 2.1415 3.9390 36 1 1.0623 0.5898 2.1904 37 1 2.3066 1.4919 3.0951 38 1 1.3043 -1.4357 -1.6300 39 1 2.3687 -0.0422 -2.0158 40 1 4.1636 -0.8890 -0.6482 41 1 3.4611 -2.4329 -1.2411 42 1 3.6223 -1.9894 1.4277 43 1 2.1428 -2.7295 0.7450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:23 Heat of formation + Delta-G solvation = -67.022561 kcal Electronic energy + Delta-G solvation = -23576.447162 eV Core-core repulsion = 20235.873636 eV Total energy + Delta-G solvation = -3340.573526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90870 -38.73565 -37.36459 -34.44811 -32.55020 -32.47272 -31.93379 -30.45671 -28.23818 -26.41421 -25.55233 -23.68094 -22.71457 -22.06097 -21.62940 -20.19527 -18.74359 -17.55659 -16.59115 -16.24728 -15.98275 -15.19729 -14.95624 -14.74994 -14.58705 -14.27647 -13.85905 -13.68925 -13.61716 -13.50463 -12.80732 -12.62190 -12.46285 -12.26817 -12.05800 -11.75682 -11.54533 -11.33697 -11.22088 -11.06524 -10.95421 -10.81402 -10.70734 -10.55161 -10.51646 -10.36194 -9.83782 -9.35001 -9.20167 -8.47629 -8.37621 -7.29311 -6.04744 -4.06508 2.61524 3.15652 3.33054 3.37073 3.39961 3.45528 4.25923 4.40555 4.44107 4.52915 4.69030 4.85242 4.96551 5.04765 5.30767 5.33383 5.38154 5.39904 5.44936 5.48768 5.56172 5.57530 5.70523 5.73007 5.78841 5.87966 5.89787 5.91924 6.00761 6.20426 6.30300 6.47836 6.55651 6.66654 6.79155 7.24560 7.29930 7.60668 7.76649 8.03688 8.14411 8.25838 8.50172 9.00542 9.57953 11.06087 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037619 B = 0.003818 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.123387 B = 7332.806988 C = 7576.281739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 C 0.516 3.484 4 O -0.549 6.549 5 N -0.592 5.592 6 C 0.112 3.888 7 C 0.053 3.947 8 N -0.535 5.535 9 C 0.194 3.806 10 C -0.510 4.510 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.038 3.962 19 C 0.112 3.888 20 C -0.139 4.139 21 C -0.155 4.155 22 C 0.045 3.955 23 O -0.360 6.360 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.024 0.976 30 H 0.096 0.904 31 H -0.009 1.009 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.024 0.976 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -17.902 -10.022 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 C 0.302 3.698 4 O -0.428 6.428 5 N -0.324 5.324 6 C -0.010 4.010 7 C -0.077 4.077 8 N -0.260 5.260 9 C 0.069 3.931 10 C -0.548 4.548 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.092 4.092 19 C -0.010 4.010 20 C -0.177 4.177 21 C -0.193 4.193 22 C -0.031 4.031 23 O -0.280 6.280 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.042 0.958 30 H 0.115 0.885 31 H 0.008 0.992 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.835 -17.503 -9.946 20.960 hybrid contribution -0.454 0.902 -0.209 1.031 sum 5.381 -16.602 -10.155 20.191 Atomic orbital electron populations 1.22194 0.92040 1.03439 1.03708 1.22191 0.95599 0.90037 0.87234 1.20600 0.78489 0.87603 0.83076 1.90647 1.46328 1.72996 1.32872 1.48163 1.62319 1.12253 1.09665 1.21992 0.98007 0.79371 1.01641 1.22410 0.95984 0.99429 0.89831 1.62077 1.45332 1.01217 1.17414 1.19721 0.89210 0.91211 0.92966 1.21113 0.98728 0.97968 1.37021 0.91855 1.24985 0.94856 0.98875 0.95815 1.69946 1.09304 1.34207 1.40342 0.86552 0.79148 0.83123 0.78544 1.20247 1.21372 1.20131 1.22468 0.94878 0.91542 1.00271 1.22142 0.97629 0.96760 0.84499 1.23113 0.97591 0.99494 0.97472 1.23256 0.98852 1.01019 0.96169 1.23470 0.95150 0.88937 0.95508 1.88547 1.70625 1.40228 1.28596 0.90908 0.90900 0.90841 0.90889 0.89563 0.95800 0.88547 0.99155 0.95034 0.92838 0.95734 0.90103 0.88032 0.90834 0.89885 0.87898 0.90281 0.89741 0.89519 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.46 37.16 0.31 -1.36 16 2 C 0.09 1.11 0.78 -91.05 -0.07 1.04 16 3 C 0.52 8.10 6.73 -10.99 -0.07 8.02 16 4 O -0.55 -9.95 14.86 5.55 0.08 -9.87 16 5 N -0.59 -9.59 3.00 -172.17 -0.52 -10.11 16 6 C 0.11 1.92 6.62 -3.36 -0.02 1.90 16 7 C 0.05 1.04 5.47 -3.46 -0.02 1.02 16 8 N -0.54 -11.38 4.62 -235.47 -1.09 -12.46 16 9 C 0.19 4.98 4.72 -4.98 -0.02 4.96 16 10 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 11 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 14 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 19 C 0.11 1.70 5.31 -3.60 -0.02 1.68 16 20 C -0.14 -1.40 6.01 -24.78 -0.15 -1.54 16 21 C -0.16 -1.33 7.16 -24.48 -0.18 -1.50 16 22 C 0.05 0.39 7.78 38.18 0.30 0.69 16 23 O -0.36 -4.22 7.73 -35.23 -0.27 -4.49 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.86 6.53 -51.93 -0.34 0.52 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.09 1.47 7.08 -51.92 -0.37 1.10 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 2.01 6.67 -51.93 -0.35 1.67 16 31 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 32 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 36 H 0.10 1.37 3.76 -51.93 -0.20 1.17 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 39 H 0.10 1.21 6.68 -51.93 -0.35 0.86 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -31.35 332.40 -8.41 -39.76 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.99 Total: -1.16 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -0.35 Total: 2.63 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.87 Total: -48.36 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.19 Total: -14.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.35 -8.41 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.265 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds