Wall clock time and date at job start Tue Mar 31 2020 02:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 120.00218 * 2 1 4 4 C 1.52999 * 109.47218 * 240.00544 * 3 2 1 5 5 O 1.42903 * 109.46442 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47316 * 120.00113 * 3 2 1 7 7 C 1.50701 * 109.46986 * 180.02562 * 6 3 2 8 8 O 1.21276 * 119.99872 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99733 * 180.02562 * 7 6 3 10 10 C 1.47081 * 120.88464 * 359.71175 * 9 7 6 11 11 C 1.53699 * 108.27571 * 128.75824 * 10 9 7 12 12 N 1.46895 * 109.25686 * 54.08650 * 11 10 9 13 13 C 1.46899 * 111.00162 * 172.60803 * 12 11 10 14 14 C 1.50706 * 109.46908 * 294.30028 * 13 12 11 15 15 H 1.07999 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99962 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99791 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00227 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47258 * 89.99715 * 18 16 14 20 20 H 1.48495 * 109.47259 * 209.99993 * 18 16 14 21 21 H 1.48507 * 109.46824 * 330.00113 * 18 16 14 22 22 C 1.46898 * 111.26956 * 296.75898 * 12 11 10 23 23 C 1.47084 * 120.88153 * 179.97438 * 9 7 6 24 24 H 1.07997 * 120.00143 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00089 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00596 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46848 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.46819 * 299.99633 * 4 3 2 29 29 H 1.08997 * 109.47286 * 59.99747 * 4 3 2 30 30 H 0.96700 * 114.00311 * 60.00230 * 5 3 2 31 31 H 1.08999 * 109.47164 * 300.00418 * 6 3 2 32 32 H 1.08997 * 109.47124 * 60.00119 * 6 3 2 33 33 H 1.08994 * 109.63253 * 248.53068 * 10 9 7 34 34 H 1.09004 * 109.62675 * 9.11038 * 10 9 7 35 35 H 1.09005 * 109.65060 * 294.08147 * 11 10 9 36 36 H 1.08997 * 109.42110 * 173.95123 * 11 10 9 37 37 H 1.08995 * 109.46985 * 54.30140 * 13 12 11 38 38 H 1.08998 * 109.46907 * 174.30445 * 13 12 11 39 39 H 0.97004 * 119.99771 * 180.02562 * 17 16 14 40 40 H 1.09008 * 109.49086 * 303.14313 * 22 12 11 41 41 H 1.09001 * 109.49452 * 183.06637 * 22 12 11 42 42 H 1.08996 * 109.62538 * 350.89546 * 23 9 7 43 43 H 1.09003 * 109.62719 * 111.47477 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1348 2.3912 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6963 2.6916 1.2495 8 8 3.5447 3.4792 0.3398 9 7 4.5389 2.9831 2.2600 10 6 4.7335 2.0444 3.3755 11 6 6.2429 1.8187 3.5577 12 7 6.9113 3.1171 3.7157 13 6 8.3269 2.9413 4.0667 14 6 8.4313 2.3078 5.4301 15 1 7.5357 2.0609 5.9809 16 6 9.6702 2.0433 5.9743 17 7 10.7608 2.3444 5.3038 18 14 9.7998 1.2574 7.6640 19 1 9.8221 -0.2207 7.5221 20 1 11.0496 1.7100 8.3260 21 1 8.6305 1.6580 8.4872 22 6 6.7668 3.9413 2.5083 23 6 5.2841 4.2511 2.2796 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 3.4877 2.3304 -1.2495 28 1 3.6514 0.5578 -1.2493 29 1 2.3164 1.3285 -2.1392 30 1 0.5438 2.4030 0.7659 31 1 2.3166 1.3284 2.1392 32 1 3.6515 0.5577 1.2492 33 1 4.3106 2.4663 4.2871 34 1 4.2454 1.0971 3.1462 35 1 6.6451 1.3065 2.6836 36 1 6.4138 1.2111 4.4463 37 1 8.8068 2.2979 3.3293 38 1 8.8216 3.9125 4.0785 39 1 11.6325 2.1580 5.6865 40 1 7.1617 3.3995 1.6487 41 1 7.3178 4.8731 2.6358 42 1 5.1599 4.7635 1.3256 43 1 4.9131 4.8813 3.0879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:28 Heat of formation + Delta-G solvation = -52.139259 kcal Electronic energy + Delta-G solvation = -22885.514150 eV Core-core repulsion = 19545.586012 eV Total energy + Delta-G solvation = -3339.928138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33901 -38.53281 -37.15890 -34.39661 -33.19234 -32.48982 -31.64651 -30.62896 -28.73431 -27.60954 -25.39087 -23.45935 -22.91299 -21.87873 -20.53698 -19.83702 -18.63066 -17.31161 -16.78411 -16.41540 -15.87092 -15.56553 -15.16721 -14.77193 -14.56412 -14.43042 -14.01000 -13.70868 -13.41140 -13.19748 -12.87296 -12.41818 -12.34097 -12.28311 -11.96770 -11.74631 -11.62243 -11.31516 -11.23401 -11.08295 -10.96472 -10.77322 -10.65379 -10.55129 -10.28800 -9.90619 -9.70236 -9.40623 -9.30347 -8.52539 -8.40267 -7.35688 -6.09376 -4.11673 1.92872 2.76476 3.13366 3.26579 3.33630 3.37090 4.08517 4.35793 4.40227 4.55929 4.74950 4.80916 4.88916 4.99247 5.24145 5.27439 5.35163 5.38673 5.48164 5.52295 5.55584 5.62820 5.75299 5.75998 5.85824 5.94296 6.02842 6.21648 6.26643 6.32887 6.42220 6.43199 6.46852 6.71161 7.19123 7.24663 7.54364 7.58329 7.71343 7.98474 8.09008 8.34898 8.44153 8.95509 9.53013 11.01418 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.003478 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.486526 B = 8048.193526 C = 8556.194237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.185 4.185 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.538 6.538 6 C -0.165 4.165 7 C 0.514 3.486 8 O -0.529 6.529 9 N -0.611 5.611 10 C 0.109 3.891 11 C 0.050 3.950 12 N -0.536 5.536 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.041 3.959 23 C 0.119 3.881 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.367 0.633 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.096 0.904 37 H -0.009 1.009 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.428 -4.328 -7.944 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.203 4.203 3 C 0.136 3.864 4 C -0.204 4.204 5 O -0.343 6.343 6 C -0.205 4.205 7 C 0.302 3.698 8 O -0.406 6.406 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.079 4.079 12 N -0.261 5.261 13 C 0.069 3.931 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.088 4.088 23 C -0.004 4.004 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.214 0.786 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.115 0.885 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.211 -3.514 -8.595 19.556 hybrid contribution 0.472 -1.245 0.984 1.656 sum -16.739 -4.759 -7.611 18.994 Atomic orbital electron populations 1.23854 0.96022 1.02329 0.99781 1.23643 0.96767 0.98886 1.01033 1.19864 0.87952 0.83930 0.94681 1.21936 0.98839 1.04454 0.95172 1.86724 1.50070 1.48997 1.48500 1.22409 1.00367 0.97366 1.00358 1.20349 0.79476 0.88293 0.81665 1.90645 1.64540 1.50239 1.35146 1.48273 1.43205 1.20303 1.22704 1.22097 0.97852 0.92265 0.89233 1.22407 0.91509 0.92659 1.01327 1.62069 1.18678 1.14105 1.31237 1.19727 0.80755 0.96848 0.95795 1.21133 0.92283 1.39763 1.01703 0.91808 1.25001 0.95716 0.95952 0.97919 1.69960 0.97687 1.47932 1.38086 0.86495 0.77607 0.79317 0.83981 1.20732 1.21236 1.19724 1.22400 0.94898 0.99015 0.92510 1.21714 0.91124 0.85102 1.02425 0.87751 0.88266 0.86606 0.88682 0.91883 0.92320 0.78599 0.88791 0.88031 0.90654 0.90358 0.95721 0.88536 0.99131 0.95016 0.92840 0.95599 0.90113 0.89428 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 13.93 29.02 0.40 -0.99 16 2 C -0.18 -1.57 8.77 -36.02 -0.32 -1.89 16 3 C 0.18 1.88 0.94 -91.77 -0.09 1.80 16 4 C -0.15 -1.74 8.51 37.16 0.32 -1.42 16 5 O -0.54 -6.39 10.84 -53.50 -0.58 -6.97 16 6 C -0.16 -1.71 3.30 -27.88 -0.09 -1.80 16 7 C 0.51 7.30 7.27 -10.99 -0.08 7.23 16 8 O -0.53 -9.10 12.41 -12.71 -0.16 -9.25 16 9 N -0.61 -8.91 3.00 -172.21 -0.52 -9.43 16 10 C 0.11 1.47 6.53 -3.36 -0.02 1.45 16 11 C 0.05 0.88 5.47 -3.46 -0.02 0.87 16 12 N -0.54 -10.95 4.62 -235.49 -1.09 -12.04 16 13 C 0.19 4.87 4.72 -4.97 -0.02 4.84 16 14 C -0.51 -13.72 8.41 -34.44 -0.29 -14.01 16 15 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.04 0.73 5.62 -3.72 -0.02 0.71 16 23 C 0.12 1.85 6.59 -3.62 -0.02 1.82 16 24 H 0.10 0.78 6.41 -52.49 -0.34 0.44 16 25 H 0.10 0.62 8.06 -52.48 -0.42 0.20 16 26 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.09 1.39 5.51 -51.93 -0.29 1.11 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.37 3.07 8.05 45.56 0.37 3.43 16 31 H 0.09 0.80 7.99 -51.93 -0.41 0.38 16 32 H 0.10 0.93 7.67 -51.93 -0.40 0.53 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.82 6.02 -51.93 -0.31 0.51 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.80 6.67 -51.93 -0.35 1.45 16 37 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 38 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 42 H 0.09 1.36 7.06 -51.93 -0.37 1.00 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -31.84 340.41 -8.08 -39.93 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.24 Total: 2.06 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.35 Total: 0.05 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.87 Total: -46.83 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.74 Total: -16.22 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.84 -8.08 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.211 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds