Wall clock time and date at job start Tue Mar 31 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99808 * 2 1 4 4 C 1.53002 * 109.46919 * 125.00304 * 3 2 1 5 5 O 1.42905 * 109.47079 * 179.97438 * 4 3 2 6 6 C 1.42899 * 113.99778 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47163 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99645 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00352 * 180.02562 * 7 6 5 10 10 C 1.47083 * 120.88068 * 359.71985 * 9 7 6 11 11 C 1.53696 * 108.27451 * 128.75374 * 10 9 7 12 12 N 1.46900 * 109.25519 * 54.08549 * 11 10 9 13 13 C 1.46901 * 110.99770 * 172.60333 * 12 11 10 14 14 C 1.50700 * 109.47368 * 294.30420 * 13 12 11 15 15 H 1.08004 * 119.99824 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99996 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00473 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99865 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47307 * 89.99705 * 18 16 14 20 20 H 1.48504 * 109.46999 * 209.99561 * 18 16 14 21 21 H 1.48492 * 109.47159 * 329.99574 * 18 16 14 22 22 C 1.46891 * 111.26978 * 296.75546 * 12 11 10 23 23 C 1.47081 * 120.88156 * 180.02562 * 9 7 6 24 24 H 1.08002 * 119.99574 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99910 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99910 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47237 * 5.00592 * 3 2 1 28 28 H 1.09004 * 109.47662 * 245.00434 * 3 2 1 29 29 H 1.09004 * 109.46930 * 60.00101 * 4 3 2 30 30 H 1.09000 * 109.47312 * 300.00045 * 4 3 2 31 31 H 1.08997 * 109.47442 * 300.00036 * 6 5 4 32 32 H 1.08997 * 109.47171 * 60.00232 * 6 5 4 33 33 H 1.08996 * 109.63006 * 248.52418 * 10 9 7 34 34 H 1.09007 * 109.62462 * 9.10488 * 10 9 7 35 35 H 1.08999 * 109.64964 * 294.07742 * 11 10 9 36 36 H 1.09002 * 109.41493 * 173.95116 * 11 10 9 37 37 H 1.08998 * 109.47215 * 54.30323 * 13 12 11 38 38 H 1.09003 * 109.46749 * 174.30113 * 13 12 11 39 39 H 0.96998 * 120.00539 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.49053 * 303.14426 * 22 12 11 41 41 H 1.08996 * 109.49604 * 183.06856 * 22 12 11 42 42 H 1.08994 * 109.62895 * 350.89212 * 23 9 7 43 43 H 1.09000 * 109.62996 * 111.47654 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7500 2.5704 1.1813 6 6 4.6895 2.6990 2.2503 7 6 5.3815 4.0342 2.1529 8 8 5.0977 4.8003 1.2566 9 7 6.3158 4.3769 3.0618 10 6 6.6707 3.4653 4.1602 11 6 8.1992 3.3051 4.1788 12 7 8.8246 4.6326 4.2475 13 6 10.2761 4.5211 4.4438 14 6 10.5553 3.9147 5.7948 15 1 9.7363 3.6400 6.4431 16 6 11.8563 3.7116 6.2037 17 7 12.8536 4.0466 5.4146 18 14 12.2023 2.9606 7.8788 19 1 12.2732 1.4826 7.7535 20 1 13.4959 3.4762 8.3947 21 1 11.1132 3.3260 8.8196 22 6 8.5144 5.4302 3.0537 23 6 7.0028 5.6751 2.9855 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0897 28 1 2.6213 1.4027 -0.9314 29 1 3.7400 0.5065 1.0919 30 1 2.4773 1.2355 2.1130 31 1 4.1665 2.6300 3.2041 32 1 5.4285 1.9006 2.1826 33 1 6.3318 3.8841 5.1077 34 1 6.2015 2.4950 3.9968 35 1 8.5254 2.7958 3.2721 36 1 8.4916 2.7197 5.0505 37 1 10.7002 3.8862 3.6659 38 1 10.7271 5.5120 4.3900 39 1 13.7688 3.9033 5.7021 40 1 8.8363 4.8913 2.1626 41 1 9.0355 6.3859 3.1092 42 1 6.7535 6.1667 2.0452 43 1 6.6952 6.3020 3.8225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602211076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:43 Heat of formation + Delta-G solvation = -52.860149 kcal Electronic energy + Delta-G solvation = -21925.133132 eV Core-core repulsion = 18585.173734 eV Total energy + Delta-G solvation = -3339.959398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.07178 -38.26863 -37.27535 -35.26886 -34.43863 -32.49526 -31.13162 -30.04397 -28.58597 -27.29274 -25.26931 -23.41102 -23.16831 -22.07481 -20.71451 -20.14824 -18.72746 -17.38917 -16.76992 -16.54574 -16.35462 -15.65968 -15.52847 -14.90977 -14.76758 -14.45968 -14.12723 -14.02654 -13.73526 -13.56272 -13.27680 -12.90935 -12.48734 -12.33827 -11.94972 -11.78612 -11.50319 -11.41030 -11.33204 -11.11045 -11.00331 -10.79289 -10.66692 -10.57257 -9.93345 -9.93063 -9.74555 -9.58952 -9.31500 -8.55243 -8.46950 -7.37439 -6.09634 -4.12026 1.85469 2.65521 2.73567 3.26377 3.33478 3.36827 3.69240 4.35318 4.48688 4.61507 4.70640 4.74621 4.85579 4.92933 5.03180 5.05303 5.12047 5.21840 5.26512 5.34437 5.47163 5.48131 5.60062 5.61644 5.68648 5.72705 5.82405 5.99899 6.24086 6.25068 6.36534 6.39965 6.40571 6.59899 6.87253 7.17872 7.23911 7.48639 7.70220 7.97311 8.07809 8.24046 8.43120 8.95032 9.52644 11.01095 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.002843 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.692159 B = 9845.016333 C =10581.470478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.365 6.365 6 C 0.047 3.953 7 C 0.515 3.485 8 O -0.531 6.531 9 N -0.608 5.608 10 C 0.107 3.893 11 C 0.049 3.951 12 N -0.536 5.536 13 C 0.193 3.807 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.041 3.959 23 C 0.120 3.880 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.098 0.902 37 H -0.009 1.009 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.027 0.973 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.342 -6.781 -6.380 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.283 6.283 6 C -0.033 4.033 7 C 0.302 3.698 8 O -0.407 6.407 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.080 4.080 12 N -0.261 5.261 13 C 0.068 3.932 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.089 4.089 23 C -0.002 4.002 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.116 0.884 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.515 -5.970 -6.611 21.452 hybrid contribution 0.866 -1.166 0.494 1.535 sum -18.649 -7.137 -6.117 20.883 Atomic orbital electron populations 1.23912 0.95893 1.02062 1.00687 1.22817 0.96025 0.98017 1.00279 1.20641 0.97935 0.95876 0.98602 1.22493 0.94019 0.86191 0.98529 1.87984 1.54323 1.37374 1.48646 1.22234 0.92988 0.96317 0.91748 1.20150 0.79822 0.88079 0.81795 1.90694 1.63623 1.52589 1.33777 1.48178 1.38917 1.19274 1.27937 1.22151 0.97022 0.92561 0.89832 1.22417 0.91417 0.92459 1.01681 1.62075 1.15601 1.13548 1.34865 1.19736 0.79824 0.97113 0.96490 1.21125 0.91888 1.40571 1.01299 0.91797 1.25003 0.96199 0.95856 0.97564 1.69953 0.99041 1.47919 1.36701 0.86490 0.77744 0.79164 0.83967 1.20742 1.21243 1.19745 1.22422 0.94331 0.99429 0.92693 1.21773 0.91727 0.83920 1.02797 0.88302 0.88393 0.87124 0.90488 0.89898 0.92949 0.93002 0.90269 0.90192 0.90253 0.90458 0.95601 0.88369 0.99077 0.94954 0.92834 0.95471 0.89936 0.89327 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 14.32 29.01 0.42 -0.79 16 2 C -0.15 -1.07 9.52 -36.03 -0.34 -1.41 16 3 C -0.09 -0.79 6.03 -27.88 -0.17 -0.96 16 4 C 0.06 0.59 5.92 37.16 0.22 0.81 16 5 O -0.36 -4.77 9.88 -55.14 -0.54 -5.32 16 6 C 0.05 0.55 4.78 36.00 0.17 0.72 16 7 C 0.51 7.96 7.78 -10.99 -0.09 7.88 16 8 O -0.53 -10.23 15.95 -14.36 -0.23 -10.46 16 9 N -0.61 -9.08 3.00 -172.15 -0.52 -9.60 16 10 C 0.11 1.44 6.53 -3.36 -0.02 1.42 16 11 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 12 N -0.54 -10.87 4.62 -235.45 -1.09 -11.96 16 13 C 0.19 4.83 4.72 -4.98 -0.02 4.81 16 14 C -0.51 -13.64 8.41 -34.44 -0.29 -13.93 16 15 H 0.06 1.66 7.13 -52.48 -0.37 1.29 16 16 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 18 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.04 0.72 5.62 -3.68 -0.02 0.70 16 23 C 0.12 1.87 6.60 -3.58 -0.02 1.84 16 24 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 25 H 0.10 0.60 7.84 -52.48 -0.41 0.19 16 26 H 0.11 0.66 8.06 -52.48 -0.42 0.23 16 27 H 0.08 0.68 7.79 -51.93 -0.40 0.27 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.73 7.99 -51.93 -0.41 0.31 16 32 H 0.08 0.79 7.67 -51.93 -0.40 0.39 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.78 6.02 -51.93 -0.31 0.47 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.80 6.67 -51.93 -0.35 1.46 16 37 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 38 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 42 H 0.09 1.39 7.06 -51.93 -0.37 1.02 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -32.26 352.43 -8.86 -41.11 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -7.22 Total: -3.01 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.28 Total: 3.35 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.87 Total: -46.83 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.77 Total: -15.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.26 -8.86 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602211076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.747 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds