Wall clock time and date at job start Tue Mar 31 2020 02:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00619 * 2 1 4 4 C 1.52995 * 109.47685 * 124.99532 * 3 2 1 5 5 O 1.42899 * 109.47250 * 180.02562 * 4 3 2 6 6 C 1.42896 * 114.00180 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47400 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99403 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99899 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.07999 * 120.00221 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99444 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99722 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.46554 * 4.99389 * 3 2 1 28 28 H 1.09003 * 109.47043 * 245.00417 * 3 2 1 29 29 H 1.09003 * 109.46558 * 60.00445 * 4 3 2 30 30 H 1.08996 * 109.46962 * 300.00455 * 4 3 2 31 31 H 1.09003 * 109.46818 * 60.00127 * 6 5 4 32 32 H 1.09000 * 109.47256 * 300.00193 * 6 5 4 33 33 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 35 35 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 36 36 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 37 37 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 38 38 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 41 41 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 42 42 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 43 43 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 8 3.7492 2.5708 1.1819 6 6 4.6886 2.6997 2.2509 7 6 5.3799 4.0353 2.1541 8 8 5.0962 4.8012 1.2576 9 7 6.3139 4.3782 3.0633 10 6 6.9853 5.6769 2.9694 11 6 6.1293 6.7439 3.6560 12 6 6.8196 8.1056 3.5290 13 7 8.1876 7.9962 4.0536 14 6 8.6361 8.8587 5.0181 15 1 9.4030 8.5434 5.7101 16 6 8.1051 10.1381 5.1063 17 7 7.4333 10.6432 4.0933 18 14 8.3437 11.1432 6.6626 19 1 9.5932 11.9380 6.5520 20 1 7.1887 12.0591 6.8424 21 1 8.4389 10.2314 7.8309 22 6 9.0655 6.9440 3.5234 23 6 8.3520 5.5947 3.6534 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4025 -0.9314 29 1 3.7400 0.5065 1.0920 30 1 2.4773 1.2356 2.1129 31 1 5.4281 1.9017 2.1829 32 1 4.1656 2.6300 3.2047 33 1 6.5409 3.7654 3.7800 34 1 7.1195 5.9413 1.9205 35 1 6.0132 6.4918 4.7101 36 1 5.1488 6.7875 3.1818 37 1 6.2670 8.8503 4.1020 38 1 6.8528 8.4020 2.4807 39 1 7.0625 11.5374 4.1547 40 1 9.2820 7.1434 2.4738 41 1 9.9958 6.9240 4.0910 42 1 8.9513 4.8189 3.1767 43 1 8.2178 5.3542 4.7080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609330456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:45 Heat of formation + Delta-G solvation = -48.970741 kcal Electronic energy + Delta-G solvation = -21862.977517 eV Core-core repulsion = 18523.186777 eV Total energy + Delta-G solvation = -3339.790740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79238 -38.18135 -37.11764 -35.26734 -34.38193 -32.19931 -30.45177 -29.94061 -29.47634 -27.39732 -24.79862 -23.29036 -22.25481 -21.97994 -20.39127 -20.07774 -19.28555 -17.23101 -17.02212 -16.71180 -16.42699 -15.60344 -15.39867 -14.80698 -14.63536 -14.24765 -13.85814 -13.59321 -13.49934 -13.21321 -13.00079 -12.80553 -12.41276 -12.37855 -11.79558 -11.53473 -11.47211 -11.41372 -11.12035 -10.92645 -10.70865 -10.38688 -10.25161 -10.06017 -9.93805 -9.78478 -9.74979 -9.73106 -9.40929 -8.70940 -8.41465 -6.67272 -5.77563 -3.20796 1.85368 2.76981 2.86659 3.38044 3.45064 3.47010 3.88563 4.50092 4.58871 4.71146 4.74942 4.87507 4.92677 5.03212 5.04261 5.10196 5.31506 5.41802 5.45971 5.47847 5.61308 5.64006 5.71068 5.83076 6.08528 6.23761 6.24203 6.35124 6.36618 6.43671 6.60939 6.65784 6.76844 6.81951 6.93465 6.97126 7.38681 7.67922 7.72502 7.80301 8.41755 8.46253 9.21818 9.85203 10.42034 11.31010 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038523 B = 0.002634 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.660466 B =10627.532844 C =10972.321972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.363 6.363 6 C 0.045 3.955 7 C 0.509 3.491 8 O -0.519 6.519 9 N -0.724 5.724 10 C 0.152 3.848 11 C -0.147 4.147 12 C 0.173 3.827 13 N -0.593 5.593 14 C -0.255 4.255 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.148 3.852 23 C -0.138 4.138 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.395 0.605 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.021 0.979 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 -21.882 -3.175 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.281 6.281 6 C -0.035 4.035 7 C 0.293 3.707 8 O -0.393 6.393 9 N -0.377 5.377 10 C 0.049 3.951 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.178 4.178 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.228 0.772 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.199 -20.984 -3.998 22.881 hybrid contribution 0.184 -0.059 1.368 1.382 sum -8.015 -21.043 -2.630 22.671 Atomic orbital electron populations 1.23923 0.95912 1.02104 1.00548 1.22804 0.96020 0.97960 1.00418 1.20647 0.98001 0.95917 0.98584 1.22481 0.93995 0.86151 0.98552 1.88015 1.54337 1.37231 1.48519 1.22229 0.93048 0.96352 0.91858 1.20169 0.80204 0.87917 0.82418 1.90745 1.62575 1.52290 1.33703 1.46225 1.40786 1.20441 1.30209 1.21058 0.91901 0.81147 1.00969 1.22571 0.98504 0.98175 0.99460 1.20754 0.85080 0.91889 0.97591 1.44099 1.08284 1.34160 1.44988 1.19149 1.21186 0.91958 1.06122 0.91684 1.25075 1.01035 0.96182 0.97385 1.70035 1.39834 1.15928 1.28691 0.86308 0.77287 0.79933 0.83285 1.21388 1.21559 1.20521 1.20842 0.93249 0.86963 0.96871 1.22331 0.95045 1.00219 1.00199 0.88317 0.88328 0.87206 0.90386 0.89877 0.93097 0.93071 0.90528 0.90455 0.77224 0.90005 0.92684 0.92789 0.89266 0.96099 0.93557 0.96188 0.92305 0.92607 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 14.32 29.02 0.42 -0.80 16 2 C -0.15 -1.06 9.52 -36.02 -0.34 -1.40 16 3 C -0.09 -0.80 6.03 -27.88 -0.17 -0.97 16 4 C 0.06 0.58 5.92 37.16 0.22 0.80 16 5 O -0.36 -4.70 9.88 -55.14 -0.54 -5.25 16 6 C 0.05 0.49 6.42 36.01 0.23 0.72 16 7 C 0.51 7.74 7.87 -10.99 -0.09 7.66 16 8 O -0.52 -10.59 16.16 -14.35 -0.23 -10.82 16 9 N -0.72 -10.00 5.08 -53.75 -0.27 -10.28 16 10 C 0.15 2.66 2.41 -67.87 -0.16 2.50 16 11 C -0.15 -2.96 5.66 -26.60 -0.15 -3.11 16 12 C 0.17 4.26 5.30 -3.71 -0.02 4.24 16 13 N -0.59 -14.85 3.00 -172.32 -0.52 -15.37 16 14 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 15 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.49 11.20 55.49 0.62 -25.87 16 18 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 23 C -0.14 -2.27 5.55 -26.61 -0.15 -2.41 16 24 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 25 H 0.10 0.63 7.84 -52.49 -0.41 0.22 16 26 H 0.11 0.61 8.06 -52.48 -0.42 0.19 16 27 H 0.08 0.72 7.79 -51.92 -0.40 0.31 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.39 4.02 8.60 -40.82 -0.35 3.67 16 34 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -33.44 353.90 -8.44 -41.88 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.33 Total: 0.60 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.47 Total: 3.11 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.17 Total: -51.51 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.78 Total: -16.07 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.44 -8.44 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.090 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds