Wall clock time and date at job start Tue Mar 31 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.54147 * 2 1 4 4 O 1.21277 * 119.99970 * 242.35357 * 3 2 1 5 5 N 1.34779 * 119.99776 * 62.07939 * 3 2 1 6 6 C 1.46965 * 120.59382 * 354.83510 * 5 3 2 7 7 C 1.53808 * 108.40203 * 124.75798 * 6 5 3 8 8 N 1.46962 * 108.58130 * 49.62904 * 7 6 5 9 9 C 1.36944 * 120.58897 * 124.66662 * 8 7 6 10 10 H 1.08003 * 119.99600 * 211.73786 * 9 8 7 11 11 C 1.38808 * 119.99756 * 31.74869 * 9 8 7 12 12 N 1.31614 * 120.00507 * 15.83823 * 11 9 8 13 13 Si 1.86799 * 119.99684 * 195.84155 * 11 9 8 14 14 H 1.48502 * 109.47396 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47377 * 119.99544 * 13 11 9 16 16 H 1.48507 * 109.47213 * 239.99763 * 13 11 9 17 17 C 1.46956 * 118.81583 * 304.65281 * 8 7 6 18 18 C 1.46961 * 120.59461 * 175.10524 * 5 3 2 19 19 C 1.53175 * 109.61856 * 120.22057 * 2 1 3 20 20 C 1.53089 * 109.16541 * 176.89368 * 19 2 1 21 21 O 1.42900 * 109.41446 * 302.38943 * 20 19 2 22 22 C 1.42907 * 114.09260 * 61.16194 * 21 20 19 23 23 C 1.53087 * 109.41378 * 298.83802 * 22 21 20 24 24 H 1.09008 * 109.47094 * 76.35797 * 1 2 3 25 25 H 1.09001 * 109.47088 * 196.35320 * 1 2 3 26 26 H 1.09000 * 109.47635 * 316.35616 * 1 2 3 27 27 H 1.09001 * 109.60569 * 244.53638 * 6 5 3 28 28 H 1.08999 * 109.61302 * 5.04799 * 6 5 3 29 29 H 1.09003 * 109.73757 * 289.84181 * 7 6 5 30 30 H 1.08999 * 109.67494 * 169.38449 * 7 6 5 31 31 H 0.96998 * 120.00456 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.61357 * 295.48042 * 17 8 7 33 33 H 1.08998 * 109.61423 * 174.96430 * 17 8 7 34 34 H 1.09005 * 109.60718 * 354.95634 * 18 5 3 35 35 H 1.09006 * 109.60479 * 115.28797 * 18 5 3 36 36 H 1.09001 * 109.52409 * 296.80566 * 19 2 1 37 37 H 1.09008 * 109.52047 * 56.98593 * 19 2 1 38 38 H 1.09002 * 109.47959 * 182.41114 * 20 19 2 39 39 H 1.08992 * 109.48026 * 62.37694 * 20 19 2 40 40 H 1.09003 * 109.47612 * 178.85537 * 22 21 20 41 41 H 1.08994 * 109.49392 * 58.83073 * 22 21 20 42 42 H 1.09008 * 109.52488 * 297.69917 * 23 22 21 43 43 H 1.09004 * 109.52482 * 177.51945 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4203 0.0000 4 8 2.6962 1.8287 -0.9304 5 7 1.7444 2.2381 1.0314 6 6 0.8458 1.7960 2.1070 7 6 1.5813 1.9519 3.4489 8 7 2.1537 3.3039 3.5149 9 6 1.8592 4.1349 4.5628 10 1 1.8174 5.2031 4.4095 11 6 1.6149 3.6041 5.8219 12 7 1.9626 2.3638 6.0922 13 14 0.7924 4.6503 7.1328 14 1 0.5037 5.9985 6.5812 15 1 -0.4769 4.0061 7.5560 16 1 1.6970 4.7783 8.3036 17 6 3.0478 3.7480 2.4365 18 6 2.3167 3.5901 1.0975 19 6 2.0443 -0.7262 1.2467 20 6 3.5731 -0.7882 1.1975 21 8 3.9833 -1.4476 -0.0021 22 6 3.5714 -0.7875 -1.2008 23 6 2.0425 -0.7255 -1.2478 24 1 -0.3634 0.2424 -0.9987 25 1 -0.3633 -0.9861 0.2893 26 1 -0.3634 0.7436 0.7092 27 1 -0.0547 2.4102 2.1069 28 1 0.5786 0.7505 1.9539 29 1 2.3795 1.2129 3.5192 30 1 0.8792 1.8113 4.2707 31 1 1.7915 1.9929 6.9719 32 1 3.9504 3.1369 2.4346 33 1 3.3118 4.7946 2.5878 34 1 3.0211 3.7297 0.2773 35 1 1.5187 4.3291 1.0241 36 1 1.7302 -0.1849 2.1392 37 1 1.6393 -1.7380 1.2720 38 1 3.9425 -1.3415 2.0609 39 1 3.9786 0.2234 1.2131 40 1 3.9396 -1.3404 -2.0651 41 1 3.9769 0.2241 -1.2167 42 1 1.6374 -1.7373 -1.2731 43 1 1.7271 -0.1837 -2.1395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610397159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:05 Heat of formation + Delta-G solvation = -40.996009 kcal Electronic energy + Delta-G solvation = -24602.228469 eV Core-core repulsion = 21262.783539 eV Total energy + Delta-G solvation = -3339.444930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98670 -38.21826 -36.79516 -35.04813 -33.79649 -31.48943 -30.83460 -30.13782 -28.41151 -27.09380 -24.30601 -23.73920 -22.93002 -22.80920 -21.60471 -19.85835 -18.51094 -16.77658 -16.24273 -16.00200 -15.81490 -15.30452 -15.23886 -14.78270 -14.47327 -14.04404 -13.90185 -13.54749 -13.47875 -13.28913 -12.79568 -12.62221 -12.27902 -12.00373 -11.85345 -11.77173 -11.52981 -11.39257 -11.06799 -10.88259 -10.78450 -10.55599 -10.39934 -10.32423 -10.25047 -10.04130 -9.87904 -9.34163 -9.06592 -8.64598 -8.27842 -6.72548 -5.92039 -3.39702 2.91910 3.29059 3.37199 3.38680 3.41376 4.04478 4.38988 4.53092 4.62068 4.83672 5.03673 5.10320 5.22186 5.29062 5.38673 5.48991 5.55481 5.63288 5.68206 5.74986 5.76275 5.81634 5.85911 5.92509 5.97200 6.00515 6.05825 6.10977 6.13769 6.19623 6.28459 6.32936 6.40012 6.73394 6.87295 7.12342 7.33393 7.36507 7.68512 7.87471 8.31988 8.51496 9.06432 9.67738 10.26700 11.15694 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027359 B = 0.005252 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.169292 B = 5330.016898 C = 5526.473101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C 0.520 3.480 4 O -0.557 6.557 5 N -0.592 5.592 6 C 0.057 3.943 7 C 0.159 3.841 8 N -0.589 5.589 9 C -0.258 4.258 10 H 0.066 0.934 11 C 0.008 3.992 12 N -0.900 5.900 13 Si 0.903 3.097 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.289 1.289 17 C 0.132 3.868 18 C 0.095 3.905 19 C -0.160 4.160 20 C 0.062 3.938 21 O -0.387 6.387 22 C 0.050 3.950 23 C -0.125 4.125 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.255 0.745 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 -6.347 -10.634 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.084 4.084 3 C 0.308 3.692 4 O -0.437 6.437 5 N -0.323 5.323 6 C -0.066 4.066 7 C 0.032 3.968 8 N -0.312 5.312 9 C -0.388 4.388 10 H 0.084 0.916 11 C -0.192 4.192 12 N -0.544 5.544 13 Si 0.733 3.267 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.216 1.216 17 C 0.005 3.995 18 C -0.029 4.029 19 C -0.197 4.197 20 C -0.015 4.015 21 O -0.306 6.306 22 C -0.026 4.026 23 C -0.163 4.163 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.244 -6.351 -10.928 12.837 hybrid contribution -0.692 0.744 0.868 1.336 sum -2.936 -5.606 -10.061 11.885 Atomic orbital electron populations 1.22203 0.92530 1.03399 1.03122 1.20792 0.97263 0.92675 0.97622 1.20419 0.79951 0.87098 0.81737 1.90579 1.41211 1.76692 1.35210 1.47989 1.46917 1.15055 1.22346 1.23333 0.93413 0.99933 0.89969 1.21242 0.96403 0.86707 0.92400 1.43928 1.51185 1.13418 1.22658 1.19209 1.42933 0.89951 0.86692 0.91615 1.25149 1.00348 0.96770 0.96908 1.70005 1.48214 1.14767 1.21409 0.86219 0.79001 0.79892 0.81613 1.20165 1.21440 1.21596 1.21304 0.92046 0.98872 0.87259 1.22219 0.98234 0.82370 1.00117 1.22705 0.97462 1.01654 0.97921 1.22538 0.93429 0.97929 0.87599 1.87869 1.77287 1.51525 1.13923 1.22776 0.93653 0.99068 0.87118 1.22001 0.97274 1.00135 0.96870 0.92095 0.91341 0.90441 0.91788 0.88790 0.95594 0.88758 0.93486 0.95958 0.91514 0.90141 0.92032 0.88125 0.90157 0.88527 0.93151 0.89492 0.90835 0.90875 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 8.09 37.16 0.30 -1.49 16 2 C -0.08 -1.10 0.50 -155.48 -0.08 -1.18 16 3 C 0.52 8.80 5.11 -10.98 -0.06 8.75 16 4 O -0.56 -10.71 13.36 5.56 0.07 -10.63 16 5 N -0.59 -10.35 2.94 -172.21 -0.51 -10.86 16 6 C 0.06 0.97 4.16 -3.37 -0.01 0.96 16 7 C 0.16 3.42 5.18 -3.37 -0.02 3.40 16 8 N -0.59 -13.88 2.95 -171.78 -0.51 -14.39 16 9 C -0.26 -6.71 9.54 -15.06 -0.14 -6.85 16 10 H 0.07 1.69 7.88 -52.48 -0.41 1.28 16 11 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 12 N -0.90 -24.64 11.36 55.49 0.63 -24.01 16 13 Si 0.90 20.67 29.58 -169.99 -5.03 15.64 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.13 2.71 6.67 -3.60 -0.02 2.69 16 18 C 0.09 1.72 6.58 -3.60 -0.02 1.69 16 19 C -0.16 -2.18 4.54 -26.59 -0.12 -2.30 16 20 C 0.06 0.93 6.62 37.20 0.25 1.18 16 21 O -0.39 -5.99 10.77 -35.23 -0.38 -6.36 16 22 C 0.05 0.71 6.55 37.20 0.24 0.96 16 23 C -0.12 -1.61 4.50 -26.60 -0.12 -1.73 16 24 H 0.06 0.67 8.04 -51.92 -0.42 0.25 16 25 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 26 H 0.08 0.94 4.90 -51.93 -0.25 0.68 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.36 2.80 -51.93 -0.15 1.22 16 29 H 0.03 0.59 7.40 -51.93 -0.38 0.20 16 30 H 0.09 2.25 6.21 -51.93 -0.32 1.93 16 31 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 34 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.46 3.83 -51.93 -0.20 1.26 16 37 H 0.08 0.96 8.11 -51.92 -0.42 0.54 16 38 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.05 0.87 7.38 -51.93 -0.38 0.48 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.21 5.90 -51.93 -0.31 0.90 16 42 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.08 0.99 7.99 -51.93 -0.42 0.58 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -29.33 315.79 -7.37 -36.71 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.53 Total: 2.96 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 0.11 Total: 6.19 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.38 Total: -49.26 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.31 Total: -17.00 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.33 -7.37 -36.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.288 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds