Wall clock time and date at job start Tue Mar 31 2020 02:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47189 * 2 1 4 4 C 1.52996 * 109.47042 * 120.00137 * 2 1 3 5 5 N 1.46497 * 109.47077 * 175.59987 * 4 2 1 6 6 C 1.46502 * 120.00108 * 275.71082 * 5 4 2 7 7 C 1.50699 * 109.47173 * 273.12311 * 6 5 4 8 8 H 1.07994 * 120.00297 * 355.22000 * 7 6 5 9 9 C 1.37876 * 119.99685 * 175.20772 * 7 6 5 10 10 N 1.31509 * 120.00300 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99912 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47515 * 180.02562 * 11 9 7 13 13 H 1.48504 * 109.47059 * 300.00368 * 11 9 7 14 14 H 1.48500 * 109.47097 * 59.99792 * 11 9 7 15 15 C 1.34776 * 120.00050 * 95.71367 * 5 4 2 16 16 O 1.21286 * 120.00338 * 185.00710 * 15 5 4 17 17 C 1.50705 * 120.00112 * 5.00361 * 15 5 4 18 18 H 1.08998 * 110.85185 * 332.18391 * 17 15 5 19 19 C 1.54625 * 110.96622 * 95.97058 * 17 15 5 20 20 C 1.51376 * 104.15055 * 93.33932 * 19 17 15 21 21 O 1.21280 * 124.93892 * 196.29202 * 20 19 17 22 22 N 1.34424 * 110.12476 * 16.25046 * 20 19 17 23 23 C 1.46495 * 124.35453 * 180.42657 * 22 20 19 24 24 C 1.46764 * 111.29827 * 0.40897 * 22 20 19 25 25 H 1.08999 * 109.47047 * 299.99920 * 1 2 3 26 26 H 1.08996 * 109.46777 * 59.99675 * 1 2 3 27 27 H 1.08998 * 109.46950 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47047 * 240.00080 * 2 1 3 29 29 H 1.08994 * 109.47212 * 180.97889 * 3 2 1 30 30 H 1.08995 * 109.46871 * 300.98169 * 3 2 1 31 31 H 1.09000 * 109.46869 * 60.98072 * 3 2 1 32 32 H 1.09006 * 109.47351 * 55.60168 * 4 2 1 33 33 H 1.09001 * 109.47351 * 295.60407 * 4 2 1 34 34 H 1.09004 * 109.46889 * 153.12890 * 6 5 4 35 35 H 1.08996 * 109.47336 * 33.13109 * 6 5 4 36 36 H 0.97007 * 120.00108 * 179.97438 * 10 9 7 37 37 H 1.09004 * 110.48473 * 212.00120 * 19 17 15 38 38 H 1.08998 * 110.49184 * 334.64396 * 19 17 15 39 39 H 1.08998 * 109.47206 * 269.97888 * 23 22 20 40 40 H 1.09006 * 109.46704 * 29.97787 * 23 22 20 41 41 H 1.09002 * 109.47388 * 149.97603 * 23 22 20 42 42 H 1.09003 * 110.24772 * 223.98188 * 24 22 20 43 43 H 1.08995 * 110.32119 * 102.02049 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5012 -0.8137 1.1974 6 6 4.1403 -1.9058 0.4592 7 6 4.2810 -3.1060 1.3596 8 1 4.0008 -3.0362 2.4002 9 6 4.7671 -4.2934 0.8547 10 7 5.1085 -4.3784 -0.4125 11 14 4.9407 -5.7814 1.9706 12 1 5.4822 -6.9239 1.1916 13 1 5.8679 -5.4589 3.0849 14 1 3.6107 -6.1440 2.5226 15 6 4.2574 0.1059 1.8289 16 8 5.4644 0.0829 1.7115 17 6 3.6034 1.1630 2.6810 18 1 2.5942 1.3759 2.3284 19 6 3.5929 0.7453 4.1697 20 6 4.8502 1.3681 4.7377 21 8 5.3637 1.0583 5.7918 22 7 5.3155 2.3139 3.9034 23 6 6.5230 3.1075 4.1444 24 6 4.4583 2.4490 2.7197 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0176 30 1 1.6625 1.9613 -0.8810 31 1 1.6912 1.9512 0.8987 32 1 1.6138 -1.7237 1.2895 33 1 1.7425 -0.1640 2.1375 34 1 5.1266 -1.5876 0.1213 35 1 3.5281 -2.1684 -0.4035 36 1 5.4509 -5.2137 -0.7676 37 1 2.7102 1.1424 4.6711 38 1 3.6290 -0.3402 4.2617 39 1 6.2599 4.0122 4.6924 40 1 7.2320 2.5215 4.7294 41 1 6.9757 3.3790 3.1907 42 1 5.0678 2.5240 1.8192 43 1 3.8173 3.3254 2.8147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701252355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:30 Heat of formation + Delta-G solvation = -73.861683 kcal Electronic energy + Delta-G solvation = -23697.260834 eV Core-core repulsion = 20356.390741 eV Total energy + Delta-G solvation = -3340.870093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71124 -38.85726 -36.49791 -35.92930 -33.72764 -32.82945 -32.19933 -28.18343 -27.52151 -27.00731 -26.57550 -25.58790 -23.67406 -21.69298 -20.28930 -19.49684 -18.36599 -17.33619 -16.53758 -16.42452 -15.60475 -15.44420 -15.05358 -14.76417 -14.43544 -14.18859 -13.73259 -13.48149 -13.41351 -13.00726 -12.81851 -12.53439 -12.39225 -12.21950 -12.14088 -11.92530 -11.71385 -11.53608 -11.40770 -11.25397 -10.99605 -10.95394 -10.78232 -10.55207 -10.39456 -10.16228 -9.66157 -9.65795 -8.97951 -8.59902 -8.45463 -7.69895 -6.07079 -4.12147 2.73626 3.11991 3.23088 3.31235 3.35769 3.40247 3.77619 4.36738 4.42482 4.57835 4.72616 4.94641 5.02395 5.07852 5.25593 5.28011 5.31536 5.32507 5.37379 5.50709 5.57525 5.60673 5.65833 5.75845 5.77523 5.78830 5.88200 5.93699 6.02040 6.15154 6.22969 6.39629 6.50814 6.57990 7.04490 7.19755 7.40225 7.48837 7.88983 8.20256 8.31297 8.35759 8.84545 9.01114 9.53365 11.00699 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.006626 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.396134 B = 4224.653386 C = 5644.695569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.149 4.149 4 C 0.112 3.888 5 N -0.590 5.590 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.286 1.286 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.514 3.486 16 O -0.536 6.536 17 C -0.138 4.138 18 H 0.119 0.881 19 C -0.140 4.140 20 C 0.524 3.476 21 O -0.537 6.537 22 N -0.615 5.615 23 C 0.100 3.900 24 C 0.124 3.876 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.150 15.249 2.368 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.206 4.206 4 C -0.012 4.012 5 N -0.320 5.320 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.211 1.211 13 H -0.201 1.201 14 H -0.202 1.202 15 C 0.300 3.700 16 O -0.413 6.413 17 C -0.159 4.159 18 H 0.137 0.863 19 C -0.181 4.181 20 C 0.312 3.688 21 O -0.414 6.414 22 N -0.349 5.349 23 C -0.041 4.041 24 C 0.000 4.000 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.067 14.960 2.709 17.211 hybrid contribution 0.043 -0.962 0.381 1.035 sum -8.024 13.998 3.089 16.428 Atomic orbital electron populations 1.21759 0.94948 1.01935 1.01386 1.21565 0.95465 0.96493 1.00218 1.21958 1.01514 0.96039 1.01085 1.21595 0.81535 1.01507 0.96552 1.48176 1.05446 1.27276 1.51143 1.19281 0.94137 0.82604 0.91287 1.21394 1.43682 0.95397 0.96339 0.92520 1.24914 0.95122 0.98784 0.95113 1.69917 1.43532 1.26944 1.12905 0.86589 0.78533 0.81853 0.80672 1.21146 1.20133 1.20177 1.19875 0.87337 0.82296 0.80524 1.90696 1.14096 1.73897 1.62631 1.22649 1.01873 0.95565 0.95852 0.86290 1.22270 0.97831 1.04105 0.93876 1.20754 0.85684 0.78858 0.83494 1.90695 1.63424 1.64179 1.23075 1.47970 1.26491 1.38335 1.22109 1.21483 0.86124 0.94695 1.01843 1.21915 0.92791 0.96037 0.89221 0.92866 0.92806 0.92395 0.90325 0.92466 0.92839 0.92866 0.89879 0.91388 0.93938 0.94691 0.92637 0.87159 0.87339 0.92919 0.90818 0.91019 0.89557 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.19 37.16 0.34 -1.06 16 2 C -0.12 -1.47 3.13 -90.62 -0.28 -1.75 16 3 C -0.15 -1.62 7.83 37.16 0.29 -1.33 16 4 C 0.11 1.66 4.89 -4.05 -0.02 1.64 16 5 N -0.59 -11.58 2.23 -175.06 -0.39 -11.97 16 6 C 0.25 6.20 5.25 -5.19 -0.03 6.18 16 7 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 11 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.51 9.87 5.31 -10.98 -0.06 9.81 16 16 O -0.54 -12.85 15.68 5.55 0.09 -12.77 16 17 C -0.14 -1.85 2.12 -90.14 -0.19 -2.04 16 18 H 0.12 1.22 3.75 -51.93 -0.19 1.02 16 19 C -0.14 -1.96 6.41 -26.70 -0.17 -2.13 16 20 C 0.52 8.95 8.02 -10.81 -0.09 8.86 16 21 O -0.54 -11.10 17.59 5.56 0.10 -11.00 16 22 N -0.61 -8.93 3.33 -180.25 -0.60 -9.53 16 23 C 0.10 1.21 10.96 59.84 0.66 1.87 16 24 C 0.12 1.50 6.54 -3.12 -0.02 1.48 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 29 H 0.06 0.74 6.58 -51.93 -0.34 0.40 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.46 6.52 -51.93 -0.34 0.12 16 32 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 33 H 0.07 0.81 5.94 -51.93 -0.31 0.50 16 34 H 0.04 1.22 7.27 -51.93 -0.38 0.85 16 35 H 0.04 0.90 8.01 -51.93 -0.42 0.48 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.11 1.74 7.90 -51.93 -0.41 1.33 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 1.12 7.59 -51.93 -0.39 0.73 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -35.24 346.39 -6.82 -42.06 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.96 Total: -1.51 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 0.01 Total: 8.16 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.26 Total: -47.02 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.18 Total: -23.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.24 -6.82 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701252355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.806 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds