Wall clock time and date at job start Tue Mar 31 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46748 * 2 1 4 4 C 1.52995 * 109.46950 * 119.99761 * 2 1 3 5 5 N 1.46503 * 109.46896 * 175.23944 * 4 2 1 6 6 C 1.46496 * 120.00167 * 276.16619 * 5 4 2 7 7 C 1.50701 * 109.47398 * 272.50516 * 6 5 4 8 8 H 1.07999 * 119.99590 * 355.27975 * 7 6 5 9 9 C 1.37874 * 119.99981 * 175.55960 * 7 6 5 10 10 N 1.31520 * 119.99817 * 359.72262 * 9 7 6 11 11 Si 1.86796 * 120.00099 * 179.72403 * 9 7 6 12 12 H 1.48504 * 109.47193 * 59.99509 * 11 9 7 13 13 H 1.48499 * 109.47552 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46967 * 300.00004 * 11 9 7 15 15 C 1.34782 * 119.99732 * 96.16497 * 5 4 2 16 16 O 1.21278 * 119.99936 * 186.30076 * 15 5 4 17 17 C 1.50694 * 120.00026 * 6.30974 * 15 5 4 18 18 H 1.08998 * 109.67589 * 332.71048 * 17 15 5 19 19 C 1.53343 * 109.67365 * 212.21194 * 17 15 5 20 20 C 1.52899 * 108.69215 * 172.78057 * 19 17 15 21 21 N 1.45757 * 110.51886 * 50.66940 * 20 19 17 22 22 C 1.33345 * 124.10944 * 340.98699 * 21 20 19 23 23 O 1.21282 * 118.25140 * 182.22657 * 22 21 20 24 24 C 1.50185 * 123.50913 * 2.19798 * 22 21 20 25 25 H 1.09005 * 109.47037 * 299.99907 * 1 2 3 26 26 H 1.08997 * 109.47178 * 59.99762 * 1 2 3 27 27 H 1.09009 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46976 * 240.00201 * 2 1 3 29 29 H 1.09002 * 109.47057 * 175.69649 * 3 2 1 30 30 H 1.09003 * 109.47331 * 295.69713 * 3 2 1 31 31 H 1.08997 * 109.47441 * 55.69632 * 3 2 1 32 32 H 1.09000 * 109.47317 * 55.24144 * 4 2 1 33 33 H 1.08997 * 109.47419 * 295.24122 * 4 2 1 34 34 H 1.09005 * 109.47189 * 152.50051 * 6 5 4 35 35 H 1.08997 * 109.46813 * 32.50975 * 6 5 4 36 36 H 0.97003 * 119.99620 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.60318 * 292.48631 * 19 17 15 38 38 H 1.09000 * 109.60274 * 52.98079 * 19 17 15 39 39 H 1.08993 * 109.25396 * 290.36522 * 20 19 17 40 40 H 1.08997 * 109.31371 * 171.00730 * 20 19 17 41 41 H 0.97000 * 117.94408 * 160.95932 * 21 20 19 42 42 H 1.08997 * 109.40188 * 222.29339 * 24 22 21 43 43 H 1.08994 * 109.39938 * 102.55047 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5005 -0.8212 1.1933 6 6 4.1320 -1.9125 0.4472 7 6 4.2821 -3.1137 1.3448 8 1 4.0119 -3.0452 2.3882 9 6 4.7698 -4.2984 0.8352 10 7 5.0988 -4.3816 -0.4355 11 14 4.9631 -5.7851 1.9494 12 1 3.6408 -6.1551 2.5150 13 1 5.5019 -6.9250 1.1649 14 1 5.8998 -5.4572 3.0542 15 6 4.2633 0.0907 1.8282 16 8 5.4679 0.0763 1.6890 17 6 3.6192 1.1282 2.7113 18 1 2.6020 1.3203 2.3699 19 6 4.4342 2.4262 2.6617 20 6 3.6692 3.5142 3.4160 21 7 3.2728 3.0386 4.7356 22 6 3.2116 1.7517 5.0794 23 8 2.8282 1.4734 6.1958 24 6 3.5915 0.6283 4.1578 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1273 1.4435 0.0771 30 1 1.7409 1.9336 -0.9260 31 1 1.6150 1.9781 0.8489 32 1 1.6087 -1.7213 1.2930 33 1 1.7480 -0.1605 2.1372 34 1 5.1146 -1.5938 0.0993 35 1 3.5106 -2.1742 -0.4092 36 1 5.4416 -5.2152 -0.7940 37 1 5.4036 2.2676 3.1342 38 1 4.5754 2.7299 1.6245 39 1 2.7792 3.7867 2.8489 40 1 4.3056 4.3922 3.5257 41 1 3.0393 3.6998 5.4058 42 1 2.8624 -0.1768 4.2488 43 1 4.5782 0.2542 4.4306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760462885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:24 Heat of formation + Delta-G solvation = -91.270877 kcal Electronic energy + Delta-G solvation = -23707.246443 eV Core-core repulsion = 20365.621431 eV Total energy + Delta-G solvation = -3341.625012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62785 -39.12847 -36.52943 -36.13943 -33.76802 -33.03725 -32.23125 -29.72714 -27.82329 -27.07971 -25.84175 -24.90933 -23.53230 -22.07962 -20.25685 -19.29928 -18.36330 -17.29876 -16.77999 -16.51458 -16.13501 -15.53538 -15.20274 -14.70298 -14.50046 -14.35420 -14.00735 -13.75186 -13.46028 -13.34883 -12.99706 -12.54351 -12.24517 -12.20044 -11.87506 -11.75684 -11.62354 -11.33995 -11.06961 -11.01709 -10.95775 -10.93180 -10.76257 -10.54020 -10.31895 -10.16247 -10.01692 -9.64953 -9.21103 -8.86917 -8.45468 -7.68480 -6.07007 -4.12134 2.60789 3.13951 3.29799 3.31167 3.35453 3.39723 3.80224 4.41535 4.52372 4.63028 4.66807 4.84955 4.99952 5.09421 5.14966 5.20802 5.23874 5.27460 5.34982 5.49241 5.60118 5.67454 5.70821 5.78128 5.80955 5.89622 5.95652 6.04765 6.11314 6.19229 6.24886 6.42052 6.52861 6.65558 7.05688 7.20937 7.41234 7.49986 7.89272 8.14526 8.20607 8.37544 8.85034 9.02137 9.53348 11.00775 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.005809 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.630827 B = 4818.767057 C = 5677.241319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.112 3.888 5 N -0.591 5.591 6 C 0.245 3.755 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.515 3.485 16 O -0.542 6.542 17 C -0.121 4.121 18 H 0.100 0.900 19 C -0.119 4.119 20 C 0.111 3.889 21 N -0.721 5.721 22 C 0.527 3.473 23 O -0.559 6.559 24 C -0.124 4.124 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.397 0.603 42 H 0.106 0.894 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 15.695 2.596 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.205 4.205 4 C -0.012 4.012 5 N -0.321 5.321 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.301 3.699 16 O -0.420 6.420 17 C -0.143 4.143 18 H 0.118 0.882 19 C -0.157 4.157 20 C -0.013 4.013 21 N -0.374 5.374 22 C 0.315 3.685 23 O -0.438 6.438 24 C -0.164 4.164 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.232 0.768 42 H 0.124 0.876 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.501 15.196 2.751 17.169 hybrid contribution -0.007 -0.673 0.641 0.929 sum -7.508 14.524 3.392 16.698 Atomic orbital electron populations 1.21763 0.94979 1.01938 1.01358 1.21552 0.95453 0.96509 1.00168 1.21933 1.01486 0.96023 1.01055 1.21595 0.81643 1.01405 0.96601 1.48204 1.05386 1.27614 1.50909 1.19283 0.94253 0.82651 0.91217 1.21405 1.43713 0.95506 0.96181 0.92470 1.24920 0.95159 0.98768 0.95115 1.69924 1.43721 1.27030 1.12619 0.86581 0.78531 0.81863 0.80605 1.20204 1.21174 1.20157 1.20001 0.87247 0.81942 0.80705 1.90668 1.14383 1.73396 1.63548 1.21649 1.01781 0.95686 0.95136 0.88204 1.21732 0.99392 0.92645 1.01938 1.21425 0.99295 0.97379 0.83194 1.45475 1.69356 1.07447 1.15090 1.20126 0.76397 0.83992 0.88027 1.90754 1.47453 1.83344 1.22225 1.21577 1.05852 0.96869 0.92068 0.92927 0.92796 0.92375 0.90311 0.92401 0.92908 0.93042 0.89924 0.91461 0.93895 0.94754 0.92648 0.89772 0.89341 0.91545 0.90272 0.76769 0.87564 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 2 C -0.12 -1.54 3.12 -90.62 -0.28 -1.82 16 3 C -0.15 -1.70 7.89 37.16 0.29 -1.41 16 4 C 0.11 1.73 4.88 -4.04 -0.02 1.71 16 5 N -0.59 -11.68 2.23 -175.07 -0.39 -12.07 16 6 C 0.24 6.17 5.26 -5.20 -0.03 6.14 16 7 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 11 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.52 9.79 5.24 -10.99 -0.06 9.73 16 16 O -0.54 -12.65 15.90 5.56 0.09 -12.56 16 17 C -0.12 -1.64 1.26 -91.56 -0.12 -1.76 16 18 H 0.10 1.18 3.91 -51.93 -0.20 0.97 16 19 C -0.12 -1.33 4.83 -26.61 -0.13 -1.46 16 20 C 0.11 0.88 7.17 -4.49 -0.03 0.85 16 21 N -0.72 -7.27 5.45 -61.40 -0.33 -7.60 16 22 C 0.53 7.30 7.71 -11.87 -0.09 7.21 16 23 O -0.56 -9.83 17.78 5.56 0.10 -9.73 16 24 C -0.12 -1.77 5.34 -28.09 -0.15 -1.92 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 29 H 0.06 0.78 6.19 -51.93 -0.32 0.46 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.50 7.01 -51.93 -0.36 0.13 16 32 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 33 H 0.07 0.88 5.79 -51.93 -0.30 0.58 16 34 H 0.04 1.23 7.28 -51.93 -0.38 0.85 16 35 H 0.03 0.89 7.97 -51.93 -0.41 0.47 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.40 3.39 8.80 -40.82 -0.36 3.03 16 42 H 0.11 1.54 8.10 -51.93 -0.42 1.12 16 43 H 0.11 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -33.76 342.70 -7.29 -41.05 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.94 Total: 1.65 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -0.69 Total: 2.85 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.01 Total: -45.03 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.19 Total: -22.29 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.76 -7.29 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760462885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.225 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds