Wall clock time and date at job start Tue Mar 31 2020 02:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47468 * 2 1 4 4 C 1.52993 * 109.47059 * 120.00312 * 2 1 3 5 5 N 1.46502 * 109.47311 * 174.99617 * 4 2 1 6 6 C 1.46506 * 119.99723 * 96.02411 * 5 4 2 7 7 C 1.50701 * 109.47025 * 85.56527 * 6 5 4 8 8 H 1.08006 * 119.99978 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99906 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00192 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99671 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46936 * 180.02562 * 11 9 7 13 13 H 1.48500 * 109.47323 * 299.99873 * 11 9 7 14 14 H 1.48496 * 109.47190 * 60.00469 * 11 9 7 15 15 C 1.34776 * 120.00207 * 276.02867 * 5 4 2 16 16 O 1.21276 * 119.99754 * 5.34062 * 15 5 4 17 17 C 1.50698 * 120.00141 * 185.33986 * 15 5 4 18 18 H 1.09009 * 109.66983 * 42.44710 * 17 15 5 19 19 C 1.53346 * 109.67530 * 162.94172 * 17 15 5 20 20 C 1.52924 * 108.67572 * 187.27027 * 19 17 15 21 21 N 1.45750 * 110.48397 * 309.24396 * 20 19 17 22 22 C 1.33359 * 124.11029 * 19.10187 * 21 20 19 23 23 O 1.21283 * 118.24760 * 177.73085 * 22 21 20 24 24 C 1.50180 * 123.50416 * 357.73139 * 22 21 20 25 25 H 1.08999 * 109.46751 * 300.00234 * 1 2 3 26 26 H 1.09005 * 109.46757 * 59.99744 * 1 2 3 27 27 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46731 * 240.00227 * 2 1 3 29 29 H 1.08995 * 109.47282 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47319 * 300.00643 * 3 2 1 31 31 H 1.09000 * 109.46584 * 60.00088 * 3 2 1 32 32 H 1.09002 * 109.47657 * 54.99965 * 4 2 1 33 33 H 1.08999 * 109.47442 * 294.99785 * 4 2 1 34 34 H 1.08998 * 109.47359 * 325.56417 * 6 5 4 35 35 H 1.08999 * 109.46887 * 205.56328 * 6 5 4 36 36 H 0.96999 * 120.00144 * 180.02562 * 10 9 7 37 37 H 1.09009 * 109.59969 * 307.02474 * 19 17 15 38 38 H 1.08995 * 109.60018 * 67.50781 * 19 17 15 39 39 H 1.08999 * 109.30079 * 69.55855 * 20 19 17 40 40 H 1.08999 * 109.29552 * 189.14139 * 20 19 17 41 41 H 0.97001 * 117.95028 * 199.07793 * 21 20 19 42 42 H 1.09009 * 109.41350 * 257.48715 * 24 22 21 43 43 H 1.09001 * 109.39142 * 137.74090 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8265 1.1905 6 6 4.3339 0.1646 1.8751 7 6 4.5189 -0.2427 3.3142 8 1 4.0608 -1.1489 3.6822 9 6 5.2730 0.5415 4.1611 10 7 5.8305 1.6452 3.7133 11 14 5.5017 0.0370 5.9451 12 1 6.3471 1.0416 6.6391 13 1 4.1769 -0.0395 6.6116 14 1 6.1625 -1.2915 6.0030 15 6 4.0761 -1.8350 0.5066 16 8 3.3906 -2.5986 -0.1398 17 6 5.5719 -2.0137 0.5452 18 1 5.9330 -1.8663 1.5631 19 6 5.9358 -3.4248 0.0677 20 6 7.4332 -3.6449 0.2866 21 7 8.1992 -2.5431 -0.2823 22 6 7.6865 -1.3464 -0.5710 23 8 8.4310 -0.4920 -1.0031 24 6 6.2364 -1.0002 -0.3898 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 3.8483 1.1395 1.8330 35 1 5.3063 0.2215 1.3858 36 1 6.3613 2.1968 4.3090 37 1 5.3705 -4.1612 0.6389 38 1 5.7027 -3.5235 -0.9925 39 1 7.6352 -3.7101 1.3557 40 1 7.7345 -4.5755 -0.1944 41 1 9.1412 -2.6893 -0.4618 42 1 5.7358 -1.0184 -1.3580 43 1 6.1536 -0.0021 0.0404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760462887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:26 Heat of formation + Delta-G solvation = -94.974235 kcal Electronic energy + Delta-G solvation = -23770.015740 eV Core-core repulsion = 20428.230139 eV Total energy + Delta-G solvation = -3341.785602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36694 -39.00967 -36.46236 -35.68580 -34.17818 -32.69275 -32.26323 -29.45220 -27.64852 -26.79651 -26.20233 -24.47925 -23.03976 -22.41957 -20.02891 -19.00322 -18.32473 -17.07455 -16.71017 -16.39923 -15.87207 -15.58481 -15.00795 -14.53856 -14.49342 -14.22249 -13.94959 -13.68395 -13.28148 -12.91301 -12.86462 -12.39032 -12.30665 -11.99104 -11.69561 -11.56498 -11.46920 -11.31682 -11.07754 -10.94141 -10.77483 -10.71558 -10.62413 -10.45707 -10.24868 -10.10021 -9.84249 -9.70410 -8.94153 -8.92993 -8.56574 -7.72905 -6.21198 -4.29367 2.89688 3.20539 3.24207 3.27120 3.30562 3.49266 3.83617 4.29351 4.77048 4.89455 4.97127 5.09345 5.12377 5.26332 5.31656 5.44933 5.47748 5.52583 5.58094 5.76430 5.90426 5.98667 6.00553 6.01960 6.04067 6.17523 6.18806 6.27148 6.36541 6.42377 6.46091 6.60839 6.75275 6.82430 6.93082 7.17794 7.48306 7.51515 7.71814 8.01462 8.30526 8.43086 8.73987 8.94476 9.38561 10.84988 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.009693 B = 0.008459 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.132570 B = 3309.107814 C = 5055.801941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.145 4.145 4 C 0.128 3.872 5 N -0.589 5.589 6 C 0.227 3.773 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.067 3.933 10 N -0.887 5.887 11 Si 0.895 3.105 12 H -0.286 1.286 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.521 3.479 16 O -0.572 6.572 17 C -0.110 4.110 18 H 0.117 0.883 19 C -0.114 4.114 20 C 0.111 3.889 21 N -0.722 5.722 22 C 0.530 3.470 23 O -0.560 6.560 24 C -0.127 4.127 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.267 0.733 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.396 0.604 42 H 0.097 0.903 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -6.980 -5.681 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.202 4.202 4 C 0.004 3.996 5 N -0.318 5.318 6 C 0.107 3.893 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.524 5.524 11 Si 0.722 3.278 12 H -0.211 1.211 13 H -0.201 1.201 14 H -0.201 1.201 15 C 0.309 3.691 16 O -0.453 6.453 17 C -0.131 4.131 18 H 0.135 0.865 19 C -0.152 4.152 20 C -0.013 4.013 21 N -0.374 5.374 22 C 0.317 3.683 23 O -0.439 6.439 24 C -0.167 4.167 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.116 0.884 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.298 -6.689 -6.102 9.341 hybrid contribution 0.528 -0.229 1.222 1.350 sum -1.769 -6.918 -4.880 8.649 Atomic orbital electron populations 1.21747 0.95409 1.01367 1.01371 1.21481 0.95213 0.96821 0.99575 1.21875 1.02027 0.95471 1.00866 1.21346 0.80742 1.00231 0.97270 1.48216 1.06499 1.27402 1.49657 1.19722 0.90450 0.87209 0.91898 1.21437 1.32670 1.09167 0.94847 0.92162 1.24935 0.95233 0.94727 0.98816 1.69898 1.32839 1.13444 1.36258 0.86606 0.78269 0.78372 0.84510 1.21147 1.20149 1.20144 1.20205 0.89558 0.80453 0.78875 1.90590 1.65137 1.46022 1.43556 1.21396 0.93621 0.95331 1.02791 0.86469 1.21682 0.93850 0.96583 1.03101 1.21434 0.92089 0.88926 0.98886 1.45456 1.13745 1.12987 1.65212 1.20090 0.90813 0.81261 0.76102 1.90736 1.60131 1.46434 1.46569 1.21740 0.91277 1.02096 1.01557 0.92754 0.93040 0.92896 0.91115 0.91895 0.93672 0.92695 0.91633 0.90265 0.94037 0.93759 0.92358 0.89429 0.90544 0.91322 0.90590 0.76943 0.88444 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 37.16 0.34 -1.47 16 2 C -0.11 -1.74 3.08 -90.62 -0.28 -2.02 16 3 C -0.15 -2.25 8.35 37.16 0.31 -1.94 16 4 C 0.13 2.26 4.76 -4.04 -0.02 2.24 16 5 N -0.59 -11.55 2.18 -175.06 -0.38 -11.93 16 6 C 0.23 5.05 3.99 -5.19 -0.02 5.03 16 7 C -0.54 -13.43 9.01 -34.44 -0.31 -13.74 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -23.90 13.29 55.43 0.74 -23.17 16 11 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.52 9.96 6.80 -10.99 -0.07 9.88 16 16 O -0.57 -11.73 15.70 5.56 0.09 -11.64 16 17 C -0.11 -1.85 1.74 -91.56 -0.16 -2.01 16 18 H 0.12 2.19 7.19 -51.92 -0.37 1.81 16 19 C -0.11 -1.54 4.64 -26.59 -0.12 -1.66 16 20 C 0.11 1.23 7.17 -4.49 -0.03 1.20 16 21 N -0.72 -9.58 5.45 -61.39 -0.33 -9.92 16 22 C 0.53 9.04 7.71 -11.87 -0.09 8.94 16 23 O -0.56 -11.56 17.78 5.56 0.10 -11.46 16 24 C -0.13 -2.14 5.09 -28.10 -0.14 -2.28 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.21 7.95 -51.93 -0.41 0.79 16 29 H 0.06 1.09 6.28 -51.93 -0.33 0.76 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.17 7.69 -51.93 -0.40 0.77 16 33 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 34 H 0.04 0.98 6.50 -51.93 -0.34 0.64 16 35 H 0.04 1.02 4.28 -51.93 -0.22 0.80 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.09 1.16 8.14 -51.92 -0.42 0.73 16 38 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.40 4.57 8.80 -40.82 -0.36 4.21 16 42 H 0.10 1.55 8.09 -51.92 -0.42 1.12 16 43 H 0.12 2.22 5.79 -51.93 -0.30 1.92 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -29.69 342.21 -7.27 -36.97 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.92 Total: 7.18 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -0.70 Total: 3.78 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.02 Total: -45.02 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.19 Total: -23.10 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.69 -7.27 -36.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760462887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.007 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds