Wall clock time and date at job start Tue Mar 31 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46733 * 2 1 4 4 C 1.52993 * 109.47190 * 120.00557 * 2 1 3 5 5 N 1.46503 * 109.47024 * 174.50821 * 4 2 1 6 6 C 1.46502 * 119.99664 * 270.27975 * 5 4 2 7 7 C 1.50702 * 109.47281 * 270.00044 * 6 5 4 8 8 H 1.08004 * 119.99774 * 0.02562 * 7 6 5 9 9 C 1.37870 * 119.99817 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00373 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99857 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47132 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47137 * 119.99626 * 11 9 7 14 14 H 1.48501 * 109.46759 * 239.99479 * 11 9 7 15 15 C 1.34780 * 120.00011 * 90.28513 * 5 4 2 16 16 O 1.21346 * 119.99448 * 185.67628 * 15 5 4 17 17 C 1.49448 * 120.00221 * 5.67435 * 15 5 4 18 18 O 1.21355 * 119.99860 * 354.30455 * 17 15 5 19 19 N 1.34770 * 120.00284 * 174.30556 * 17 15 5 20 20 C 1.46501 * 120.00422 * 179.72714 * 19 17 15 21 21 C 1.52998 * 109.47465 * 179.97438 * 20 19 17 22 22 C 1.52998 * 117.49871 * 243.62088 * 21 20 19 23 23 C 1.52998 * 117.49982 * 174.99850 * 21 20 19 24 24 H 1.08995 * 109.47047 * 299.99642 * 1 2 3 25 25 H 1.09001 * 109.46855 * 59.99946 * 1 2 3 26 26 H 1.09001 * 109.46764 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47068 * 240.00842 * 2 1 3 28 28 H 1.09011 * 109.46955 * 172.00647 * 3 2 1 29 29 H 1.08996 * 109.47961 * 292.00968 * 3 2 1 30 30 H 1.09003 * 109.46713 * 52.01338 * 3 2 1 31 31 H 1.08996 * 109.47357 * 54.50207 * 4 2 1 32 32 H 1.09006 * 109.46664 * 294.50288 * 4 2 1 33 33 H 1.08998 * 109.46812 * 30.00688 * 6 5 4 34 34 H 1.09001 * 109.46610 * 150.00297 * 6 5 4 35 35 H 0.96996 * 120.00297 * 180.02562 * 10 9 7 36 36 H 0.96999 * 120.00023 * 359.97438 * 19 17 15 37 37 H 1.09000 * 109.46677 * 299.99722 * 20 19 17 38 38 H 1.08998 * 109.47261 * 59.99449 * 20 19 17 39 39 H 1.08997 * 115.54650 * 29.32729 * 21 20 19 40 40 H 1.09003 * 117.50183 * 0.02562 * 22 21 20 41 41 H 1.08998 * 117.49843 * 145.02007 * 22 21 20 42 42 H 1.09002 * 117.49877 * 214.97985 * 23 21 20 43 43 H 1.08999 * 117.49568 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.4991 -0.8368 1.1848 6 6 4.1140 -2.0056 0.5507 7 6 4.3264 -3.0834 1.5823 8 1 4.0322 -2.9148 2.6078 9 6 4.8961 -4.2846 1.2171 10 7 5.2538 -4.4901 -0.0316 11 14 5.1587 -5.6208 2.4959 12 1 4.6744 -5.1444 3.8163 13 1 4.4051 -6.8382 2.1016 14 1 6.6057 -5.9420 2.5862 15 6 4.2756 0.1320 1.7091 16 8 5.4797 0.0884 1.5658 17 6 3.6535 1.2600 2.4669 18 8 2.4454 1.3603 2.5225 19 7 4.4342 2.1659 3.0884 20 6 3.8245 3.2750 3.8262 21 6 4.9237 4.1498 4.4323 22 6 4.9965 4.2368 5.9581 23 6 4.4926 5.4321 5.1469 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 3.1206 1.4459 0.1429 29 1 1.7980 1.9136 -0.9527 30 1 1.5646 1.9958 0.8100 31 1 1.5986 -1.7166 1.2996 32 1 1.7593 -0.1538 2.1364 33 1 3.4583 -2.3793 -0.2357 34 1 5.0738 -1.7217 0.1190 35 1 5.6543 -5.3353 -0.2886 36 1 5.3998 2.0855 3.0443 37 1 3.2172 3.8729 3.1467 38 1 3.1951 2.8789 4.6231 39 1 5.8638 4.1725 3.8812 40 1 4.2615 3.6705 6.5302 41 1 5.9846 4.3166 6.4111 42 1 5.1492 6.2984 5.0662 43 1 3.4257 5.6523 5.1855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788501985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:32 Heat of formation + Delta-G solvation = -41.155000 kcal Electronic energy + Delta-G solvation = -23051.975252 eV Core-core repulsion = 19712.523428 eV Total energy + Delta-G solvation = -3339.451824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45782 -38.31217 -37.41421 -36.40916 -34.04952 -33.64055 -32.23265 -28.17757 -27.40461 -26.81214 -25.61169 -23.96181 -22.67076 -21.70993 -21.19400 -19.88083 -19.28313 -17.09749 -16.68810 -16.53940 -15.89674 -15.59676 -15.14152 -14.77536 -14.50671 -14.09555 -14.07237 -13.88908 -13.32789 -13.09018 -12.89113 -12.47692 -12.20413 -11.84181 -11.79448 -11.67539 -11.47042 -11.33847 -11.04767 -10.85685 -10.80677 -10.71512 -10.53598 -10.52660 -10.39296 -10.18364 -9.94025 -9.59006 -9.01357 -8.58306 -8.46249 -7.68938 -6.07348 -4.12629 2.00670 2.84655 3.28867 3.36178 3.40829 3.50326 3.84276 4.14053 4.37947 4.43390 4.62039 4.69695 4.88286 5.00964 5.27302 5.33808 5.34721 5.36227 5.41459 5.54503 5.55027 5.60970 5.82552 5.88361 5.94070 6.03150 6.09583 6.21640 6.29177 6.34948 6.45559 6.53932 6.67663 6.87261 6.95202 7.35816 7.37569 7.47515 7.87616 8.11770 8.17796 8.33847 8.73675 8.94292 9.52422 11.00783 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.004936 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.452159 B = 5671.543860 C = 6989.795916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.139 4.139 4 C 0.083 3.917 5 N -0.557 5.557 6 C 0.242 3.758 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.899 3.101 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.496 3.504 16 O -0.532 6.532 17 C 0.505 3.495 18 O -0.513 6.513 19 N -0.707 5.707 20 C 0.151 3.849 21 C -0.171 4.171 22 C -0.176 4.176 23 C -0.171 4.171 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 16.773 6.528 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.196 4.196 4 C -0.040 4.040 5 N -0.287 5.287 6 C 0.123 3.877 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.727 3.273 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.277 3.723 16 O -0.410 6.410 17 C 0.288 3.712 18 O -0.390 6.390 19 N -0.361 5.361 20 C 0.027 3.973 21 C -0.189 4.189 22 C -0.213 4.213 23 C -0.208 4.208 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.490 16.644 6.356 18.643 hybrid contribution 0.704 -0.913 0.531 1.269 sum -4.786 15.731 6.887 17.828 Atomic orbital electron populations 1.21701 0.95040 1.01480 1.01329 1.21370 0.95487 0.96549 0.99130 1.22026 1.00239 0.96476 1.00844 1.22422 0.79763 1.01546 1.00264 1.48144 1.06592 1.20349 1.53613 1.19457 0.94644 0.80394 0.93196 1.21444 1.41049 0.98730 0.95542 0.92273 1.24924 0.95138 0.98381 0.95526 1.69940 1.41770 1.25062 1.16378 0.86423 0.77951 0.81404 0.81550 1.19754 1.20881 1.20839 1.19674 0.87125 0.83577 0.81900 1.90712 1.13973 1.76829 1.59518 1.20775 0.87032 0.83519 0.79860 1.90511 1.13854 1.73763 1.60918 1.45801 1.11298 1.26541 1.52419 1.20917 0.94046 0.86716 0.95577 1.22471 1.00867 1.00188 0.95408 1.23096 1.03110 1.01922 0.93206 1.22949 1.02093 0.91920 1.03840 0.92565 0.93171 0.92758 0.91529 0.94091 0.94202 0.91058 0.90853 0.86324 0.94394 0.93515 0.92690 0.75185 0.90824 0.91050 0.86936 0.88438 0.88565 0.88471 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 2 C -0.11 -1.73 3.12 -90.62 -0.28 -2.01 16 3 C -0.14 -2.19 7.69 37.16 0.29 -1.90 16 4 C 0.08 1.55 4.92 -4.04 -0.02 1.53 16 5 N -0.56 -12.35 2.35 -175.57 -0.41 -12.76 16 6 C 0.24 6.37 5.21 -5.19 -0.03 6.34 16 7 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 8 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 11 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.50 10.63 6.26 -11.58 -0.07 10.55 16 16 O -0.53 -12.82 16.04 5.50 0.09 -12.74 16 17 C 0.51 8.75 6.54 -11.59 -0.08 8.67 16 18 O -0.51 -8.85 9.97 5.49 0.05 -8.80 16 19 N -0.71 -9.78 5.55 -60.73 -0.34 -10.11 16 20 C 0.15 1.63 5.96 -4.04 -0.02 1.60 16 21 C -0.17 -1.46 5.85 -90.62 -0.53 -1.99 16 22 C -0.18 -1.36 10.18 -26.73 -0.27 -1.63 16 23 C -0.17 -1.20 10.25 -26.73 -0.27 -1.47 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.04 0.72 5.30 -51.92 -0.28 0.44 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.11 6.26 -51.93 -0.32 0.79 16 31 H 0.07 1.40 8.07 -51.93 -0.42 0.98 16 32 H 0.12 2.18 4.73 -53.83 -0.25 1.93 16 33 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.41 5.50 7.88 -40.82 -0.32 5.17 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 39 H 0.11 0.93 8.04 -51.93 -0.42 0.52 16 40 H 0.10 0.75 8.03 -51.93 -0.42 0.34 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -31.30 349.07 -7.99 -39.29 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.99 Total: 4.18 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.37 Total: 4.54 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.01 Total: -48.51 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.14 Total: -21.53 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.30 -7.99 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788501985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.864 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds