Wall clock time and date at job start Tue Mar 31 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00032 * 2 1 4 4 H 1.07999 * 120.00069 * 35.56698 * 3 2 1 5 5 C 1.38811 * 120.00162 * 215.56788 * 3 2 1 6 6 N 1.31622 * 119.99920 * 28.79958 * 5 3 2 7 7 Si 1.86801 * 120.00018 * 208.80497 * 5 3 2 8 8 H 1.48495 * 109.47145 * 59.99732 * 7 5 3 9 9 H 1.48504 * 109.46793 * 299.99560 * 7 5 3 10 10 H 1.48500 * 109.46884 * 179.97438 * 7 5 3 11 11 C 1.46499 * 119.99819 * 179.97438 * 2 1 3 12 12 N 1.46501 * 109.47336 * 281.95812 * 11 2 1 13 13 C 1.34601 * 134.66791 * 91.98799 * 12 11 2 14 14 O 1.21280 * 131.84554 * 0.02562 * 13 12 11 15 15 C 1.50569 * 96.30975 * 180.02562 * 13 12 11 16 16 C 1.53000 * 114.57092 * 246.82835 * 15 13 12 17 17 C 1.52994 * 114.22010 * 113.61698 * 15 13 12 18 18 C 1.46360 * 134.66562 * 272.35375 * 12 11 2 19 19 H 1.08997 * 113.05216 * 64.51894 * 18 12 11 20 20 C 1.53007 * 113.04891 * 295.36039 * 18 12 11 21 21 H 1.08998 * 110.27368 * 304.70671 * 20 18 12 22 22 C 1.54943 * 110.30873 * 66.79712 * 20 18 12 23 23 C 1.55411 * 100.89456 * 155.28947 * 22 20 18 24 24 C 1.54384 * 102.30798 * 325.98882 * 23 22 20 25 25 O 1.43246 * 107.58669 * 21.28722 * 24 23 22 26 26 H 1.08998 * 109.47358 * 94.89344 * 1 2 3 27 27 H 1.09003 * 109.47330 * 214.89472 * 1 2 3 28 28 H 1.09004 * 109.46907 * 334.89058 * 1 2 3 29 29 H 0.97001 * 119.99761 * 7.46895 * 6 5 3 30 30 H 1.08990 * 109.47321 * 41.95828 * 11 2 1 31 31 H 1.09005 * 109.46965 * 161.95779 * 11 2 1 32 32 H 1.09001 * 109.46724 * 152.78999 * 16 15 13 33 33 H 1.08996 * 109.46919 * 272.78611 * 16 15 13 34 34 H 1.08997 * 109.47213 * 32.78413 * 16 15 13 35 35 H 1.09001 * 109.47551 * 327.37693 * 17 15 13 36 36 H 1.08995 * 109.47262 * 87.38054 * 17 15 13 37 37 H 1.08998 * 109.47401 * 207.38007 * 17 15 13 38 38 H 1.09004 * 111.12468 * 273.28141 * 22 20 18 39 39 H 1.09004 * 111.12777 * 37.43656 * 22 20 18 40 40 H 1.09007 * 110.88553 * 207.75734 * 23 22 20 41 41 H 1.08993 * 110.93870 * 84.24606 * 23 22 20 42 42 H 1.09003 * 109.83156 * 261.77124 * 24 23 22 43 43 H 1.08997 * 109.90620 * 140.84279 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7608 2.0340 0.5440 5 6 3.3436 1.2981 -0.6992 6 7 3.5523 0.5587 -1.7679 7 14 4.6540 2.4983 -0.1234 8 1 5.0776 2.1448 1.2553 9 1 4.1015 3.8767 -0.1335 10 1 5.8249 2.4271 -1.0340 11 6 2.1975 -1.2687 0.0006 12 7 2.1938 -1.8342 1.3521 13 6 1.3985 -2.6934 2.0161 14 8 0.3962 -3.2900 1.6839 15 6 2.1692 -2.6664 3.3094 16 6 2.8554 -3.9858 3.6687 17 6 1.4099 -2.0377 4.4794 18 6 3.0497 -1.6890 2.5304 19 1 3.0382 -0.6809 2.9447 20 6 4.4702 -2.2119 2.3070 21 1 4.4428 -3.2491 1.9731 22 6 5.2101 -1.3319 1.2684 23 6 6.6900 -1.5857 1.6694 24 6 6.5927 -1.7476 3.2016 25 8 5.2393 -2.0972 3.5148 26 1 -0.3634 -0.0877 -1.0239 27 1 -0.3634 -0.8429 0.5879 28 1 -0.3633 0.9306 0.4361 29 1 2.8343 0.0163 -2.1302 30 1 1.7174 -1.9658 -0.6861 31 1 3.2254 -1.0950 -0.3178 32 1 3.7301 -3.7838 4.2869 33 1 2.1597 -4.6189 4.2195 34 1 3.1650 -4.4947 2.7560 35 1 0.7567 -1.2487 4.1068 36 1 0.8109 -2.8011 4.9760 37 1 2.1212 -1.6154 5.1892 38 1 5.0127 -1.6735 0.2523 39 1 4.9468 -0.2806 1.3854 40 1 7.3152 -0.7317 1.4085 41 1 7.0682 -2.4970 1.2063 42 1 6.8547 -0.8090 3.6900 43 1 7.2653 -2.5379 3.5347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811742620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:23 Heat of formation + Delta-G solvation = -30.922593 kcal Electronic energy + Delta-G solvation = -24611.703537 eV Core-core repulsion = 21272.695423 eV Total energy + Delta-G solvation = -3339.008114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14135 -38.75985 -36.13333 -35.78895 -32.66923 -31.81569 -31.17234 -29.60619 -27.44106 -27.24900 -25.57013 -24.10364 -22.63130 -21.41011 -20.89127 -20.57625 -17.71307 -17.22553 -16.68383 -16.29389 -15.92784 -15.58714 -15.05437 -14.26311 -14.20899 -14.02937 -13.72115 -13.66686 -13.19333 -12.89755 -12.60195 -12.46132 -12.28859 -12.07734 -11.87161 -11.58718 -11.49466 -11.32321 -11.17204 -11.11320 -10.99441 -10.87720 -10.63961 -10.38281 -10.21363 -10.18651 -9.71661 -9.40425 -9.07473 -8.57086 -8.21395 -7.16481 -6.31960 -3.57341 3.07068 3.29748 3.36083 3.46532 3.54271 4.11975 4.26904 4.40975 4.67002 4.80384 5.00665 5.06305 5.10254 5.20254 5.26631 5.39085 5.41757 5.53681 5.59243 5.80839 5.81462 5.87473 5.92189 5.93041 5.99444 6.05058 6.12025 6.19399 6.25230 6.27532 6.35924 6.48908 6.50801 6.57768 6.64922 6.70742 7.10690 7.28993 7.49522 7.91934 8.33748 8.83224 8.87752 9.55548 10.02551 10.89870 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.009552 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.122417 B = 2930.622101 C = 4377.587388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.587 5.587 3 C -0.361 4.361 4 H 0.053 0.947 5 C -0.007 4.007 6 N -0.896 5.896 7 Si 1.047 2.953 8 H -0.287 1.287 9 H -0.289 1.289 10 H -0.282 1.282 11 C 0.359 3.641 12 N -0.608 5.608 13 C 0.513 3.487 14 O -0.537 6.537 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.117 4.117 18 C 0.132 3.868 19 H 0.095 0.905 20 C 0.082 3.918 21 H 0.074 0.926 22 C -0.149 4.149 23 C -0.156 4.156 24 C 0.053 3.947 25 O -0.375 6.375 26 H 0.009 0.991 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.269 0.731 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.434 -5.619 9.817 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.309 5.309 3 C -0.490 4.490 4 H 0.071 0.929 5 C -0.211 4.211 6 N -0.533 5.533 7 Si 0.875 3.125 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.153 3.847 12 N -0.348 5.348 13 C 0.298 3.702 14 O -0.413 6.413 15 C -0.120 4.120 16 C -0.177 4.177 17 C -0.175 4.175 18 C 0.027 3.973 19 H 0.113 0.887 20 C 0.024 3.976 21 H 0.092 0.908 22 C -0.186 4.186 23 C -0.194 4.194 24 C -0.024 4.024 25 O -0.293 6.293 26 H 0.027 0.973 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.351 -5.278 9.230 12.385 hybrid contribution -1.502 -0.159 -0.073 1.513 sum 4.849 -5.437 9.157 11.702 Atomic orbital electron populations 1.21156 0.85133 0.98965 0.97526 1.44443 1.00799 1.02659 1.83044 1.19917 1.08462 0.90832 1.29838 0.92883 1.25889 1.00435 1.01502 0.93282 1.70815 1.36930 1.28810 1.16771 0.83837 0.76803 0.75871 0.75982 1.21406 1.21588 1.20704 1.21344 0.99804 0.84784 0.78746 1.52062 1.26011 1.43114 1.13642 1.22118 0.83108 0.78431 0.86518 1.90607 1.25227 1.48045 1.77464 1.22401 0.96430 0.97571 0.95619 1.21506 1.00634 0.93789 1.01758 1.21412 0.99643 1.00531 0.95924 1.22181 0.89880 0.99757 0.85499 0.88694 1.23135 0.90875 0.98830 0.84792 0.90827 1.23371 0.93177 1.02080 0.99977 1.23130 0.98106 1.02686 0.95435 1.23090 0.84095 0.99907 0.95284 1.88346 1.20472 1.90900 1.29614 0.97277 0.95161 0.94102 0.91999 0.92743 0.87229 0.90238 0.92024 0.92567 0.92239 0.91785 0.91188 0.89336 0.89236 0.90063 0.90847 0.91526 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.68 10.74 59.85 0.64 3.32 16 2 N -0.59 -14.50 2.87 -184.86 -0.53 -15.03 16 3 C -0.36 -9.55 9.34 -15.06 -0.14 -9.69 16 4 H 0.05 1.45 7.98 -52.49 -0.42 1.03 16 5 C -0.01 -0.17 4.62 -17.43 -0.08 -0.26 16 6 N -0.90 -24.32 12.28 55.49 0.68 -23.64 16 7 Si 1.05 23.21 29.42 -169.99 -5.00 18.21 16 8 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 9 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 C 0.36 8.18 6.25 -63.75 -0.40 7.78 16 12 N -0.61 -12.38 3.40 -196.03 -0.67 -13.04 16 13 C 0.51 10.35 8.20 -23.40 -0.19 10.16 16 14 O -0.54 -12.46 18.03 5.56 0.10 -12.36 16 15 C -0.12 -1.86 1.57 -155.79 -0.24 -2.10 16 16 C -0.12 -1.60 8.02 37.16 0.30 -1.31 16 17 C -0.12 -1.64 9.24 37.15 0.34 -1.30 16 18 C 0.13 2.33 3.60 -80.33 -0.29 2.04 16 19 H 0.10 1.79 7.99 -51.93 -0.42 1.38 16 20 C 0.08 1.29 2.54 -25.70 -0.07 1.23 16 21 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 22 C -0.15 -2.49 5.53 -24.43 -0.14 -2.62 16 23 C -0.16 -2.05 7.02 -24.73 -0.17 -2.22 16 24 C 0.05 0.66 7.80 37.88 0.30 0.95 16 25 O -0.37 -5.52 9.93 -35.23 -0.35 -5.87 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.03 0.68 8.11 -51.93 -0.42 0.26 16 28 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 29 H 0.27 7.52 7.61 -40.82 -0.31 7.21 16 30 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.11 2.59 3.70 -51.93 -0.19 2.39 16 32 H 0.08 1.00 6.90 -51.93 -0.36 0.64 16 33 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.06 0.77 6.99 -51.93 -0.36 0.41 16 35 H 0.06 0.91 8.03 -51.93 -0.42 0.49 16 36 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.60 6.92 -51.93 -0.36 1.24 16 39 H 0.09 1.74 7.45 -51.93 -0.39 1.35 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -29.22 341.15 -7.76 -36.98 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.99 Total: 3.64 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.14 Total: 5.98 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.52 Total: -51.72 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.25 Total: -18.23 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.00 Total: 18.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.22 -7.76 -36.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811742620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.057 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds