Wall clock time and date at job start Tue Mar 31 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00032 * 2 1 4 4 H 1.07999 * 120.00069 * 35.56698 * 3 2 1 5 5 C 1.38811 * 120.00162 * 215.56788 * 3 2 1 6 6 N 1.31622 * 119.99920 * 28.79958 * 5 3 2 7 7 Si 1.86801 * 120.00018 * 208.80497 * 5 3 2 8 8 H 1.48495 * 109.47145 * 59.99732 * 7 5 3 9 9 H 1.48504 * 109.46793 * 299.99560 * 7 5 3 10 10 H 1.48500 * 109.46884 * 179.97438 * 7 5 3 11 11 C 1.46499 * 119.99819 * 179.97438 * 2 1 3 12 12 N 1.46501 * 109.47336 * 281.95812 * 11 2 1 13 13 C 1.34601 * 134.66791 * 91.98799 * 12 11 2 14 14 O 1.21280 * 131.84554 * 0.02562 * 13 12 11 15 15 C 1.50569 * 96.30975 * 180.02562 * 13 12 11 16 16 C 1.53000 * 114.57092 * 246.82835 * 15 13 12 17 17 C 1.52994 * 114.22010 * 113.61698 * 15 13 12 18 18 C 1.46360 * 134.66562 * 272.35375 * 12 11 2 19 19 H 1.08997 * 113.05216 * 64.51894 * 18 12 11 20 20 C 1.53007 * 113.04891 * 295.36039 * 18 12 11 21 21 H 1.08998 * 110.27368 * 304.70671 * 20 18 12 22 22 C 1.54943 * 110.30873 * 66.79712 * 20 18 12 23 23 C 1.55411 * 100.89456 * 155.28947 * 22 20 18 24 24 C 1.54384 * 102.30798 * 325.98882 * 23 22 20 25 25 O 1.43246 * 107.58669 * 21.28722 * 24 23 22 26 26 H 1.08998 * 109.47358 * 94.89344 * 1 2 3 27 27 H 1.09003 * 109.47330 * 214.89472 * 1 2 3 28 28 H 1.09004 * 109.46907 * 334.89058 * 1 2 3 29 29 H 0.97001 * 119.99761 * 7.46895 * 6 5 3 30 30 H 1.08990 * 109.47321 * 41.95828 * 11 2 1 31 31 H 1.09005 * 109.46965 * 161.95779 * 11 2 1 32 32 H 1.09001 * 109.46724 * 152.78999 * 16 15 13 33 33 H 1.08996 * 109.46919 * 272.78611 * 16 15 13 34 34 H 1.08997 * 109.47213 * 32.78413 * 16 15 13 35 35 H 1.09001 * 109.47551 * 327.37693 * 17 15 13 36 36 H 1.08995 * 109.47262 * 87.38054 * 17 15 13 37 37 H 1.08998 * 109.47401 * 207.38007 * 17 15 13 38 38 H 1.09004 * 111.12468 * 273.28141 * 22 20 18 39 39 H 1.09004 * 111.12777 * 37.43656 * 22 20 18 40 40 H 1.09007 * 110.88553 * 207.75734 * 23 22 20 41 41 H 1.08993 * 110.93870 * 84.24606 * 23 22 20 42 42 H 1.09003 * 109.83156 * 261.77124 * 24 23 22 43 43 H 1.08997 * 109.90620 * 140.84279 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7608 2.0340 0.5440 5 6 3.3436 1.2981 -0.6992 6 7 3.5523 0.5587 -1.7679 7 14 4.6540 2.4983 -0.1234 8 1 5.0776 2.1448 1.2553 9 1 4.1015 3.8767 -0.1335 10 1 5.8249 2.4271 -1.0340 11 6 2.1975 -1.2687 0.0006 12 7 2.1938 -1.8342 1.3521 13 6 1.3985 -2.6934 2.0161 14 8 0.3962 -3.2900 1.6839 15 6 2.1692 -2.6664 3.3094 16 6 2.8554 -3.9858 3.6687 17 6 1.4099 -2.0377 4.4794 18 6 3.0497 -1.6890 2.5304 19 1 3.0382 -0.6809 2.9447 20 6 4.4702 -2.2119 2.3070 21 1 4.4428 -3.2491 1.9731 22 6 5.2101 -1.3319 1.2684 23 6 6.6900 -1.5857 1.6694 24 6 6.5927 -1.7476 3.2016 25 8 5.2393 -2.0972 3.5148 26 1 -0.3634 -0.0877 -1.0239 27 1 -0.3634 -0.8429 0.5879 28 1 -0.3633 0.9306 0.4361 29 1 2.8343 0.0163 -2.1302 30 1 1.7174 -1.9658 -0.6861 31 1 3.2254 -1.0950 -0.3178 32 1 3.7301 -3.7838 4.2869 33 1 2.1597 -4.6189 4.2195 34 1 3.1650 -4.4947 2.7560 35 1 0.7567 -1.2487 4.1068 36 1 0.8109 -2.8011 4.9760 37 1 2.1212 -1.6154 5.1892 38 1 5.0127 -1.6735 0.2523 39 1 4.9468 -0.2806 1.3854 40 1 7.3152 -0.7317 1.4085 41 1 7.0682 -2.4970 1.2063 42 1 6.8547 -0.8090 3.6900 43 1 7.2653 -2.5379 3.5347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811742620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:23 Heat of formation + Delta-G solvation = -48.442066 kcal Electronic energy + Delta-G solvation = -24612.463238 eV Core-core repulsion = 21272.695423 eV Total energy + Delta-G solvation = -3339.767815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.61730 -39.98752 -37.95963 -37.49532 -34.18601 -33.28708 -32.80064 -30.82179 -29.07389 -28.40749 -27.54518 -25.51944 -24.28166 -22.53467 -22.43187 -22.12575 -19.58225 -18.77671 -18.03126 -17.86796 -17.38423 -16.97237 -16.36241 -16.07152 -15.87627 -15.46181 -15.31471 -15.16045 -14.74552 -14.29293 -14.12482 -13.80493 -13.55223 -13.39587 -13.25377 -13.18056 -13.04628 -12.87059 -12.67301 -12.56466 -12.36605 -12.19509 -12.13001 -11.96775 -11.71614 -11.60502 -11.49858 -10.69091 -10.56455 -10.51666 -9.86077 -9.17136 -8.39621 -5.65697 1.44566 1.54586 1.56225 1.78693 1.94449 2.54885 2.73869 2.91103 3.10794 3.37879 3.49272 3.58672 3.76854 3.98234 4.00089 4.09345 4.16217 4.22057 4.30491 4.38671 4.46176 4.56659 4.68021 4.73751 4.78480 4.80236 4.80879 4.86881 4.88960 4.96232 5.02090 5.03239 5.07223 5.18301 5.25248 5.35834 5.57501 5.75020 5.89900 6.05098 6.23088 6.84918 7.20760 7.54316 8.01179 8.79217 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.009552 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.122417 B = 2930.622101 C = 4377.587388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.603 5.603 3 C -0.375 4.375 4 H 0.040 0.960 5 C -0.036 4.036 6 N -0.909 5.909 7 Si 1.089 2.911 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.370 3.630 12 N -0.618 5.618 13 C 0.501 3.499 14 O -0.574 6.574 15 C -0.094 4.094 16 C -0.115 4.115 17 C -0.116 4.116 18 C 0.131 3.869 19 H 0.080 0.920 20 C 0.094 3.906 21 H 0.083 0.917 22 C -0.154 4.154 23 C -0.149 4.149 24 C 0.050 3.950 25 O -0.378 6.378 26 H 0.009 0.991 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.254 0.746 30 H 0.041 0.959 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 -6.181 12.136 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.327 5.327 3 C -0.504 4.504 4 H 0.058 0.942 5 C -0.237 4.237 6 N -0.547 5.547 7 Si 0.912 3.088 8 H -0.194 1.194 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.163 3.837 12 N -0.357 5.357 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.098 4.098 16 C -0.172 4.172 17 C -0.174 4.174 18 C 0.026 3.974 19 H 0.098 0.902 20 C 0.036 3.964 21 H 0.100 0.900 22 C -0.191 4.191 23 C -0.187 4.187 24 C -0.026 4.026 25 O -0.297 6.297 26 H 0.027 0.973 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.260 -5.853 11.586 15.386 hybrid contribution -2.135 0.003 -0.805 2.282 sum 6.126 -5.851 10.780 13.710 Atomic orbital electron populations 1.21086 0.84555 0.98971 0.97439 1.44582 1.01377 1.02822 1.83954 1.19973 1.09229 0.91291 1.29879 0.94226 1.27023 1.01853 1.02226 0.92572 1.70932 1.36257 1.29704 1.17817 0.83281 0.74610 0.74428 0.76441 1.19401 1.20718 1.20758 1.20972 0.98857 0.83978 0.79850 1.51828 1.27251 1.43077 1.13505 1.23014 0.82591 0.77505 0.88053 1.90574 1.26799 1.49349 1.78536 1.22474 0.94655 0.98597 0.94048 1.21550 1.01421 0.92171 1.02071 1.21475 0.99951 1.00541 0.95390 1.22306 0.91206 0.99733 0.84176 0.90172 1.22913 0.89717 0.98748 0.85061 0.89962 1.23269 0.96392 1.00258 0.99220 1.23145 0.95417 1.03858 0.96246 1.23305 0.83218 1.01553 0.94559 1.88322 1.21576 1.91046 1.28712 0.97296 0.95485 0.93677 0.93607 0.94132 0.88041 0.88459 0.90182 0.93029 0.94196 0.89774 0.88804 0.91506 0.92240 0.89392 0.89110 0.90690 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.86 10.74 127.77 1.37 7.23 16 2 N -0.60 -30.81 2.87 -738.77 -2.12 -32.93 16 3 C -0.37 -20.26 9.34 84.03 0.78 -19.48 16 4 H 0.04 2.22 7.98 -2.91 -0.02 2.20 16 5 C -0.04 -1.90 4.62 84.86 0.39 -1.51 16 6 N -0.91 -50.44 12.28 21.65 0.27 -50.17 16 7 Si 1.09 46.74 29.42 68.60 2.02 48.76 16 8 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 C 0.37 17.53 6.25 170.96 1.07 18.60 16 12 N -0.62 -25.63 3.40 -892.61 -3.03 -28.67 16 13 C 0.50 20.27 8.20 79.69 0.65 20.92 16 14 O -0.57 -26.98 18.03 -3.03 -0.05 -27.04 16 15 C -0.09 -2.85 1.57 -53.01 -0.08 -2.93 16 16 C -0.11 -2.73 8.02 71.98 0.58 -2.15 16 17 C -0.12 -2.98 9.24 71.98 0.66 -2.32 16 18 C 0.13 4.50 3.60 37.03 0.13 4.64 16 19 H 0.08 3.01 7.99 -2.39 -0.02 2.99 16 20 C 0.09 2.82 2.54 31.26 0.08 2.90 16 21 H 0.08 2.36 6.53 -2.39 -0.02 2.35 16 22 C -0.15 -5.05 5.53 32.09 0.18 -4.87 16 23 C -0.15 -3.54 7.02 31.89 0.22 -3.32 16 24 C 0.05 1.05 7.80 72.45 0.56 1.62 16 25 O -0.38 -9.92 9.93 -148.98 -1.48 -11.40 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.03 1.25 8.11 -2.39 -0.02 1.23 16 28 H 0.04 2.03 8.00 -2.38 -0.02 2.01 16 29 H 0.25 14.71 7.61 -92.71 -0.71 14.01 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 4.99 3.70 -2.38 -0.01 4.98 16 32 H 0.10 2.03 6.90 -2.39 -0.02 2.01 16 33 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 34 H 0.05 1.28 6.99 -2.39 -0.02 1.27 16 35 H 0.04 1.18 8.03 -2.39 -0.02 1.16 16 36 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.46 6.92 -2.38 -0.02 2.44 16 39 H 0.06 2.30 7.45 -2.38 -0.02 2.29 16 40 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -64.19 341.15 3.26 -60.93 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 1.05 Total: 21.18 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.61 Total: 19.34 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -4.89 Total: -111.77 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.53 Total: -38.44 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.02 Total: 48.76 kcal Total: -64.19 3.26 -60.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811742620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.488 kcal (2) G-P(sol) polarization free energy of solvation -64.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds