Wall clock time and date at job start Tue Mar 31 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 120.00032 * 2 1 4 4 H 1.08000 * 120.00063 * 203.08136 * 3 2 1 5 5 C 1.38821 * 119.99803 * 23.07989 * 3 2 1 6 6 N 1.31620 * 120.00079 * 12.93277 * 5 3 2 7 7 Si 1.86797 * 119.99766 * 192.93465 * 5 3 2 8 8 H 1.48507 * 109.47016 * 90.00056 * 7 5 3 9 9 H 1.48498 * 109.47101 * 209.99903 * 7 5 3 10 10 H 1.48500 * 109.47098 * 329.99966 * 7 5 3 11 11 C 1.46502 * 119.99920 * 180.02562 * 2 1 3 12 12 N 1.46491 * 109.46889 * 90.00146 * 11 2 1 13 13 C 1.36129 * 132.50347 * 269.93399 * 12 11 2 14 14 O 1.21283 * 134.15636 * 0.02562 * 13 12 11 15 15 C 1.51507 * 91.66297 * 179.97438 * 13 12 11 16 16 C 1.53002 * 113.69035 * 245.62955 * 15 13 12 17 17 C 1.53005 * 113.77880 * 114.49303 * 15 13 12 18 18 C 1.47388 * 132.38333 * 89.99859 * 12 11 2 19 19 H 1.08999 * 113.70853 * 294.46125 * 18 12 11 20 20 C 1.53008 * 113.70671 * 65.55724 * 18 12 11 21 21 H 1.09001 * 110.33150 * 161.59787 * 20 18 12 22 22 C 1.54471 * 110.37214 * 283.84999 * 20 18 12 23 23 C 1.54505 * 104.06509 * 142.80778 * 22 20 18 24 24 C 1.54477 * 104.06206 * 0.02562 * 23 22 20 25 25 O 1.44423 * 104.90162 * 335.96572 * 24 23 22 26 26 H 1.09002 * 109.47127 * 275.12090 * 1 2 3 27 27 H 1.09000 * 109.47514 * 35.12152 * 1 2 3 28 28 H 1.08997 * 109.47385 * 155.12477 * 1 2 3 29 29 H 0.96996 * 120.00037 * 179.97438 * 6 5 3 30 30 H 1.08993 * 109.46876 * 329.99910 * 11 2 1 31 31 H 1.09000 * 109.46934 * 209.99823 * 11 2 1 32 32 H 1.08999 * 109.46947 * 157.00697 * 16 15 13 33 33 H 1.09005 * 109.46835 * 277.00068 * 16 15 13 34 34 H 1.08996 * 109.47381 * 37.00315 * 16 15 13 35 35 H 1.09000 * 109.47068 * 322.94854 * 17 15 13 36 36 H 1.08996 * 109.46712 * 82.94972 * 17 15 13 37 37 H 1.08998 * 109.46897 * 202.95168 * 17 15 13 38 38 H 1.09003 * 110.51228 * 24.16559 * 22 20 18 39 39 H 1.08999 * 110.63069 * 261.50951 * 22 20 18 40 40 H 1.08999 * 110.51323 * 241.35753 * 23 22 20 41 41 H 1.09001 * 110.51495 * 118.64302 * 23 22 20 42 42 H 1.09002 * 110.37395 * 94.85040 * 24 23 22 43 43 H 1.09004 * 110.37251 * 217.07728 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1648 1.2234 -0.3667 5 6 1.5389 2.3400 0.4713 6 7 0.4123 2.2594 1.1472 7 14 2.3158 4.0073 0.1462 8 1 1.7979 4.5537 -1.1339 9 1 1.9764 4.9361 1.2541 10 1 3.7908 3.8578 0.0599 11 6 2.1975 -1.2688 -0.0006 12 7 2.4416 -1.6910 -1.3819 13 6 1.7263 -2.4588 -2.2490 14 8 0.6665 -3.0446 -2.1824 15 6 2.7745 -2.2923 -3.3302 16 6 2.2811 -1.5113 -4.5499 17 6 3.4869 -3.5936 -3.7045 18 6 3.5500 -1.4330 -2.3185 19 1 3.6418 -0.3871 -2.6115 20 6 4.8810 -2.0480 -1.8809 21 1 5.5642 -2.1142 -2.7277 22 6 5.5118 -1.2126 -0.7450 23 6 6.1567 -2.2666 0.1826 24 6 5.8398 -3.6141 -0.5031 25 8 4.6653 -3.3566 -1.3031 26 1 -0.3633 0.0917 1.0236 27 1 -0.3634 0.8405 -0.5912 28 1 -0.3634 -0.9323 -0.4323 29 1 -0.0142 3.0658 1.4768 30 1 1.6084 -2.0285 0.5129 31 1 3.1499 -1.1386 0.5133 32 1 3.1338 -1.0815 -5.0754 33 1 1.7434 -2.1836 -5.2185 34 1 1.6145 -0.7126 -4.2246 35 1 3.6330 -4.1982 -2.8095 36 1 2.8801 -4.1466 -4.4215 37 1 4.4549 -3.3629 -4.1492 38 1 4.7440 -0.6527 -0.2110 39 1 6.2701 -0.5371 -1.1407 40 1 5.7078 -2.2278 1.1750 41 1 7.2342 -2.1137 0.2435 42 1 6.6711 -3.9219 -1.1375 43 1 5.6298 -4.3798 0.2438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811742621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:25 Heat of formation + Delta-G solvation = -26.011681 kcal Electronic energy + Delta-G solvation = -24363.719108 eV Core-core repulsion = 21024.923947 eV Total energy + Delta-G solvation = -3338.795161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86365 -38.62626 -35.99766 -35.48198 -32.64533 -31.92920 -30.80344 -29.67463 -27.21304 -26.86240 -25.84884 -24.44338 -22.44706 -21.63731 -20.83974 -20.38229 -17.41552 -17.07735 -16.53825 -16.00105 -15.87684 -15.64941 -14.96161 -14.72996 -14.36923 -13.88270 -13.47589 -13.45470 -13.27768 -12.88747 -12.51725 -12.21057 -12.09843 -11.99100 -11.79753 -11.70912 -11.58671 -11.27394 -11.05218 -10.96345 -10.83457 -10.79828 -10.57789 -10.29863 -10.23907 -10.03370 -9.97658 -9.64272 -9.08250 -8.62270 -8.06326 -6.93360 -5.81267 -3.30585 3.20264 3.30456 3.37446 3.39302 3.66710 3.90548 4.36483 4.44036 4.57302 4.72932 4.94298 4.97480 5.11170 5.20265 5.29957 5.39018 5.42591 5.54157 5.58355 5.68196 5.71603 5.76108 5.89024 5.90153 5.91575 6.04287 6.06375 6.10066 6.13570 6.23999 6.30995 6.51503 6.59002 6.85078 6.92530 7.30491 7.39236 7.48827 7.69088 7.75110 8.29263 8.99828 9.12936 9.75452 10.24838 11.22637 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.006805 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.788739 B = 4113.661849 C = 4821.556623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.587 5.587 3 C -0.264 4.264 4 H 0.068 0.932 5 C 0.008 3.992 6 N -0.899 5.899 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.362 3.638 12 N -0.609 5.609 13 C 0.536 3.464 14 O -0.525 6.525 15 C -0.121 4.121 16 C -0.126 4.126 17 C -0.125 4.125 18 C 0.137 3.863 19 H 0.106 0.894 20 C 0.078 3.922 21 H 0.077 0.923 22 C -0.156 4.156 23 C -0.152 4.152 24 C 0.042 3.958 25 O -0.354 6.354 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.004 0.996 29 H 0.254 0.746 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 -8.842 -7.091 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.310 5.310 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.191 4.191 6 N -0.543 5.543 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.155 3.845 12 N -0.350 5.350 13 C 0.321 3.679 14 O -0.400 6.400 15 C -0.125 4.125 16 C -0.184 4.184 17 C -0.183 4.183 18 C 0.032 3.968 19 H 0.123 0.877 20 C 0.020 3.980 21 H 0.095 0.905 22 C -0.193 4.193 23 C -0.190 4.190 24 C -0.035 4.035 25 O -0.273 6.273 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.508 -9.049 -6.687 16.095 hybrid contribution 0.608 1.368 -0.029 1.497 sum 12.116 -7.681 -6.716 15.840 Atomic orbital electron populations 1.20870 0.82412 0.95994 0.99590 1.44570 1.02439 1.01327 1.82616 1.19124 0.98147 0.85727 1.36399 0.91456 1.25051 0.97639 0.98606 0.97818 1.70086 1.19228 1.27431 1.37549 0.86268 0.78709 0.84057 0.77515 1.21418 1.21647 1.20401 1.20758 0.96028 0.87429 0.80291 1.52801 1.19218 1.48553 1.14415 1.22020 0.84362 0.77072 0.84484 1.90638 1.22412 1.45966 1.81012 1.22985 0.95992 0.97363 0.96150 1.21531 1.01293 0.99879 0.95651 1.21660 0.99026 0.95029 1.02562 1.22553 0.87398 0.98931 0.87919 0.87657 1.23143 0.95764 0.83324 0.95801 0.90514 1.23062 1.01040 0.98418 0.96822 1.22891 1.00918 0.94904 1.00266 1.23357 0.88718 0.97347 0.94044 1.89285 1.39634 1.33561 1.64803 0.94621 0.94185 0.97718 0.93542 0.92103 0.90952 0.91750 0.91879 0.91869 0.89974 0.92582 0.92322 0.89069 0.90682 0.90656 0.91025 0.92783 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 8.98 59.85 0.54 4.61 16 2 N -0.59 -14.81 3.16 -184.86 -0.58 -15.39 16 3 C -0.26 -6.98 9.65 -15.05 -0.15 -7.12 16 4 H 0.07 1.70 7.86 -52.49 -0.41 1.28 16 5 C 0.01 0.23 5.10 -17.43 -0.09 0.14 16 6 N -0.90 -25.98 10.71 55.49 0.59 -25.39 16 7 Si 0.90 21.25 29.57 -169.99 -5.03 16.22 16 8 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.36 7.73 7.04 -63.76 -0.45 7.28 16 12 N -0.61 -11.69 3.02 -173.41 -0.52 -12.21 16 13 C 0.54 10.75 8.60 -10.14 -0.09 10.66 16 14 O -0.53 -12.43 18.03 5.55 0.10 -12.33 16 15 C -0.12 -1.82 1.41 -154.91 -0.22 -2.04 16 16 C -0.13 -1.68 9.14 37.16 0.34 -1.34 16 17 C -0.13 -1.60 7.89 37.16 0.29 -1.30 16 18 C 0.14 2.10 3.88 -67.22 -0.26 1.84 16 19 H 0.11 1.63 8.01 -51.93 -0.42 1.22 16 20 C 0.08 0.99 2.59 -25.96 -0.07 0.92 16 21 H 0.08 0.80 7.61 -51.93 -0.40 0.41 16 22 C -0.16 -1.93 6.56 -25.17 -0.17 -2.10 16 23 C -0.15 -1.62 7.09 -25.17 -0.18 -1.80 16 24 C 0.04 0.45 7.62 37.93 0.29 0.74 16 25 O -0.35 -4.82 8.20 -35.23 -0.29 -5.11 16 26 H 0.04 0.98 7.34 -51.93 -0.38 0.60 16 27 H 0.04 1.11 7.34 -51.93 -0.38 0.73 16 28 H 0.00 0.11 8.03 -51.93 -0.42 -0.31 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.07 1.46 5.94 -51.93 -0.31 1.15 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.08 1.17 5.75 -51.93 -0.30 0.87 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 38 H 0.09 1.41 5.58 -51.93 -0.29 1.12 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -31.60 340.12 -7.85 -39.45 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.05 Total: -0.85 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -0.20 Total: 10.49 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.51 Total: -52.99 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.19 Total: -17.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.60 -7.85 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811742621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.434 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds