Wall clock time and date at job start Tue Mar 31 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 120.00032 * 2 1 4 4 H 1.08000 * 120.00063 * 203.08136 * 3 2 1 5 5 C 1.38821 * 119.99803 * 23.07989 * 3 2 1 6 6 N 1.31620 * 120.00079 * 12.93277 * 5 3 2 7 7 Si 1.86797 * 119.99766 * 192.93465 * 5 3 2 8 8 H 1.48507 * 109.47016 * 90.00056 * 7 5 3 9 9 H 1.48498 * 109.47101 * 209.99903 * 7 5 3 10 10 H 1.48500 * 109.47098 * 329.99966 * 7 5 3 11 11 C 1.46502 * 119.99920 * 180.02562 * 2 1 3 12 12 N 1.46491 * 109.46889 * 90.00146 * 11 2 1 13 13 C 1.36129 * 132.50347 * 269.93399 * 12 11 2 14 14 O 1.21283 * 134.15636 * 0.02562 * 13 12 11 15 15 C 1.51507 * 91.66297 * 179.97438 * 13 12 11 16 16 C 1.53002 * 113.69035 * 245.62955 * 15 13 12 17 17 C 1.53005 * 113.77880 * 114.49303 * 15 13 12 18 18 C 1.47388 * 132.38333 * 89.99859 * 12 11 2 19 19 H 1.08999 * 113.70853 * 294.46125 * 18 12 11 20 20 C 1.53008 * 113.70671 * 65.55724 * 18 12 11 21 21 H 1.09001 * 110.33150 * 161.59787 * 20 18 12 22 22 C 1.54471 * 110.37214 * 283.84999 * 20 18 12 23 23 C 1.54505 * 104.06509 * 142.80778 * 22 20 18 24 24 C 1.54477 * 104.06206 * 0.02562 * 23 22 20 25 25 O 1.44423 * 104.90162 * 335.96572 * 24 23 22 26 26 H 1.09002 * 109.47127 * 275.12090 * 1 2 3 27 27 H 1.09000 * 109.47514 * 35.12152 * 1 2 3 28 28 H 1.08997 * 109.47385 * 155.12477 * 1 2 3 29 29 H 0.96996 * 120.00037 * 179.97438 * 6 5 3 30 30 H 1.08993 * 109.46876 * 329.99910 * 11 2 1 31 31 H 1.09000 * 109.46934 * 209.99823 * 11 2 1 32 32 H 1.08999 * 109.46947 * 157.00697 * 16 15 13 33 33 H 1.09005 * 109.46835 * 277.00068 * 16 15 13 34 34 H 1.08996 * 109.47381 * 37.00315 * 16 15 13 35 35 H 1.09000 * 109.47068 * 322.94854 * 17 15 13 36 36 H 1.08996 * 109.46712 * 82.94972 * 17 15 13 37 37 H 1.08998 * 109.46897 * 202.95168 * 17 15 13 38 38 H 1.09003 * 110.51228 * 24.16559 * 22 20 18 39 39 H 1.08999 * 110.63069 * 261.50951 * 22 20 18 40 40 H 1.08999 * 110.51323 * 241.35753 * 23 22 20 41 41 H 1.09001 * 110.51495 * 118.64302 * 23 22 20 42 42 H 1.09002 * 110.37395 * 94.85040 * 24 23 22 43 43 H 1.09004 * 110.37251 * 217.07728 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1648 1.2234 -0.3667 5 6 1.5389 2.3400 0.4713 6 7 0.4123 2.2594 1.1472 7 14 2.3158 4.0073 0.1462 8 1 1.7979 4.5537 -1.1339 9 1 1.9764 4.9361 1.2541 10 1 3.7908 3.8578 0.0599 11 6 2.1975 -1.2688 -0.0006 12 7 2.4416 -1.6910 -1.3819 13 6 1.7263 -2.4588 -2.2490 14 8 0.6665 -3.0446 -2.1824 15 6 2.7745 -2.2923 -3.3302 16 6 2.2811 -1.5113 -4.5499 17 6 3.4869 -3.5936 -3.7045 18 6 3.5500 -1.4330 -2.3185 19 1 3.6418 -0.3871 -2.6115 20 6 4.8810 -2.0480 -1.8809 21 1 5.5642 -2.1142 -2.7277 22 6 5.5118 -1.2126 -0.7450 23 6 6.1567 -2.2666 0.1826 24 6 5.8398 -3.6141 -0.5031 25 8 4.6653 -3.3566 -1.3031 26 1 -0.3633 0.0917 1.0236 27 1 -0.3634 0.8405 -0.5912 28 1 -0.3634 -0.9323 -0.4323 29 1 -0.0142 3.0658 1.4768 30 1 1.6084 -2.0285 0.5129 31 1 3.1499 -1.1386 0.5133 32 1 3.1338 -1.0815 -5.0754 33 1 1.7434 -2.1836 -5.2185 34 1 1.6145 -0.7126 -4.2246 35 1 3.6330 -4.1982 -2.8095 36 1 2.8801 -4.1466 -4.4215 37 1 4.4549 -3.3629 -4.1492 38 1 4.7440 -0.6527 -0.2110 39 1 6.2701 -0.5371 -1.1407 40 1 5.7078 -2.2278 1.1750 41 1 7.2342 -2.1137 0.2435 42 1 6.6711 -3.9219 -1.1375 43 1 5.6298 -4.3798 0.2438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811742621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:25 Heat of formation + Delta-G solvation = -45.609860 kcal Electronic energy + Delta-G solvation = -24364.568948 eV Core-core repulsion = 21024.923947 eV Total energy + Delta-G solvation = -3339.645002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.18503 -39.71946 -37.70353 -37.29141 -34.20827 -32.96578 -32.55354 -30.71081 -28.62370 -28.23462 -27.89333 -25.62832 -24.16847 -22.68246 -22.07631 -21.84501 -18.97548 -18.68240 -17.96545 -17.36769 -17.29904 -16.88788 -16.65015 -15.82027 -15.77531 -15.43374 -15.17931 -14.80342 -14.58086 -14.25796 -13.98271 -13.75164 -13.36999 -13.22482 -13.10976 -12.96489 -12.88910 -12.72194 -12.63914 -12.53188 -12.36690 -12.13456 -11.98331 -11.96465 -11.86055 -11.39269 -11.32942 -10.84169 -10.58067 -10.47834 -9.65574 -8.99192 -7.88506 -5.41843 1.44845 1.47261 1.55754 1.63084 2.20060 2.48642 2.89677 3.12876 3.28714 3.42579 3.65224 3.71697 3.95351 4.07935 4.11562 4.13086 4.27680 4.37784 4.44503 4.54933 4.63984 4.68180 4.75812 4.81589 4.85852 4.92174 5.00457 5.02889 5.06656 5.08689 5.14357 5.22881 5.25682 5.30953 5.48399 5.54757 5.60741 5.81943 5.88209 6.08396 6.22947 7.03313 7.40778 7.71991 8.20636 9.15834 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.006805 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.788739 B = 4113.661849 C = 4821.556623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.605 5.605 3 C -0.262 4.262 4 H 0.081 0.919 5 C -0.051 4.051 6 N -0.939 5.939 7 Si 0.973 3.027 8 H -0.289 1.289 9 H -0.297 1.297 10 H -0.258 1.258 11 C 0.371 3.629 12 N -0.617 5.617 13 C 0.512 3.488 14 O -0.574 6.574 15 C -0.100 4.100 16 C -0.124 4.124 17 C -0.119 4.119 18 C 0.139 3.861 19 H 0.107 0.893 20 C 0.083 3.917 21 H 0.116 0.884 22 C -0.157 4.157 23 C -0.148 4.148 24 C 0.041 3.959 25 O -0.379 6.379 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.004 0.996 29 H 0.249 0.751 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.187 -9.022 -9.170 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.329 5.329 3 C -0.392 4.392 4 H 0.099 0.901 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.800 3.200 8 H -0.216 1.216 9 H -0.224 1.224 10 H -0.182 1.182 11 C 0.164 3.836 12 N -0.355 5.355 13 C 0.299 3.701 14 O -0.453 6.453 15 C -0.104 4.104 16 C -0.182 4.182 17 C -0.176 4.176 18 C 0.035 3.965 19 H 0.124 0.876 20 C 0.025 3.975 21 H 0.133 0.867 22 C -0.194 4.194 23 C -0.186 4.186 24 C -0.036 4.036 25 O -0.299 6.299 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.022 0.978 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.307 -9.260 -8.799 19.937 hybrid contribution -0.527 1.318 0.625 1.551 sum 14.780 -7.943 -8.174 18.664 Atomic orbital electron populations 1.20466 0.83647 0.94705 0.97675 1.44727 1.01920 1.02504 1.83712 1.19483 0.98534 0.86036 1.35134 0.90120 1.25908 0.98386 1.02269 0.98052 1.70256 1.21009 1.27885 1.39319 0.85187 0.78907 0.79252 0.76613 1.21593 1.22412 1.18165 1.20631 0.95850 0.85551 0.81601 1.52539 1.20912 1.48197 1.13862 1.23137 0.84490 0.76239 0.86221 1.90589 1.24687 1.47793 1.82223 1.22940 0.93353 0.98819 0.95265 1.21575 1.02362 0.99120 0.95094 1.21657 1.00503 0.93174 1.02258 1.22857 0.87725 0.99506 0.86376 0.87563 1.23214 0.94276 0.82943 0.97057 0.86682 1.23037 1.00637 0.98868 0.96894 1.22880 1.02220 0.94473 0.99036 1.23526 0.88537 0.97217 0.94297 1.89275 1.41388 1.33755 1.65447 0.96759 0.96559 0.97766 0.94166 0.93707 0.89695 0.88006 0.90920 0.94589 0.91437 0.91975 0.88716 0.92767 0.88466 0.92268 0.88469 0.90041 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.94 8.98 127.77 1.15 11.08 16 2 N -0.60 -31.39 3.16 -738.78 -2.34 -33.72 16 3 C -0.26 -13.93 9.65 84.04 0.81 -13.12 16 4 H 0.08 3.99 7.86 -2.91 -0.02 3.97 16 5 C -0.05 -2.80 5.10 84.86 0.43 -2.37 16 6 N -0.94 -56.02 10.71 21.65 0.23 -55.79 16 7 Si 0.97 43.77 29.57 68.60 2.03 45.80 16 8 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 9 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 11 C 0.37 16.25 7.04 170.96 1.20 17.45 16 12 N -0.62 -23.69 3.02 -820.16 -2.48 -26.17 16 13 C 0.51 20.72 8.60 87.59 0.75 21.47 16 14 O -0.57 -28.16 18.03 -3.04 -0.05 -28.22 16 15 C -0.10 -2.79 1.41 -52.41 -0.07 -2.87 16 16 C -0.12 -2.99 9.14 71.98 0.66 -2.33 16 17 C -0.12 -2.60 7.89 71.98 0.57 -2.03 16 18 C 0.14 3.94 3.88 44.97 0.17 4.11 16 19 H 0.11 3.02 8.01 -2.39 -0.02 3.00 16 20 C 0.08 1.80 2.59 31.10 0.08 1.88 16 21 H 0.12 1.71 7.61 -2.39 -0.02 1.69 16 22 C -0.16 -3.43 6.56 31.61 0.21 -3.22 16 23 C -0.15 -2.73 7.09 31.61 0.22 -2.51 16 24 C 0.04 0.73 7.62 72.48 0.55 1.28 16 25 O -0.38 -9.32 8.20 -148.98 -1.22 -10.54 16 26 H 0.01 0.83 7.34 -2.39 -0.02 0.81 16 27 H 0.02 0.93 7.34 -2.39 -0.02 0.91 16 28 H 0.00 0.20 8.03 -2.39 -0.02 0.18 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 30 H 0.04 2.07 8.07 -2.39 -0.02 2.05 16 31 H 0.09 3.49 5.94 -2.39 -0.01 3.47 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.03 1.06 8.06 -2.39 -0.02 1.04 16 35 H 0.07 1.74 5.75 -2.39 -0.01 1.73 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.43 7.51 -2.39 -0.02 1.41 16 38 H 0.05 1.60 5.58 -2.39 -0.01 1.59 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -71.92 340.12 3.89 -68.03 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.98 Total: 11.77 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 6.74 Total: 28.83 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -4.58 Total: -115.68 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.28 Total: -38.75 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -71.92 3.89 -68.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811742621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.419 kcal (2) G-P(sol) polarization free energy of solvation -71.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds