Wall clock time and date at job start Tue Mar 31 2020 01:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00232 * 2 1 4 4 H 1.07994 * 119.99926 * 185.23900 * 3 2 1 5 5 C 1.38812 * 119.99548 * 5.24592 * 3 2 1 6 6 N 1.31618 * 120.00348 * 5.25200 * 5 3 2 7 7 Si 1.86801 * 119.99729 * 185.25939 * 5 3 2 8 8 H 1.48495 * 109.47282 * 59.99670 * 7 5 3 9 9 H 1.48501 * 109.47128 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46909 * 299.99840 * 7 5 3 11 11 C 1.46503 * 119.99956 * 180.02562 * 2 1 3 12 12 N 1.46505 * 109.46957 * 94.97591 * 11 2 1 13 13 C 1.35078 * 130.88578 * 265.04075 * 12 11 2 14 14 O 1.21281 * 135.56695 * 0.02562 * 13 12 11 15 15 C 1.50932 * 88.86811 * 179.97438 * 13 12 11 16 16 C 1.52996 * 113.27234 * 115.00535 * 15 13 12 17 17 C 1.52994 * 113.27256 * 244.81163 * 15 13 12 18 18 C 1.46764 * 130.88410 * 85.01212 * 12 11 2 19 19 H 1.08996 * 114.12051 * 293.74846 * 18 12 11 20 20 C 1.52998 * 114.11972 * 66.29427 * 18 12 11 21 21 H 1.08996 * 109.82576 * 38.83709 * 20 18 12 22 22 C 1.54383 * 109.82665 * 277.85351 * 20 18 12 23 23 C 1.55307 * 102.25441 * 219.13131 * 22 20 18 24 24 C 1.54948 * 100.94046 * 34.13538 * 23 22 20 25 25 O 1.43244 * 109.82710 * 159.72543 * 20 18 12 26 26 H 1.08998 * 109.47260 * 174.88647 * 1 2 3 27 27 H 1.08997 * 109.47100 * 294.88834 * 1 2 3 28 28 H 1.09001 * 109.46812 * 54.88942 * 1 2 3 29 29 H 0.97000 * 120.00125 * 179.97438 * 6 5 3 30 30 H 1.08996 * 109.47505 * 334.98107 * 11 2 1 31 31 H 1.08997 * 109.46954 * 214.97303 * 11 2 1 32 32 H 1.09005 * 109.46833 * 79.51101 * 16 15 13 33 33 H 1.08999 * 109.47340 * 319.50651 * 16 15 13 34 34 H 1.09004 * 109.47303 * 199.50418 * 16 15 13 35 35 H 1.08999 * 109.47010 * 280.18373 * 17 15 13 36 36 H 1.09005 * 109.47391 * 40.18320 * 17 15 13 37 37 H 1.08997 * 109.47744 * 160.18454 * 17 15 13 38 38 H 1.08998 * 110.85489 * 337.32507 * 22 20 18 39 39 H 1.09003 * 110.84682 * 100.94642 * 22 20 18 40 40 H 1.09004 * 111.12489 * 276.22039 * 23 22 20 41 41 H 1.08996 * 111.12725 * 152.05348 * 23 22 20 42 42 H 1.09000 * 110.31174 * 204.64309 * 24 23 22 43 43 H 1.08997 * 110.39486 * 82.51260 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2263 1.1878 -0.0854 5 6 1.4600 2.3855 0.1099 6 7 0.1603 2.3808 0.3178 7 14 2.3764 4.0066 -0.0374 8 1 3.0275 4.0879 -1.3695 9 1 1.4193 5.1318 0.1147 10 1 3.4107 4.0888 1.0249 11 6 2.1975 -1.2688 -0.0006 12 7 2.5454 -1.6311 -1.3768 13 6 1.9170 -2.4299 -2.2665 14 8 0.9052 -3.0987 -2.2663 15 6 3.0123 -2.1329 -3.2616 16 6 3.8449 -3.3627 -3.6291 17 6 2.5204 -1.3672 -4.4914 18 6 3.6841 -1.2380 -2.2151 19 1 3.6998 -0.1802 -2.4775 20 6 5.0345 -1.7599 -1.7201 21 1 4.9212 -2.7744 -1.3380 22 6 5.5769 -0.8368 -0.6078 23 6 7.0953 -0.7887 -0.9306 24 6 7.0694 -0.8625 -2.4781 25 8 5.9830 -1.7479 -2.7934 26 1 -0.3634 -1.0235 -0.0916 27 1 -0.3633 0.4325 0.9322 28 1 -0.3633 0.5911 -0.8407 29 1 -0.3216 3.2191 0.3950 30 1 1.5727 -2.0492 0.4337 31 1 3.1084 -1.1626 0.5885 32 1 3.3036 -3.9623 -4.3610 33 1 4.0275 -3.9584 -2.7348 34 1 4.7968 -3.0434 -4.0536 35 1 2.0458 -2.0608 -5.1854 36 1 1.7987 -0.6104 -4.1836 37 1 3.3661 -0.8847 -4.9814 38 1 5.1338 0.1567 -0.6777 39 1 5.4032 -1.2718 0.3764 40 1 7.6147 -1.6473 -0.5050 41 1 7.5400 0.1460 -0.5893 42 1 8.0090 -1.2681 -2.8533 43 1 6.8880 0.1249 -2.9025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811742624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:27 Heat of formation + Delta-G solvation = -21.156176 kcal Electronic energy + Delta-G solvation = -24260.401003 eV Core-core repulsion = 20921.816393 eV Total energy + Delta-G solvation = -3338.584610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02323 -38.87323 -36.16978 -35.55033 -32.71578 -31.96100 -30.74469 -29.77703 -27.19408 -26.79685 -25.96889 -24.47403 -22.36783 -21.67636 -21.00228 -20.35570 -17.60764 -16.96091 -16.75561 -16.28927 -15.80850 -15.60012 -15.35529 -14.76737 -14.01550 -13.78908 -13.55786 -13.40949 -13.21635 -12.99756 -12.59764 -12.30530 -12.06410 -11.99279 -11.88678 -11.53314 -11.49746 -11.24920 -11.22305 -11.04035 -10.93860 -10.82219 -10.70889 -10.37632 -10.17131 -10.06069 -9.90538 -9.59375 -9.10450 -8.64051 -8.18844 -7.12495 -5.74421 -3.21605 3.10143 3.27022 3.34932 3.37120 3.39397 4.12199 4.39270 4.43476 4.54789 4.65631 4.85839 4.96991 5.10008 5.27535 5.37224 5.39746 5.42112 5.46261 5.54733 5.65853 5.76435 5.82188 5.86550 5.89721 5.94787 6.00430 6.06841 6.15806 6.17644 6.30609 6.31610 6.36968 6.58377 6.78392 7.00739 7.23444 7.36249 7.56716 7.64660 7.86286 8.25914 8.91448 9.13751 9.75042 10.18281 11.22914 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.007545 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.297478 B = 3710.136766 C = 4876.535768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.073 0.927 5 C 0.001 3.999 6 N -0.910 5.910 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.289 1.289 10 H -0.283 1.283 11 C 0.348 3.652 12 N -0.614 5.614 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.124 4.124 18 C 0.132 3.868 19 H 0.101 0.899 20 C 0.088 3.912 21 H 0.084 0.916 22 C -0.151 4.151 23 C -0.156 4.156 24 C 0.048 3.952 25 O -0.368 6.368 26 H -0.004 1.004 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.253 0.747 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.157 -7.089 -4.936 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.316 5.316 3 C -0.384 4.384 4 H 0.091 0.909 5 C -0.196 4.196 6 N -0.556 5.556 7 Si 0.738 3.262 8 H -0.211 1.211 9 H -0.215 1.215 10 H -0.210 1.210 11 C 0.140 3.860 12 N -0.355 5.355 13 C 0.319 3.681 14 O -0.394 6.394 15 C -0.125 4.125 16 C -0.182 4.182 17 C -0.182 4.182 18 C 0.026 3.974 19 H 0.119 0.881 20 C 0.030 3.970 21 H 0.101 0.899 22 C -0.188 4.188 23 C -0.193 4.193 24 C -0.029 4.029 25 O -0.287 6.287 26 H 0.014 0.986 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.370 -7.317 -4.825 15.160 hybrid contribution 0.414 1.359 0.185 1.433 sum 12.784 -5.958 -4.639 14.847 Atomic orbital electron populations 1.21100 0.81354 0.93624 1.01952 1.44705 1.02978 1.01199 1.82708 1.19184 0.90980 0.83604 1.44590 0.90880 1.24920 0.95827 0.98051 1.00810 1.70209 1.06321 1.25149 1.53909 0.86285 0.78608 0.83349 0.77983 1.21055 1.21481 1.20952 1.21001 0.95343 0.87924 0.81769 1.52914 1.22308 1.45082 1.15203 1.21524 0.84367 0.77722 0.84488 1.90668 1.25585 1.42525 1.80649 1.22958 0.95562 0.97140 0.96810 1.21633 0.99982 0.95269 1.01335 1.21523 1.01326 0.99835 0.95557 1.22553 0.86909 0.99520 0.88371 0.88136 1.22766 0.88151 0.99372 0.86748 0.89869 1.23220 0.94711 1.01623 0.99267 1.23255 0.96934 1.02928 0.96206 1.23388 0.90463 0.94428 0.94574 1.88429 1.33196 1.65110 1.41948 0.98569 0.92950 0.94469 0.93642 0.91601 0.91621 0.92535 0.92815 0.90082 0.92084 0.91998 0.91631 0.89374 0.89929 0.90666 0.90020 0.90007 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.24 8.98 59.85 0.54 4.78 16 2 N -0.59 -14.64 3.17 -184.86 -0.59 -15.23 16 3 C -0.25 -6.59 9.84 -15.06 -0.15 -6.74 16 4 H 0.07 1.78 7.26 -52.49 -0.38 1.40 16 5 C 0.00 0.04 5.42 -17.43 -0.09 -0.06 16 6 N -0.91 -25.99 9.52 55.49 0.53 -25.47 16 7 Si 0.91 21.14 29.56 -169.99 -5.02 16.11 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.35 7.07 7.13 -63.74 -0.45 6.61 16 12 N -0.61 -11.57 3.26 -201.61 -0.66 -12.22 16 13 C 0.53 10.59 8.66 -10.74 -0.09 10.49 16 14 O -0.52 -11.99 18.03 5.56 0.10 -11.89 16 15 C -0.12 -1.91 1.34 -156.60 -0.21 -2.12 16 16 C -0.12 -1.66 7.87 37.16 0.29 -1.37 16 17 C -0.12 -1.84 9.06 37.15 0.34 -1.51 16 18 C 0.13 2.11 3.73 -67.68 -0.25 1.86 16 19 H 0.10 1.77 7.96 -51.93 -0.41 1.36 16 20 C 0.09 1.17 2.75 -26.01 -0.07 1.10 16 21 H 0.08 1.11 7.09 -51.93 -0.37 0.74 16 22 C -0.15 -1.88 6.00 -24.78 -0.15 -2.02 16 23 C -0.16 -1.53 7.16 -24.48 -0.18 -1.70 16 24 C 0.05 0.49 7.78 38.19 0.30 0.79 16 25 O -0.37 -4.64 8.86 -35.23 -0.31 -4.95 16 26 H 0.00 -0.11 7.77 -51.93 -0.40 -0.51 16 27 H 0.05 1.44 6.89 -51.93 -0.36 1.08 16 28 H 0.04 1.05 7.22 -51.93 -0.38 0.67 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.07 1.33 7.86 -51.93 -0.41 0.92 16 31 H 0.07 1.22 7.25 -51.93 -0.38 0.84 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.71 7.08 -51.93 -0.37 0.35 16 34 H 0.08 1.02 6.30 -51.93 -0.33 0.69 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.27 7.24 -51.93 -0.38 0.90 16 39 H 0.08 0.99 7.87 -51.93 -0.41 0.59 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -30.46 340.63 -8.08 -38.54 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.08 Total: -0.15 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.19 Total: 10.12 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.71 Total: -52.92 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.21 Total: -16.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.46 -8.08 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811742624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.388 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds