Wall clock time and date at job start Tue Mar 31 2020 01:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00232 * 2 1 4 4 H 1.07994 * 119.99926 * 185.23900 * 3 2 1 5 5 C 1.38812 * 119.99548 * 5.24592 * 3 2 1 6 6 N 1.31618 * 120.00348 * 5.25200 * 5 3 2 7 7 Si 1.86801 * 119.99729 * 185.25939 * 5 3 2 8 8 H 1.48495 * 109.47282 * 59.99670 * 7 5 3 9 9 H 1.48501 * 109.47128 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46909 * 299.99840 * 7 5 3 11 11 C 1.46503 * 119.99956 * 180.02562 * 2 1 3 12 12 N 1.46505 * 109.46957 * 94.97591 * 11 2 1 13 13 C 1.35078 * 130.88578 * 265.04075 * 12 11 2 14 14 O 1.21281 * 135.56695 * 0.02562 * 13 12 11 15 15 C 1.50932 * 88.86811 * 179.97438 * 13 12 11 16 16 C 1.52996 * 113.27234 * 115.00535 * 15 13 12 17 17 C 1.52994 * 113.27256 * 244.81163 * 15 13 12 18 18 C 1.46764 * 130.88410 * 85.01212 * 12 11 2 19 19 H 1.08996 * 114.12051 * 293.74846 * 18 12 11 20 20 C 1.52998 * 114.11972 * 66.29427 * 18 12 11 21 21 H 1.08996 * 109.82576 * 38.83709 * 20 18 12 22 22 C 1.54383 * 109.82665 * 277.85351 * 20 18 12 23 23 C 1.55307 * 102.25441 * 219.13131 * 22 20 18 24 24 C 1.54948 * 100.94046 * 34.13538 * 23 22 20 25 25 O 1.43244 * 109.82710 * 159.72543 * 20 18 12 26 26 H 1.08998 * 109.47260 * 174.88647 * 1 2 3 27 27 H 1.08997 * 109.47100 * 294.88834 * 1 2 3 28 28 H 1.09001 * 109.46812 * 54.88942 * 1 2 3 29 29 H 0.97000 * 120.00125 * 179.97438 * 6 5 3 30 30 H 1.08996 * 109.47505 * 334.98107 * 11 2 1 31 31 H 1.08997 * 109.46954 * 214.97303 * 11 2 1 32 32 H 1.09005 * 109.46833 * 79.51101 * 16 15 13 33 33 H 1.08999 * 109.47340 * 319.50651 * 16 15 13 34 34 H 1.09004 * 109.47303 * 199.50418 * 16 15 13 35 35 H 1.08999 * 109.47010 * 280.18373 * 17 15 13 36 36 H 1.09005 * 109.47391 * 40.18320 * 17 15 13 37 37 H 1.08997 * 109.47744 * 160.18454 * 17 15 13 38 38 H 1.08998 * 110.85489 * 337.32507 * 22 20 18 39 39 H 1.09003 * 110.84682 * 100.94642 * 22 20 18 40 40 H 1.09004 * 111.12489 * 276.22039 * 23 22 20 41 41 H 1.08996 * 111.12725 * 152.05348 * 23 22 20 42 42 H 1.09000 * 110.31174 * 204.64309 * 24 23 22 43 43 H 1.08997 * 110.39486 * 82.51260 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2263 1.1878 -0.0854 5 6 1.4600 2.3855 0.1099 6 7 0.1603 2.3808 0.3178 7 14 2.3764 4.0066 -0.0374 8 1 3.0275 4.0879 -1.3695 9 1 1.4193 5.1318 0.1147 10 1 3.4107 4.0888 1.0249 11 6 2.1975 -1.2688 -0.0006 12 7 2.5454 -1.6311 -1.3768 13 6 1.9170 -2.4299 -2.2665 14 8 0.9052 -3.0987 -2.2663 15 6 3.0123 -2.1329 -3.2616 16 6 3.8449 -3.3627 -3.6291 17 6 2.5204 -1.3672 -4.4914 18 6 3.6841 -1.2380 -2.2151 19 1 3.6998 -0.1802 -2.4775 20 6 5.0345 -1.7599 -1.7201 21 1 4.9212 -2.7744 -1.3380 22 6 5.5769 -0.8368 -0.6078 23 6 7.0953 -0.7887 -0.9306 24 6 7.0694 -0.8625 -2.4781 25 8 5.9830 -1.7479 -2.7934 26 1 -0.3634 -1.0235 -0.0916 27 1 -0.3633 0.4325 0.9322 28 1 -0.3633 0.5911 -0.8407 29 1 -0.3216 3.2191 0.3950 30 1 1.5727 -2.0492 0.4337 31 1 3.1084 -1.1626 0.5885 32 1 3.3036 -3.9623 -4.3610 33 1 4.0275 -3.9584 -2.7348 34 1 4.7968 -3.0434 -4.0536 35 1 2.0458 -2.0608 -5.1854 36 1 1.7987 -0.6104 -4.1836 37 1 3.3661 -0.8847 -4.9814 38 1 5.1338 0.1567 -0.6777 39 1 5.4032 -1.2718 0.3764 40 1 7.6147 -1.6473 -0.5050 41 1 7.5400 0.1460 -0.5893 42 1 8.0090 -1.2681 -2.8533 43 1 6.8880 0.1249 -2.9025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811742624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:27 Heat of formation + Delta-G solvation = -39.584772 kcal Electronic energy + Delta-G solvation = -24261.200127 eV Core-core repulsion = 20921.816393 eV Total energy + Delta-G solvation = -3339.383734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.40724 -39.93822 -37.85127 -37.36952 -34.25260 -33.02806 -32.46441 -30.82704 -28.54589 -28.33039 -27.96390 -25.71864 -24.11399 -22.56114 -22.14790 -22.03111 -19.06399 -18.80136 -17.97154 -17.65320 -17.36602 -16.84929 -16.73869 -16.32676 -15.48408 -15.18209 -15.08027 -14.82974 -14.70289 -14.18771 -13.87688 -13.82439 -13.51457 -13.42354 -13.18026 -13.03665 -12.86702 -12.66189 -12.55452 -12.51921 -12.26510 -12.18139 -12.07898 -11.98896 -11.91589 -11.60231 -11.37054 -10.83214 -10.62185 -10.51752 -9.74055 -9.13805 -7.78944 -5.29083 1.43742 1.47090 1.51878 1.54153 2.02050 2.47694 3.02376 3.05019 3.35064 3.42723 3.61885 3.66936 3.76731 4.03166 4.10008 4.13946 4.24988 4.28164 4.34075 4.48619 4.60066 4.68818 4.77813 4.79148 4.87549 4.90060 4.94632 5.01229 5.03983 5.06180 5.10639 5.22813 5.29242 5.35330 5.43592 5.55406 5.69908 5.73079 5.79568 6.12171 6.21034 7.06903 7.32580 7.76213 8.17931 9.18797 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.007545 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.297478 B = 3710.136766 C = 4876.535768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.611 5.611 3 C -0.250 4.250 4 H 0.089 0.911 5 C -0.061 4.061 6 N -0.947 5.947 7 Si 0.972 3.028 8 H -0.277 1.277 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.350 3.650 12 N -0.617 5.617 13 C 0.518 3.482 14 O -0.559 6.559 15 C -0.108 4.108 16 C -0.116 4.116 17 C -0.122 4.122 18 C 0.137 3.863 19 H 0.085 0.915 20 C 0.098 3.902 21 H 0.089 0.911 22 C -0.155 4.155 23 C -0.146 4.146 24 C 0.042 3.958 25 O -0.374 6.374 26 H 0.003 0.997 27 H 0.031 0.969 28 H 0.004 0.996 29 H 0.245 0.755 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.589 -7.635 -5.758 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.336 5.336 3 C -0.379 4.379 4 H 0.107 0.893 5 C -0.254 4.254 6 N -0.595 5.595 7 Si 0.800 3.200 8 H -0.203 1.203 9 H -0.227 1.227 10 H -0.195 1.195 11 C 0.143 3.857 12 N -0.357 5.357 13 C 0.305 3.695 14 O -0.437 6.437 15 C -0.111 4.111 16 C -0.173 4.173 17 C -0.180 4.180 18 C 0.033 3.967 19 H 0.103 0.897 20 C 0.040 3.960 21 H 0.106 0.894 22 C -0.192 4.192 23 C -0.183 4.183 24 C -0.034 4.034 25 O -0.293 6.293 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.023 0.977 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.879 -7.892 -5.669 18.616 hybrid contribution -0.610 1.449 0.414 1.626 sum 15.269 -6.444 -5.255 17.386 Atomic orbital electron populations 1.20672 0.82699 0.92991 0.99404 1.44872 1.02452 1.02502 1.83732 1.19581 0.91726 0.83943 1.42656 0.89287 1.25746 0.96615 1.01424 1.01595 1.70407 1.07884 1.25175 1.56082 0.85256 0.77350 0.78953 0.78410 1.20270 1.22715 1.19503 1.21073 0.95889 0.86216 0.82550 1.52625 1.23429 1.44823 1.14774 1.22297 0.84499 0.77085 0.85661 1.90631 1.27410 1.44123 1.81554 1.22901 0.93783 0.98237 0.96220 1.21610 1.00102 0.93906 1.01723 1.21536 1.01673 0.99412 0.95404 1.22702 0.87614 0.98911 0.87480 0.89707 1.22587 0.86774 0.99538 0.87150 0.89358 1.23202 0.96772 1.00090 0.99154 1.23244 0.94871 1.04268 0.95924 1.23603 0.90587 0.94260 0.94961 1.88412 1.33512 1.65610 1.41717 0.97797 0.95052 0.97746 0.94555 0.91826 0.89334 0.91636 0.92695 0.88523 0.90789 0.94814 0.89176 0.91560 0.89570 0.89139 0.88904 0.87550 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.09 8.98 127.77 1.15 11.24 16 2 N -0.61 -30.58 3.17 -738.78 -2.34 -32.93 16 3 C -0.25 -12.93 9.84 84.03 0.83 -12.10 16 4 H 0.09 4.23 7.26 -2.91 -0.02 4.21 16 5 C -0.06 -3.30 5.42 84.86 0.46 -2.84 16 6 N -0.95 -55.95 9.52 21.65 0.21 -55.74 16 7 Si 0.97 43.64 29.56 68.60 2.03 45.66 16 8 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 9 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 C 0.35 14.13 7.13 170.96 1.22 15.35 16 12 N -0.62 -22.96 3.26 -909.98 -2.96 -25.92 16 13 C 0.52 20.44 8.66 87.68 0.76 21.20 16 14 O -0.56 -26.19 18.03 -3.03 -0.05 -26.25 16 15 C -0.11 -3.23 1.34 -52.38 -0.07 -3.30 16 16 C -0.12 -2.76 7.87 71.98 0.57 -2.19 16 17 C -0.12 -3.45 9.06 71.98 0.65 -2.79 16 18 C 0.14 4.18 3.73 45.01 0.17 4.35 16 19 H 0.08 2.90 7.96 -2.39 -0.02 2.88 16 20 C 0.10 2.35 2.75 31.06 0.09 2.43 16 21 H 0.09 2.08 7.09 -2.39 -0.02 2.06 16 22 C -0.15 -3.44 6.00 31.86 0.19 -3.25 16 23 C -0.15 -2.32 7.16 32.05 0.23 -2.09 16 24 C 0.04 0.69 7.78 72.65 0.56 1.26 16 25 O -0.37 -8.07 8.86 -148.98 -1.32 -9.39 16 26 H 0.00 0.18 7.77 -2.39 -0.02 0.16 16 27 H 0.03 1.79 6.89 -2.39 -0.02 1.78 16 28 H 0.00 0.23 7.22 -2.39 -0.02 0.22 16 29 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.06 2.58 7.86 -2.39 -0.02 2.56 16 31 H 0.09 3.16 7.25 -2.39 -0.02 3.14 16 32 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.05 1.30 7.08 -2.39 -0.02 1.29 16 34 H 0.10 2.05 6.30 -2.39 -0.02 2.03 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.12 8.08 -2.38 -0.02 1.10 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 1.78 7.24 -2.39 -0.02 1.76 16 39 H 0.09 1.85 7.87 -2.39 -0.02 1.83 16 40 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -67.24 340.63 3.33 -63.90 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.98 Total: 13.40 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: 6.80 Total: 27.25 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -5.10 Total: -114.59 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -1.37 Total: -35.63 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.24 3.33 -63.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811742624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.319 kcal (2) G-P(sol) polarization free energy of solvation -67.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds