Wall clock time and date at job start Tue Mar 31 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 120.00025 * 2 1 4 4 H 1.07994 * 120.00106 * 204.31128 * 3 2 1 5 5 C 1.38811 * 119.99556 * 24.31374 * 3 2 1 6 6 N 1.31612 * 120.00578 * 13.95780 * 5 3 2 7 7 Si 1.86805 * 119.99448 * 193.96227 * 5 3 2 8 8 H 1.48500 * 109.47225 * 5.01507 * 7 5 3 9 9 H 1.48504 * 109.46924 * 125.01649 * 7 5 3 10 10 H 1.48496 * 109.47037 * 245.01171 * 7 5 3 11 11 C 1.46506 * 120.00144 * 179.97438 * 2 1 3 12 12 N 1.46496 * 109.47082 * 94.35411 * 11 2 1 13 13 C 1.35832 * 132.38261 * 96.42513 * 12 11 2 14 14 O 1.21280 * 134.17449 * 0.02562 * 13 12 11 15 15 C 1.51512 * 91.65183 * 180.02562 * 13 12 11 16 16 C 1.52996 * 113.68940 * 245.57477 * 15 13 12 17 17 C 1.52998 * 113.78050 * 114.43614 * 15 13 12 18 18 C 1.47391 * 132.37787 * 276.48452 * 12 11 2 19 19 H 1.09000 * 113.79643 * 65.54252 * 18 12 11 20 20 C 1.52999 * 113.70599 * 294.35676 * 18 12 11 21 21 H 1.09002 * 110.27221 * 203.11908 * 20 18 12 22 22 C 1.54945 * 110.30989 * 80.92398 * 20 18 12 23 23 C 1.55454 * 100.98852 * 204.68987 * 22 20 18 24 24 C 1.54375 * 102.18545 * 34.03967 * 23 22 20 25 25 O 1.43240 * 107.66713 * 338.74079 * 24 23 22 26 26 H 1.08999 * 109.47134 * 271.71871 * 1 2 3 27 27 H 1.08997 * 109.47699 * 31.72619 * 1 2 3 28 28 H 1.09004 * 109.47055 * 151.72914 * 1 2 3 29 29 H 0.97003 * 120.00430 * 180.02562 * 6 5 3 30 30 H 1.08998 * 109.47039 * 334.35133 * 11 2 1 31 31 H 1.09004 * 109.46620 * 214.35280 * 11 2 1 32 32 H 1.09001 * 109.47551 * 157.00270 * 16 15 13 33 33 H 1.09006 * 109.47042 * 277.00153 * 16 15 13 34 34 H 1.08998 * 109.47520 * 37.00237 * 16 15 13 35 35 H 1.08999 * 109.47379 * 322.95602 * 17 15 13 36 36 H 1.08998 * 109.46921 * 82.95252 * 17 15 13 37 37 H 1.09001 * 109.47067 * 202.94778 * 17 15 13 38 38 H 1.08999 * 111.12637 * 322.55560 * 22 20 18 39 39 H 1.08997 * 111.12269 * 86.68022 * 22 20 18 40 40 H 1.09002 * 110.83434 * 275.89395 * 23 22 20 41 41 H 1.08995 * 110.92231 * 152.22982 * 23 22 20 42 42 H 1.09005 * 109.83488 * 219.18121 * 24 23 22 43 43 H 1.09006 * 109.83356 * 98.29980 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1578 1.2274 -0.3850 5 6 1.5479 2.3347 0.4950 6 7 0.4452 2.2452 1.2079 7 14 2.3032 4.0079 0.1491 8 1 3.4602 3.8486 -0.7681 9 1 1.2879 4.8881 -0.4831 10 1 2.7617 4.6169 1.4234 11 6 2.1975 -1.2688 0.0006 12 7 2.5325 -1.6398 -1.3765 13 6 3.6533 -1.4677 -2.1243 14 8 4.7365 -0.9621 -1.9196 15 6 3.0175 -2.1560 -3.3149 16 6 3.6911 -3.4766 -3.6934 17 6 2.7978 -1.2339 -4.5158 18 6 1.7702 -2.3289 -2.4331 19 1 0.9031 -1.7702 -2.7854 20 6 1.4461 -3.7880 -2.1058 21 1 1.2660 -4.3496 -3.0224 22 6 0.2123 -3.8684 -1.1720 23 6 0.4549 -5.2380 -0.4778 24 6 1.9948 -5.2859 -0.3808 25 8 2.5204 -4.3821 -1.3599 26 1 -0.3633 0.0308 1.0272 27 1 -0.3634 0.8740 -0.5404 28 1 -0.3633 -0.9051 -0.4868 29 1 0.0244 3.0480 1.5535 30 1 1.5769 -2.0464 0.4457 31 1 3.1139 -1.1588 0.5805 32 1 2.9868 -4.0985 -4.2459 33 1 4.5630 -3.2745 -4.3156 34 1 4.0035 -3.9976 -2.7884 35 1 2.5082 -0.2433 -4.1651 36 1 3.7208 -1.1601 -5.0909 37 1 2.0080 -1.6413 -5.1470 38 1 0.2153 -3.0554 -0.4461 39 1 -0.7145 -3.8763 -1.7456 40 1 0.0793 -6.0561 -1.0924 41 1 0.0029 -5.2571 0.5139 42 1 2.3470 -6.2972 -0.5844 43 1 2.3125 -4.9775 0.6153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811742627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:29 Heat of formation + Delta-G solvation = -26.740548 kcal Electronic energy + Delta-G solvation = -24331.177527 eV Core-core repulsion = 20992.350760 eV Total energy + Delta-G solvation = -3338.826767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88462 -38.68566 -35.96833 -35.48527 -32.60420 -32.05743 -30.79167 -29.83682 -27.23764 -26.86272 -25.83607 -24.46039 -22.42931 -21.61166 -21.02729 -20.36277 -17.32946 -17.13363 -16.77607 -16.11215 -15.76806 -15.58751 -15.11949 -14.61330 -14.28935 -13.80007 -13.58019 -13.30559 -13.19043 -12.98014 -12.71117 -12.29799 -12.14066 -12.04121 -11.76669 -11.71270 -11.62102 -11.33725 -11.24471 -10.97444 -10.87475 -10.82193 -10.58345 -10.46005 -10.22904 -9.98248 -9.93066 -9.47315 -9.01905 -8.60275 -8.04125 -6.90276 -5.80104 -3.27028 3.26627 3.36807 3.45528 3.52454 3.66487 3.79368 4.37905 4.45710 4.50453 4.61253 4.82787 4.96013 5.09171 5.19216 5.23932 5.37059 5.42146 5.48817 5.56957 5.63657 5.69846 5.74878 5.79536 5.85545 5.88477 5.92090 6.02973 6.04806 6.11902 6.19256 6.31027 6.48984 6.56643 6.61063 7.07925 7.19978 7.41214 7.50285 7.61114 7.85028 8.33866 9.04289 9.17972 9.77983 10.24783 11.25613 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.006417 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.771838 B = 4362.295609 C = 5246.623369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.587 5.587 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.008 3.992 6 N -0.905 5.905 7 Si 0.903 3.097 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.288 1.288 11 C 0.364 3.636 12 N -0.609 5.609 13 C 0.539 3.461 14 O -0.520 6.520 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.126 4.126 18 C 0.130 3.870 19 H 0.101 0.899 20 C 0.084 3.916 21 H 0.080 0.920 22 C -0.155 4.155 23 C -0.153 4.153 24 C 0.050 3.950 25 O -0.362 6.362 26 H 0.031 0.969 27 H 0.045 0.955 28 H -0.003 1.003 29 H 0.253 0.747 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -16.161 -8.172 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.310 5.310 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.190 4.190 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.215 1.215 11 C 0.157 3.843 12 N -0.350 5.350 13 C 0.324 3.676 14 O -0.395 6.395 15 C -0.125 4.125 16 C -0.181 4.181 17 C -0.184 4.184 18 C 0.025 3.975 19 H 0.119 0.881 20 C 0.026 3.974 21 H 0.097 0.903 22 C -0.192 4.192 23 C -0.191 4.191 24 C -0.027 4.027 25 O -0.282 6.282 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.901 -15.608 -7.708 17.511 hybrid contribution -0.184 0.978 0.006 0.995 sum -2.084 -14.630 -7.702 16.665 Atomic orbital electron populations 1.20848 0.82734 0.95983 0.99047 1.44554 1.02131 1.01519 1.82769 1.19291 0.99142 0.85688 1.34834 0.91141 1.25016 0.97842 0.98704 0.97486 1.70074 1.21004 1.27545 1.36292 0.86205 0.78641 0.84019 0.77891 1.20056 1.21525 1.21513 1.20699 0.95934 0.87197 0.80509 1.52622 1.13431 1.55195 1.13718 1.21853 0.83575 0.77095 0.85078 1.90650 1.22197 1.47003 1.79605 1.22986 0.95429 0.97784 0.96310 1.21613 0.99767 0.94312 1.02445 1.21532 1.02016 0.99060 0.95786 1.22631 0.96123 0.91291 0.87446 0.88099 1.23093 0.86394 0.92999 0.94956 0.90251 1.23408 0.98380 0.97955 0.99470 1.23103 0.96338 0.97761 1.01903 1.23081 0.92876 0.93588 0.93171 1.88507 1.30260 1.59691 1.49696 0.95057 0.93656 0.98487 0.93708 0.92284 0.91101 0.92276 0.92450 0.90306 0.91783 0.91842 0.91832 0.89439 0.89958 0.90862 0.90161 0.91890 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 8.97 59.84 0.54 4.27 16 2 N -0.59 -14.70 3.16 -184.86 -0.58 -15.28 16 3 C -0.26 -7.40 9.65 -15.06 -0.15 -7.54 16 4 H 0.07 2.12 7.87 -52.49 -0.41 1.71 16 5 C 0.01 0.23 5.05 -17.43 -0.09 0.14 16 6 N -0.90 -26.29 10.87 55.49 0.60 -25.69 16 7 Si 0.90 22.65 29.58 -169.99 -5.03 17.63 16 8 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 C 0.36 7.76 7.11 -63.75 -0.45 7.31 16 12 N -0.61 -11.69 2.92 -174.12 -0.51 -12.20 16 13 C 0.54 11.10 8.58 -10.27 -0.09 11.01 16 14 O -0.52 -12.85 18.03 5.56 0.10 -12.75 16 15 C -0.12 -1.83 1.42 -154.92 -0.22 -2.05 16 16 C -0.12 -1.58 7.94 37.16 0.29 -1.28 16 17 C -0.13 -1.70 9.14 37.16 0.34 -1.36 16 18 C 0.13 1.93 3.99 -67.23 -0.27 1.66 16 19 H 0.10 1.46 8.01 -51.93 -0.42 1.05 16 20 C 0.08 1.01 2.74 -25.70 -0.07 0.94 16 21 H 0.08 0.79 7.38 -51.93 -0.38 0.41 16 22 C -0.15 -1.69 6.57 -24.40 -0.16 -1.85 16 23 C -0.15 -1.41 7.03 -24.71 -0.17 -1.59 16 24 C 0.05 0.54 7.79 37.88 0.30 0.83 16 25 O -0.36 -4.88 8.18 -35.23 -0.29 -5.17 16 26 H 0.03 0.79 7.51 -51.93 -0.39 0.40 16 27 H 0.04 1.16 7.23 -51.93 -0.38 0.79 16 28 H 0.00 -0.07 7.41 -51.93 -0.38 -0.45 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.06 1.12 6.30 -51.93 -0.33 0.80 16 31 H 0.07 1.65 8.07 -51.93 -0.42 1.23 16 32 H 0.06 0.60 7.37 -51.93 -0.38 0.22 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.13 5.98 -51.93 -0.31 0.82 16 35 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.18 5.47 -51.93 -0.28 0.89 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -32.84 340.13 -7.80 -40.64 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.02 Total: -2.80 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -0.20 Total: 10.49 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.49 Total: -53.17 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.19 Total: -17.92 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.84 -7.80 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811742627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.904 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds