Wall clock time and date at job start Tue Mar 31 2020 02:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47060 * 2 1 4 4 C 1.53000 * 109.47158 * 120.00187 * 2 1 3 5 5 N 1.46508 * 109.46922 * 66.30447 * 4 2 1 6 6 C 1.46497 * 119.99839 * 264.59433 * 5 4 2 7 7 C 1.50704 * 109.47233 * 273.33558 * 6 5 4 8 8 H 1.08007 * 119.99682 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00235 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00154 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00168 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47474 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47494 * 119.99948 * 11 9 7 14 14 H 1.48501 * 109.47152 * 239.99959 * 11 9 7 15 15 C 1.34772 * 119.99831 * 84.59748 * 5 4 2 16 16 O 1.21277 * 120.00264 * 5.43535 * 15 5 4 17 17 C 1.50701 * 119.99769 * 185.44070 * 15 5 4 18 18 H 1.08994 * 110.43906 * 30.63151 * 17 15 5 19 19 C 1.54635 * 110.48454 * 153.16905 * 17 15 5 20 20 C 1.54482 * 101.76280 * 93.88342 * 19 17 15 21 21 N 1.46764 * 105.47488 * 25.41297 * 20 19 17 22 22 C 1.46506 * 124.34830 * 162.98753 * 21 20 19 23 23 C 1.34738 * 111.35156 * 343.01644 * 21 20 19 24 24 O 1.21277 * 125.12542 * 180.38500 * 23 21 20 25 25 H 1.08997 * 109.46934 * 59.99951 * 1 2 3 26 26 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47007 * 299.99626 * 1 2 3 28 28 H 1.09000 * 109.47007 * 240.00374 * 2 1 3 29 29 H 1.08997 * 109.46995 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47576 * 300.00132 * 3 2 1 31 31 H 1.09000 * 109.46905 * 60.00311 * 3 2 1 32 32 H 1.08999 * 109.47303 * 306.30743 * 4 2 1 33 33 H 1.08997 * 109.47483 * 186.30185 * 4 2 1 34 34 H 1.08998 * 109.47262 * 33.33691 * 6 5 4 35 35 H 1.09000 * 109.47304 * 153.34126 * 6 5 4 36 36 H 0.96994 * 119.99987 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.96830 * 211.99162 * 19 17 15 38 38 H 1.08990 * 110.97032 * 335.76220 * 19 17 15 39 39 H 1.08999 * 110.24779 * 144.41678 * 20 19 17 40 40 H 1.08999 * 110.24255 * 266.41223 * 20 19 17 41 41 H 1.08996 * 109.47367 * 89.99766 * 22 21 20 42 42 H 1.08994 * 109.46667 * 209.99991 * 22 21 20 43 43 H 1.09001 * 109.46708 * 329.99572 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6795 -2.1394 1.1757 6 6 0.4614 -2.6204 1.8323 7 6 0.7650 -2.9576 3.2694 8 1 1.7652 -2.8263 3.6551 9 6 -0.2340 -3.4338 4.0916 10 7 -1.4519 -3.5942 3.6218 11 14 0.1422 -3.8511 5.8731 12 1 1.5762 -3.5846 6.1518 13 1 -0.6998 -3.0149 6.7659 14 1 -0.1507 -5.2862 6.1178 15 6 2.4684 -3.0013 0.5041 16 8 3.5256 -2.6241 0.0449 17 6 2.0368 -4.4339 0.3237 18 1 0.9498 -4.5011 0.2786 19 6 2.6694 -5.0328 -0.9539 20 6 3.9416 -5.7040 -0.3905 21 7 3.6392 -5.9986 1.0151 22 6 4.3974 -6.9389 1.8443 23 6 2.5745 -5.2942 1.4459 24 8 2.1141 -5.3409 2.5669 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.5875 -0.2768 2.1356 33 1 3.1242 -0.6247 1.3075 34 1 -0.3025 -1.8438 1.7949 35 1 0.0994 -3.5112 1.3188 36 1 -2.1548 -3.9288 4.2004 37 1 2.0077 -5.7706 -1.4078 38 1 2.9249 -4.2491 -1.6669 39 1 4.1532 -6.6259 -0.9321 40 1 4.7895 -5.0224 -0.4591 41 1 5.2091 -6.4101 2.3438 42 1 3.7367 -7.3790 2.5910 43 1 4.8103 -7.7271 1.2147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813425191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:23 Heat of formation + Delta-G solvation = -68.997077 kcal Electronic energy + Delta-G solvation = -24062.802447 eV Core-core repulsion = 20722.143299 eV Total energy + Delta-G solvation = -3340.659147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45997 -38.52477 -36.25307 -35.57296 -33.95950 -32.37856 -32.09971 -27.99052 -27.41646 -26.75189 -26.44171 -25.25333 -22.90875 -21.83857 -20.15233 -19.38097 -18.21968 -16.87150 -16.54309 -16.08652 -15.54145 -15.16720 -15.04719 -14.39761 -14.31803 -13.92192 -13.50559 -13.33315 -12.94323 -12.61140 -12.51563 -12.32953 -12.24729 -12.05415 -11.98187 -11.95720 -11.57359 -11.35077 -11.18594 -10.96855 -10.82656 -10.80781 -10.56823 -10.45421 -10.19370 -9.91702 -9.52406 -9.22474 -9.00708 -8.33476 -8.25719 -7.65798 -5.96001 -3.95917 2.93454 3.29499 3.39019 3.46186 3.50629 3.53702 3.97717 4.57412 4.73371 4.82344 5.06533 5.21457 5.31174 5.34071 5.40512 5.44578 5.48047 5.51099 5.64469 5.69560 5.89603 5.90381 5.94169 5.99187 6.02934 6.05283 6.18253 6.23824 6.30239 6.36656 6.42858 6.62271 6.74630 6.87267 6.91343 7.26008 7.47291 7.58279 7.99217 8.24156 8.34159 8.77305 8.87579 9.07890 9.69142 11.12612 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.009801 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.987950 B = 2856.152464 C = 4980.999853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.584 5.584 6 C 0.233 3.767 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.069 3.931 10 N -0.901 5.901 11 Si 0.897 3.103 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.285 1.285 15 C 0.533 3.467 16 O -0.569 6.569 17 C -0.144 4.144 18 H 0.128 0.872 19 C -0.115 4.115 20 C 0.112 3.888 21 N -0.635 5.635 22 C 0.103 3.897 23 C 0.524 3.476 24 O -0.465 6.465 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 -0.658 -10.035 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.312 5.312 6 C 0.114 3.886 7 C -0.540 4.540 8 H 0.074 0.926 9 C -0.132 4.132 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.320 3.680 16 O -0.450 6.450 17 C -0.169 4.169 18 H 0.146 0.854 19 C -0.153 4.153 20 C -0.012 4.012 21 N -0.373 5.373 22 C -0.039 4.039 23 C 0.309 3.691 24 O -0.335 6.335 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.189 -0.580 -9.487 11.918 hybrid contribution 0.051 -0.425 1.068 1.151 sum 7.240 -1.005 -8.420 11.150 Atomic orbital electron populations 1.21887 0.94951 1.02531 1.00914 1.21484 0.96353 0.95851 0.99245 1.21745 1.00774 0.95945 1.01428 1.21372 1.00134 0.80952 0.97343 1.48217 1.26077 1.07084 1.49844 1.19642 0.80642 0.95553 0.92745 1.21250 0.95760 1.42491 0.94485 0.92579 1.24746 0.94788 0.95051 0.98583 1.69918 1.01194 1.46982 1.36028 0.86445 0.78157 0.77912 0.84857 1.19994 1.21551 1.21125 1.19590 0.83835 0.86159 0.78414 1.90580 1.23248 1.78974 1.52224 1.22077 1.04387 0.94244 0.96182 0.85425 1.22501 0.96145 1.00458 0.96221 1.21967 0.98425 0.99681 0.81092 1.48200 1.31825 1.44472 1.12849 1.21405 0.95914 0.91706 0.94883 1.20252 0.80043 0.80319 0.88526 1.90928 1.59962 1.62907 1.19665 0.93667 0.91806 0.92594 0.91406 0.92857 0.92986 0.92675 0.90116 0.91375 0.94166 0.94542 0.93079 0.89906 0.88745 0.91125 0.90921 0.93216 0.90888 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.39 37.16 0.31 -1.94 16 2 C -0.11 -1.73 3.08 -90.62 -0.28 -2.01 16 3 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 4 C 0.13 2.35 4.84 -4.04 -0.02 2.33 16 5 N -0.58 -12.44 2.22 -175.06 -0.39 -12.83 16 6 C 0.23 5.66 4.31 -5.19 -0.02 5.63 16 7 C -0.50 -13.86 7.42 -34.44 -0.26 -14.11 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 10 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 11 Si 0.90 22.93 29.54 -169.99 -5.02 17.91 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 C 0.53 11.07 6.73 -10.99 -0.07 11.00 16 16 O -0.57 -12.25 15.55 5.56 0.09 -12.16 16 17 C -0.14 -2.70 2.60 -91.78 -0.24 -2.94 16 18 H 0.13 2.45 6.05 -51.93 -0.31 2.13 16 19 C -0.12 -1.58 6.39 -25.09 -0.16 -1.74 16 20 C 0.11 1.48 7.19 -3.12 -0.02 1.45 16 21 N -0.63 -10.43 3.34 -180.19 -0.60 -11.04 16 22 C 0.10 1.39 10.97 59.85 0.66 2.04 16 23 C 0.52 10.85 7.34 -10.72 -0.08 10.77 16 24 O -0.47 -11.78 15.62 5.56 0.09 -11.69 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.10 6.24 -51.93 -0.32 0.78 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 33 H 0.07 1.31 7.52 -51.93 -0.39 0.92 16 34 H 0.04 1.00 6.44 -51.93 -0.33 0.66 16 35 H 0.04 0.93 5.64 -51.93 -0.29 0.63 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.26 7.50 -51.93 -0.39 0.88 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -32.87 345.83 -6.90 -39.77 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.07 Total: -0.67 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 0.06 Total: 10.88 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.25 Total: -49.25 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.87 -6.90 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813425191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.228 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds