Wall clock time and date at job start Tue Mar 31 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99824 * 2 1 4 4 N 1.46493 * 109.47427 * 124.99919 * 3 2 1 5 5 C 1.46494 * 120.00444 * 269.72511 * 4 3 2 6 6 C 1.50694 * 109.47248 * 270.27463 * 5 4 3 7 7 H 1.07999 * 119.99904 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00385 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99650 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47439 * 90.00453 * 10 8 6 12 12 H 1.48504 * 109.47008 * 210.00380 * 10 8 6 13 13 H 1.48496 * 109.47181 * 329.99866 * 10 8 6 14 14 C 1.34784 * 119.99864 * 89.99800 * 4 3 2 15 15 O 1.21279 * 119.99925 * 179.72608 * 14 4 3 16 16 C 1.50700 * 119.99961 * 359.72839 * 14 4 3 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 4 18 18 N 1.46898 * 109.47518 * 179.97438 * 17 16 14 19 19 C 1.47016 * 110.99824 * 293.63647 * 18 17 16 20 20 C 1.53101 * 109.25928 * 177.60314 * 19 18 17 21 21 O 1.43020 * 109.25717 * 56.84624 * 20 19 18 22 22 C 1.43015 * 113.73713 * 301.33419 * 21 20 19 23 23 C 1.47007 * 111.00638 * 169.99751 * 18 17 16 24 24 H 1.08001 * 119.99797 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.99725 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00333 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47046 * 4.99693 * 3 2 1 28 28 H 1.08996 * 109.46984 * 245.00291 * 3 2 1 29 29 H 1.09003 * 109.47006 * 30.27410 * 5 4 3 30 30 H 1.09004 * 109.47665 * 150.27102 * 5 4 3 31 31 H 0.96998 * 120.00151 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.46932 * 300.00223 * 16 14 4 33 33 H 1.08997 * 109.47392 * 59.99562 * 16 14 4 34 34 H 1.09004 * 109.47330 * 299.99977 * 17 16 14 35 35 H 1.09005 * 109.47124 * 59.99773 * 17 16 14 36 36 H 1.09002 * 109.50863 * 297.53682 * 19 18 17 37 37 H 1.08996 * 109.50827 * 57.67069 * 19 18 17 38 38 H 1.08993 * 109.50871 * 296.91436 * 20 19 18 39 39 H 1.08995 * 109.54296 * 176.79982 * 20 19 18 40 40 H 1.08996 * 109.50628 * 298.72979 * 22 21 20 41 41 H 1.09005 * 109.53661 * 178.62563 * 22 21 20 42 42 H 1.09001 * 109.50997 * 302.33115 * 23 18 17 43 43 H 1.09009 * 109.50320 * 62.41163 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5608 1.8706 2.4231 6 6 2.8454 3.3496 2.4715 7 1 3.3034 3.8394 1.6249 8 6 2.5211 4.0777 3.5967 9 7 1.9639 3.4812 4.6278 10 14 2.8733 5.9112 3.6564 11 1 1.6990 6.6580 3.1382 12 1 3.1392 6.3187 5.0594 13 1 4.0617 6.2145 2.8193 14 6 4.2498 0.8663 0.9823 15 8 5.0214 0.8931 1.9176 16 6 4.6952 0.3123 -0.3465 17 6 6.1517 -0.1452 -0.2459 18 7 6.5858 -0.6858 -1.5410 19 6 5.8595 -1.9220 -1.8659 20 6 6.2982 -2.4174 -3.2466 21 8 7.7160 -2.6051 -3.2518 22 6 8.4546 -1.4208 -2.9398 23 6 8.0377 -0.9153 -1.5562 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 1.4910 1.7022 2.5468 30 1 3.1025 1.3699 3.2256 31 1 1.7354 3.9934 5.4192 32 1 4.0660 -0.5361 -0.6157 33 1 4.6087 1.0854 -1.1099 34 1 6.7812 0.7030 0.0235 35 1 6.2377 -0.9185 0.5175 36 1 6.0832 -2.6829 -1.1182 37 1 4.7878 -1.7231 -1.8743 38 1 6.0260 -1.6798 -4.0014 39 1 5.8050 -3.3638 -3.4680 40 1 8.2451 -0.6542 -3.6857 41 1 9.5211 -1.6460 -2.9390 42 1 8.5562 0.0184 -1.3384 43 1 8.2964 -1.6596 -0.8029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816803401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:36 Heat of formation + Delta-G solvation = -54.426501 kcal Electronic energy + Delta-G solvation = -22588.851307 eV Core-core repulsion = 19248.823987 eV Total energy + Delta-G solvation = -3340.027320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83519 -39.00289 -36.16811 -35.58119 -33.23240 -32.09310 -31.55989 -31.03957 -27.96360 -26.68335 -25.39427 -24.21379 -23.41632 -21.71894 -20.48212 -19.93637 -18.33886 -17.00489 -16.51136 -16.32562 -15.90201 -15.62881 -15.54035 -15.23964 -14.85274 -14.60431 -14.37598 -14.08567 -13.78967 -13.28285 -12.77806 -12.51918 -12.35923 -12.07222 -12.04176 -11.67225 -11.58561 -11.41632 -11.27374 -11.07995 -10.89890 -10.86479 -10.62319 -10.57437 -10.18836 -9.86814 -9.64282 -9.20199 -8.91409 -8.51796 -8.43562 -7.69313 -6.04376 -4.09157 2.43343 3.29666 3.35921 3.38287 3.44274 3.50155 3.68671 4.12987 4.45216 4.67958 4.80683 4.82273 4.95632 5.06037 5.10431 5.20710 5.25028 5.29633 5.33197 5.36669 5.39572 5.42897 5.58482 5.63216 5.64527 5.76225 5.80325 5.99583 6.05313 6.07258 6.20311 6.77224 6.81068 6.84605 6.89859 6.93129 7.08868 7.44814 7.54872 7.92102 8.23560 8.40676 8.89881 9.08345 9.55933 11.03752 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.003894 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.783813 B = 7188.029540 C = 8157.972230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.506 3.494 15 O -0.543 6.543 16 C -0.136 4.136 17 C 0.072 3.928 18 N -0.539 5.539 19 C 0.012 3.988 20 C 0.064 3.936 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.017 3.983 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.849 -10.437 -16.343 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.324 5.324 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.292 3.708 15 O -0.421 6.421 16 C -0.176 4.176 17 C -0.055 4.055 18 N -0.264 5.264 19 C -0.116 4.116 20 C -0.013 4.013 21 O -0.307 6.307 22 C -0.012 4.012 23 C -0.111 4.111 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.170 -10.196 -16.031 19.690 hybrid contribution -0.001 0.704 0.881 1.128 sum 5.169 -9.492 -15.150 18.610 Atomic orbital electron populations 1.23819 0.95856 1.01757 1.00629 1.23415 0.96375 0.99002 0.99868 1.20584 0.93135 0.95251 0.89834 1.48222 1.10550 1.60023 1.13638 1.19262 0.95363 0.93675 0.78900 1.21442 1.40559 0.93291 1.01246 0.92450 1.24937 0.95079 0.98779 0.95310 1.69935 1.42151 1.36127 1.05153 0.86501 0.78604 0.84999 0.77347 1.20641 1.21097 1.19881 1.20297 0.82350 0.78637 0.89492 1.90669 1.52468 1.56722 1.42286 1.21664 0.96714 1.02095 0.97164 1.21832 0.95652 0.99996 0.88052 1.62207 1.04359 1.27657 1.32204 1.22860 0.99933 0.91251 0.97563 1.22668 0.81382 1.01387 0.95831 1.87968 1.17880 1.33939 1.90927 1.22664 0.96084 0.87531 0.94961 1.22768 0.89001 1.01459 0.97857 0.88266 0.88817 0.87940 0.89501 0.90648 0.95039 0.93959 0.92734 0.89807 0.88659 0.89660 0.93820 0.93887 0.89294 0.92223 0.88576 0.92233 0.88552 0.89404 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.32 9.74 -36.03 -0.35 -2.67 16 3 C 0.14 2.17 5.65 -5.20 -0.03 2.14 16 4 N -0.59 -12.41 2.44 -176.44 -0.43 -12.85 16 5 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 6 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.51 10.33 7.67 -10.98 -0.08 10.25 16 15 O -0.54 -13.55 15.56 5.56 0.09 -13.46 16 16 C -0.14 -1.98 4.20 -27.89 -0.12 -2.09 16 17 C 0.07 1.03 4.25 -3.83 -0.02 1.01 16 18 N -0.54 -6.38 4.73 -234.31 -1.11 -7.48 16 19 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 20 C 0.06 0.59 7.01 37.21 0.26 0.85 16 21 O -0.39 -4.28 10.83 -35.23 -0.38 -4.66 16 22 C 0.06 0.60 7.01 37.20 0.26 0.86 16 23 C 0.02 0.18 5.64 -3.72 -0.02 0.16 16 24 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16 25 H 0.09 1.02 8.06 -52.48 -0.42 0.60 16 26 H 0.10 1.32 7.81 -52.49 -0.41 0.91 16 27 H 0.09 1.46 7.72 -51.93 -0.40 1.05 16 28 H 0.08 1.00 6.44 -51.93 -0.33 0.67 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.08 1.04 6.13 -51.93 -0.32 0.72 16 33 H 0.10 1.29 7.39 -51.93 -0.38 0.90 16 34 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 35 H 0.04 0.67 8.08 -51.93 -0.42 0.26 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.84 6.38 -51.93 -0.33 0.50 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -33.28 351.02 -8.13 -41.41 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.15 Total: -0.71 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.15 Total: 1.55 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.80 Total: -46.29 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.29 Total: -18.12 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.28 -8.13 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.016 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds