Wall clock time and date at job start Tue Mar 31 2020 02:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47302 * 2 1 4 4 C 1.53002 * 109.46749 * 119.99571 * 2 1 3 5 5 H 1.09003 * 109.47397 * 54.83043 * 4 2 1 6 6 N 1.46495 * 109.47411 * 294.83198 * 4 2 1 7 7 C 1.34781 * 120.00449 * 84.99888 * 6 4 2 8 8 O 1.21284 * 119.99313 * 0.02562 * 7 6 4 9 9 C 1.50700 * 109.47193 * 174.82926 * 4 2 1 10 10 O 1.21281 * 119.99718 * 98.25710 * 9 4 2 11 11 N 1.34772 * 120.00048 * 278.25911 * 9 4 2 12 12 C 1.46928 * 120.63099 * 185.11078 * 11 9 4 13 13 C 1.53618 * 108.54825 * 126.36653 * 12 11 9 14 14 C 1.53052 * 109.24002 * 54.85581 * 13 12 11 15 15 C 1.50697 * 109.44850 * 178.49957 * 14 13 12 16 16 H 1.07997 * 120.00220 * 120.05670 * 15 14 13 17 17 C 1.37879 * 119.99925 * 300.06260 * 15 14 13 18 18 N 1.31513 * 119.99727 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00066 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46943 * 90.00468 * 19 17 15 21 21 H 1.48497 * 109.47238 * 210.00103 * 19 17 15 22 22 H 1.48491 * 109.47204 * 330.00331 * 19 17 15 23 23 C 1.53041 * 109.53450 * 298.51395 * 14 13 12 24 24 C 1.46924 * 120.63503 * 5.38850 * 11 9 4 25 25 H 1.09005 * 109.47362 * 300.00475 * 1 2 3 26 26 H 1.09000 * 109.46927 * 60.00308 * 1 2 3 27 27 H 1.08999 * 109.47678 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47562 * 239.99322 * 2 1 3 29 29 H 1.08997 * 109.47252 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47271 * 299.99354 * 3 2 1 31 31 H 1.09004 * 109.47709 * 59.99824 * 3 2 1 32 32 H 0.97003 * 120.00258 * 265.00414 * 6 4 2 33 33 H 1.07997 * 120.00470 * 179.73075 * 7 6 4 34 34 H 1.09010 * 109.58663 * 246.20248 * 12 11 9 35 35 H 1.09004 * 109.58630 * 6.62397 * 12 11 9 36 36 H 1.09005 * 109.63515 * 294.86828 * 13 12 11 37 37 H 1.08994 * 109.43837 * 174.72404 * 13 12 11 38 38 H 1.09001 * 109.45760 * 58.53530 * 14 13 12 39 39 H 0.97002 * 120.00028 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.49866 * 301.40934 * 23 14 13 41 41 H 1.09006 * 109.49229 * 181.32052 * 23 14 13 42 42 H 1.09004 * 109.58454 * 353.36971 * 24 11 9 43 43 H 1.08996 * 109.58903 * 113.65023 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6029 -1.7187 1.2969 6 7 1.6558 0.0375 2.4422 7 6 0.4388 -0.1426 2.9926 8 8 -0.3382 -0.9333 2.5005 9 6 3.5415 -0.8331 1.1871 10 8 4.2341 -0.0374 1.7854 11 7 4.1145 -1.8173 0.4665 12 6 5.5713 -2.0081 0.4855 13 6 5.8681 -3.4680 0.8602 14 6 5.1254 -4.3970 -0.1030 15 6 5.4427 -5.8303 0.2374 16 1 4.6488 -6.5077 0.5153 17 6 6.7464 -6.2768 0.1943 18 7 7.0232 -7.5277 0.4909 19 14 8.1194 -5.1052 -0.2869 20 1 8.6500 -4.4382 0.9292 21 1 9.2093 -5.8654 -0.9498 22 1 7.5907 -4.0806 -1.2226 23 6 3.6179 -4.1647 0.0222 24 6 3.2952 -2.7162 -0.3576 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 2.2773 0.6697 2.8359 33 1 0.1572 0.4135 3.8745 34 1 5.9812 -1.7905 -0.5009 35 1 6.0175 -1.3419 1.2239 36 1 5.5345 -3.6594 1.8801 37 1 6.9402 -3.6503 0.7874 38 1 5.4414 -4.1880 -1.1251 39 1 7.9404 -7.8420 0.4602 40 1 3.3055 -4.3497 1.0501 41 1 3.0886 -4.8431 -0.6470 42 1 2.2389 -2.5175 -0.1756 43 1 3.5212 -2.5535 -1.4114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860706016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:31 Heat of formation + Delta-G solvation = -75.030866 kcal Electronic energy + Delta-G solvation = -23732.004020 eV Core-core repulsion = 20391.083228 eV Total energy + Delta-G solvation = -3340.920792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82251 -39.15430 -37.29224 -36.04275 -33.72706 -33.11191 -31.55423 -30.78644 -28.05939 -27.26820 -26.20560 -23.15565 -22.80444 -22.13934 -20.67731 -19.69304 -19.09799 -18.04456 -16.98000 -16.49692 -16.31540 -15.90282 -15.29704 -14.83533 -14.58510 -14.22420 -13.79171 -13.71737 -13.51227 -13.36215 -13.15127 -12.62359 -12.55768 -12.28580 -12.25287 -12.05286 -11.95787 -11.52098 -11.17581 -11.06121 -11.00734 -10.80314 -10.23971 -10.11994 -10.05932 -9.84009 -9.79765 -9.36506 -9.15375 -9.12804 -8.59765 -8.31566 -6.12891 -4.12655 2.48214 2.65091 2.90051 3.21305 3.30950 3.33632 3.41351 4.34526 4.36170 4.61743 4.77542 4.83704 5.01259 5.15664 5.17031 5.36266 5.44285 5.52331 5.55365 5.61066 5.73456 5.74802 5.75421 5.82077 5.89460 5.91696 6.08456 6.12515 6.20194 6.23755 6.26408 6.49526 6.58509 6.71581 6.79451 7.10364 7.31872 7.41096 7.55182 7.69087 8.02190 8.17670 8.45453 8.91042 9.49011 11.00391 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.004624 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.640602 B = 6053.405345 C = 6334.687655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C -0.146 4.146 4 C 0.125 3.875 5 H 0.112 0.888 6 N -0.715 5.715 7 C 0.491 3.509 8 O -0.549 6.549 9 C 0.513 3.487 10 O -0.550 6.550 11 N -0.594 5.594 12 C 0.108 3.892 13 C -0.134 4.134 14 C 0.015 3.985 15 C -0.515 4.515 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.265 1.265 23 C -0.115 4.115 24 C 0.097 3.903 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.410 0.590 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 17.633 0.125 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.203 4.203 4 C 0.016 3.984 5 H 0.130 0.870 6 N -0.372 5.372 7 C 0.259 3.741 8 O -0.424 6.424 9 C 0.300 3.700 10 O -0.429 6.429 11 N -0.326 5.326 12 C -0.014 4.014 13 C -0.172 4.172 14 C -0.004 4.004 15 C -0.553 4.553 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.190 1.190 23 C -0.153 4.153 24 C -0.025 4.025 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.247 0.753 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.520 17.321 0.112 20.266 hybrid contribution 1.306 0.679 0.005 1.472 sum -9.214 18.000 0.118 20.222 Atomic orbital electron populations 1.21864 0.93375 1.02737 1.01414 1.21489 0.97340 0.97052 0.96281 1.21810 1.01431 0.95290 1.01780 1.20943 0.92054 0.98250 0.87140 0.86987 1.46351 1.17865 1.43952 1.28997 1.22613 0.80501 0.83770 0.87174 1.90734 1.50944 1.36834 1.63929 1.20431 0.89857 0.80780 0.78908 1.90640 1.64449 1.41644 1.46153 1.48098 1.08444 1.30592 1.45485 1.21900 0.78781 0.99012 1.01731 1.22458 1.00570 0.92291 1.01881 1.19137 0.90926 0.95555 0.94815 1.21023 0.94222 0.93363 1.46646 0.90795 1.25035 0.98707 0.94935 0.94544 1.69895 1.19814 1.15228 1.48832 0.86881 0.81869 0.80870 0.78827 1.20519 1.22420 1.19005 1.21843 0.99298 0.92479 1.01663 1.22086 0.94309 0.91511 0.94626 0.92315 0.93147 0.91848 0.89908 0.92311 0.92561 0.92428 0.75293 0.85077 0.91896 0.89888 0.91676 0.92367 0.95322 0.92610 0.92116 0.91008 0.90374 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 7.80 37.16 0.29 -1.12 16 2 C -0.10 -1.07 2.44 -90.62 -0.22 -1.29 16 3 C -0.15 -1.45 8.79 37.15 0.33 -1.13 16 4 C 0.12 1.51 1.49 -69.08 -0.10 1.41 16 5 H 0.11 1.49 6.14 -51.93 -0.32 1.17 16 6 N -0.72 -7.32 4.02 -59.27 -0.24 -7.55 16 7 C 0.49 4.76 11.22 54.06 0.61 5.37 16 8 O -0.55 -7.50 14.31 5.55 0.08 -7.42 16 9 C 0.51 7.61 6.04 -10.99 -0.07 7.54 16 10 O -0.55 -9.23 15.02 5.56 0.08 -9.15 16 11 N -0.59 -9.30 2.97 -172.50 -0.51 -9.81 16 12 C 0.11 1.87 6.44 -3.49 -0.02 1.85 16 13 C -0.13 -2.76 4.86 -26.38 -0.13 -2.89 16 14 C 0.01 0.32 1.66 -91.73 -0.15 0.17 16 15 C -0.51 -13.85 9.14 -34.44 -0.31 -14.16 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 18 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 19 Si 0.89 21.22 24.38 -169.99 -4.14 17.08 16 20 H -0.28 -6.53 6.86 56.52 0.39 -6.14 16 21 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.27 -5.97 6.53 56.52 0.37 -5.60 16 23 C -0.11 -2.05 5.30 -26.61 -0.14 -2.19 16 24 C 0.10 1.39 5.61 -3.71 -0.02 1.37 16 25 H 0.06 0.63 5.64 -51.93 -0.29 0.34 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.73 7.86 -51.93 -0.41 0.32 16 28 H 0.08 0.86 7.01 -51.93 -0.36 0.49 16 29 H 0.06 0.68 7.11 -51.93 -0.37 0.32 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 32 H 0.41 3.84 7.86 -40.82 -0.32 3.51 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.08 1.44 7.04 -51.93 -0.37 1.08 16 36 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.06 1.28 3.24 -51.93 -0.17 1.11 16 38 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.08 0.94 5.02 -51.93 -0.26 0.68 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -31.99 324.32 -5.73 -37.72 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.61 Total: 3.76 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.04 Total: -3.24 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.02 Total: -43.64 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.16 Total: -16.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.99 -5.73 -37.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860706016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.312 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds