Wall clock time and date at job start Tue Mar 31 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47060 * 2 1 4 4 C 1.52998 * 109.47491 * 120.00594 * 2 1 3 5 5 N 1.46497 * 109.47086 * 174.36143 * 4 2 1 6 6 C 1.46506 * 120.00051 * 275.56766 * 5 4 2 7 7 C 1.50695 * 109.47086 * 264.33945 * 6 5 4 8 8 H 1.07998 * 120.00454 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99863 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00313 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99834 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46828 * 90.00540 * 11 9 7 13 13 H 1.48497 * 109.47027 * 210.00296 * 11 9 7 14 14 H 1.48501 * 109.47110 * 330.00311 * 11 9 7 15 15 C 1.34773 * 120.00138 * 95.56927 * 5 4 2 16 16 O 1.21285 * 119.99772 * 4.42260 * 15 5 4 17 17 C 1.50697 * 120.00172 * 184.41481 * 15 5 4 18 18 H 1.09001 * 109.40151 * 312.83289 * 17 15 5 19 19 C 1.53067 * 109.40416 * 193.00289 * 17 15 5 20 20 C 1.53129 * 108.54001 * 191.00309 * 19 17 15 21 21 C 1.52921 * 108.65087 * 67.53992 * 20 19 17 22 22 N 1.45757 * 110.48945 * 309.26729 * 21 20 19 23 23 C 1.33352 * 124.10356 * 19.09927 * 22 21 20 24 24 O 1.21275 * 118.24652 * 177.75133 * 23 22 21 25 25 H 1.09003 * 109.46770 * 299.99318 * 1 2 3 26 26 H 1.08997 * 109.47293 * 59.99516 * 1 2 3 27 27 H 1.09004 * 109.46845 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46770 * 240.00682 * 2 1 3 29 29 H 1.08999 * 109.46621 * 65.92267 * 3 2 1 30 30 H 1.08998 * 109.47072 * 185.91048 * 3 2 1 31 31 H 1.08997 * 109.47150 * 305.92053 * 3 2 1 32 32 H 1.09003 * 109.46811 * 54.36293 * 4 2 1 33 33 H 1.08997 * 109.46842 * 294.36072 * 4 2 1 34 34 H 1.09003 * 109.47026 * 24.34092 * 6 5 4 35 35 H 1.08994 * 109.46907 * 144.33620 * 6 5 4 36 36 H 0.96994 * 120.00500 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.67034 * 310.79354 * 19 17 15 38 38 H 1.08999 * 109.67696 * 71.32320 * 19 17 15 39 39 H 1.09002 * 109.59551 * 307.80378 * 20 19 17 40 40 H 1.09005 * 109.76832 * 187.38054 * 20 19 17 41 41 H 1.09005 * 109.29877 * 188.95743 * 21 20 19 42 42 H 1.08998 * 109.30164 * 69.58592 * 21 20 19 43 43 H 0.96992 * 117.94770 * 199.07918 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.4988 -0.8399 1.1831 6 6 4.1110 -1.9501 0.4489 7 6 4.4378 -3.0664 1.4070 8 1 4.2124 -2.9596 2.4578 9 6 5.0254 -4.2239 0.9423 10 7 5.3111 -5.1980 1.7784 11 14 5.4159 -4.4085 -0.8752 12 1 6.7859 -3.9011 -1.1411 13 1 5.3365 -5.8418 -1.2554 14 1 4.4358 -3.6295 -1.6737 15 6 4.2776 0.0722 1.7978 16 8 3.7727 0.9449 2.4720 17 6 5.7757 0.0078 1.6475 18 1 6.1122 -1.0161 1.8103 19 6 6.4304 0.9285 2.6803 20 6 7.9168 1.0645 2.3384 21 6 8.0477 1.8331 1.0228 22 7 7.1910 1.2448 0.0008 23 6 6.1572 0.4440 0.2620 24 8 5.4896 0.0465 -0.6691 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.7658 1.9247 0.9383 30 1 3.1249 1.4443 -0.1058 31 1 1.5927 1.9860 -0.8322 32 1 1.5967 -1.7158 1.3009 33 1 1.7616 -0.1526 2.1362 34 1 3.4153 -2.3127 -0.3079 35 1 5.0257 -1.6060 -0.0336 36 1 5.7242 -6.0124 1.4515 37 1 5.9559 1.9094 2.6504 38 1 6.3226 0.4984 3.6760 39 1 8.3588 0.0741 2.2288 40 1 8.4295 1.6080 3.1321 41 1 9.0843 1.7990 0.6873 42 1 7.7578 2.8716 1.1820 43 1 7.3849 1.4488 -0.9274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865027549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:14 Heat of formation + Delta-G solvation = -82.422771 kcal Electronic energy + Delta-G solvation = -24306.416695 eV Core-core repulsion = 20965.175366 eV Total energy + Delta-G solvation = -3341.241329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.64841 -38.61301 -36.51229 -35.79431 -34.04362 -32.69081 -32.21662 -29.73087 -28.00624 -26.77338 -26.10721 -24.15799 -22.57095 -22.43388 -20.20851 -19.18356 -18.05585 -17.20187 -17.00888 -16.64181 -15.96972 -15.55662 -14.77550 -14.56656 -14.26233 -14.03915 -13.90481 -13.62848 -13.46706 -13.14463 -12.62327 -12.58194 -12.20640 -11.92323 -11.84766 -11.65965 -11.48659 -11.19341 -11.13094 -10.95341 -10.86465 -10.67870 -10.53534 -10.44271 -10.16711 -10.08177 -9.62007 -9.27328 -9.05105 -8.94143 -8.59404 -7.52859 -6.14950 -4.14396 2.81486 3.14830 3.25981 3.33525 3.41654 3.61071 3.95221 4.36214 4.74835 4.81801 4.84884 4.95786 5.17843 5.26763 5.31648 5.36895 5.37924 5.53809 5.64761 5.70016 5.85765 5.92795 5.96262 6.03047 6.08372 6.19958 6.20384 6.32480 6.38352 6.42458 6.43871 6.67226 6.73745 6.80570 6.88866 7.14099 7.41337 7.52912 7.58608 8.24384 8.43329 8.49677 8.88465 8.98378 9.46732 10.97467 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.009576 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.170928 B = 2923.392386 C = 4452.588812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.134 4.134 4 C 0.122 3.878 5 N -0.570 5.570 6 C 0.191 3.809 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.895 5.895 11 Si 0.870 3.130 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.541 3.459 16 O -0.568 6.568 17 C -0.129 4.129 18 H 0.145 0.855 19 C -0.104 4.104 20 C -0.139 4.139 21 C 0.111 3.889 22 N -0.722 5.722 23 C 0.531 3.469 24 O -0.529 6.529 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.265 0.735 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 13.294 -2.275 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.297 5.297 6 C 0.070 3.930 7 C -0.580 4.580 8 H 0.094 0.906 9 C -0.127 4.127 10 N -0.533 5.533 11 Si 0.696 3.304 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.327 3.673 16 O -0.449 6.449 17 C -0.153 4.153 18 H 0.162 0.838 19 C -0.142 4.142 20 C -0.177 4.177 21 C -0.013 4.013 22 N -0.376 5.376 23 C 0.318 3.682 24 O -0.406 6.406 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.443 13.254 -2.176 13.652 hybrid contribution 0.533 -0.436 -1.293 1.465 sum 2.976 12.818 -3.469 13.609 Atomic orbital electron populations 1.21756 0.95268 1.01550 1.01323 1.21491 0.95125 0.96986 0.99527 1.21715 1.01259 0.95516 1.00664 1.21433 0.80672 1.00573 0.97487 1.47677 1.05380 1.25998 1.50637 1.20264 0.95893 0.84387 0.92426 1.21535 1.40871 0.99342 0.96285 0.90614 1.24830 0.94969 0.95463 0.97411 1.69900 1.42409 1.06317 1.34653 0.86926 0.79746 0.77459 0.86226 1.20063 1.21133 1.18577 1.19489 0.87479 0.81202 0.79126 1.90586 1.75192 1.37269 1.41869 1.21452 0.95794 1.04891 0.93123 0.83760 1.21453 0.93697 1.00434 0.98655 1.21886 0.97544 1.01706 0.96530 1.21375 0.94135 0.96979 0.88810 1.45409 1.31383 1.50210 1.10568 1.19687 0.79750 0.77741 0.91034 1.90736 1.50648 1.53671 1.45510 0.92803 0.93010 0.92658 0.91077 0.92690 0.92821 0.93975 0.90640 0.90470 0.95283 0.91689 0.92529 0.90196 0.90164 0.90568 0.89597 0.90779 0.91823 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 2 C -0.11 -1.91 3.12 -90.62 -0.28 -2.19 16 3 C -0.13 -2.30 8.16 37.16 0.30 -1.99 16 4 C 0.12 2.37 4.94 -4.04 -0.02 2.35 16 5 N -0.57 -12.50 2.16 -175.06 -0.38 -12.88 16 6 C 0.19 4.63 3.39 -5.19 -0.02 4.61 16 7 C -0.54 -14.83 9.18 -34.44 -0.32 -15.14 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 10 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 11 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 15 C 0.54 11.45 5.31 -10.99 -0.06 11.39 16 16 O -0.57 -12.47 14.58 5.55 0.08 -12.38 16 17 C -0.13 -2.38 2.00 -93.14 -0.19 -2.56 16 18 H 0.15 2.94 6.91 -51.93 -0.36 2.58 16 19 C -0.10 -1.51 4.91 -26.63 -0.13 -1.64 16 20 C -0.14 -1.47 6.02 -26.71 -0.16 -1.63 16 21 C 0.11 1.07 7.17 -4.48 -0.03 1.03 16 22 N -0.72 -9.47 5.45 -61.38 -0.33 -9.80 16 23 C 0.53 9.45 7.04 -11.87 -0.08 9.37 16 24 O -0.53 -11.15 13.92 5.56 0.08 -11.08 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 30 H 0.05 1.05 7.05 -51.93 -0.37 0.68 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 33 H 0.08 1.50 7.21 -51.93 -0.37 1.13 16 34 H 0.03 0.72 7.09 -51.93 -0.37 0.35 16 35 H 0.07 1.60 3.53 -51.93 -0.18 1.42 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.08 1.19 7.53 -51.93 -0.39 0.80 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.40 4.57 8.80 -40.82 -0.36 4.21 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -32.49 336.29 -7.18 -39.67 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.06 Total: 6.50 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.74 Total: 4.03 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.06 Total: -48.40 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.16 Total: -23.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.49 -7.18 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.754 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds