Wall clock time and date at job start Tue Mar 31 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21605 * 120.00197 * 359.97438 * 14 13 3 16 16 C 1.47098 * 119.99756 * 179.97438 * 14 13 3 17 17 C 1.32989 * 120.00164 * 180.02562 * 16 14 13 18 18 C 1.50702 * 120.00551 * 179.97438 * 17 16 14 19 19 N 1.46898 * 109.47374 * 124.99513 * 18 17 16 20 20 C 1.47019 * 111.00325 * 293.64118 * 19 18 17 21 21 C 1.53093 * 109.25993 * 177.60433 * 20 19 18 22 22 O 1.43016 * 109.25580 * 56.84746 * 21 20 19 23 23 C 1.43015 * 113.73866 * 301.32559 * 22 21 20 24 24 C 1.47010 * 111.00392 * 170.00122 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.08002 * 119.99994 * 359.97438 * 16 14 13 33 33 H 1.08002 * 119.99842 * 359.97438 * 17 16 14 34 34 H 1.08994 * 109.47227 * 244.99925 * 18 17 16 35 35 H 1.09007 * 109.46765 * 5.00275 * 18 17 16 36 36 H 1.08995 * 109.50264 * 297.53964 * 20 19 18 37 37 H 1.08998 * 109.50709 * 57.66755 * 20 19 18 38 38 H 1.09000 * 109.50868 * 296.91575 * 21 20 19 39 39 H 1.08998 * 109.54277 * 176.80360 * 21 20 19 40 40 H 1.08992 * 109.51313 * 298.73669 * 23 22 21 41 41 H 1.09010 * 109.54051 * 178.62475 * 23 22 21 42 42 H 1.09002 * 109.50433 * 302.33335 * 24 19 18 43 43 H 1.09004 * 109.50578 * 62.45721 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3417 2.6319 -0.4320 16 6 0.0462 3.3224 -2.6238 17 6 -1.1547 3.8822 -2.7374 18 6 -1.5531 4.5569 -4.0247 19 7 -2.8106 3.9759 -4.5134 20 6 -2.6248 2.5711 -4.9053 21 6 -3.9689 1.9890 -5.3506 22 8 -4.4970 2.7831 -6.4163 23 6 -4.6913 4.1568 -6.0690 24 6 -3.3545 4.7609 -5.6310 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 0.7363 3.3516 -3.4541 33 1 -1.8447 3.8534 -1.9069 34 1 -1.6900 5.6238 -3.8485 35 1 -0.7710 4.4090 -4.7695 36 1 -1.9128 2.5141 -5.7286 37 1 -2.2458 2.0033 -4.0556 38 1 -4.6648 1.9968 -4.5116 39 1 -3.8264 0.9650 -5.6958 40 1 -5.4081 4.2276 -5.2510 41 1 -5.0709 4.7013 -6.9337 42 1 -3.5082 5.7915 -5.3111 43 1 -2.6542 4.7390 -6.4660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867420352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:39 Heat of formation + Delta-G solvation = -65.741598 kcal Electronic energy + Delta-G solvation = -22255.196622 eV Core-core repulsion = 18914.678643 eV Total energy + Delta-G solvation = -3340.517979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83799 -38.96401 -36.51086 -35.08698 -33.04231 -32.32525 -31.42052 -30.86622 -28.50758 -26.98240 -24.87544 -24.28144 -23.04679 -21.32785 -20.61986 -19.45496 -19.14502 -17.45125 -16.70326 -16.40320 -15.82770 -15.50014 -15.32635 -15.23280 -14.86523 -14.42670 -14.39729 -13.96133 -13.39667 -13.08422 -12.83052 -12.63933 -12.24698 -12.02803 -11.70889 -11.61729 -11.53501 -11.39849 -11.22170 -10.99086 -10.84310 -10.82173 -10.32540 -10.16090 -9.97723 -9.63709 -9.25031 -9.06608 -9.00312 -8.69523 -8.49116 -7.78451 -6.11895 -4.21413 1.65601 3.25247 3.30695 3.31749 3.46920 3.63030 4.02855 4.15541 4.38582 4.58426 4.70715 4.73959 4.86430 4.95885 5.06520 5.14157 5.19531 5.26593 5.36282 5.37107 5.44895 5.48885 5.62465 5.69725 5.79011 6.36514 6.40563 6.47519 6.56874 6.65546 6.68612 6.75677 6.86293 7.05771 7.22336 7.38600 7.48029 7.63047 7.75928 7.91755 8.19209 8.70185 8.79009 9.17360 9.46190 10.93425 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035465 B = 0.003007 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.321642 B = 9308.231145 C = 9626.996776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.528 3.472 15 O -0.552 6.552 16 C -0.195 4.195 17 C -0.082 4.082 18 C 0.081 3.919 19 N -0.534 5.534 20 C 0.016 3.984 21 C 0.063 3.937 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.017 3.983 25 H 0.022 0.978 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.533 6.626 -15.981 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.315 3.685 15 O -0.432 6.432 16 C -0.217 4.217 17 C -0.102 4.102 18 C -0.046 4.046 19 N -0.259 5.259 20 C -0.112 4.112 21 C -0.014 4.014 22 O -0.306 6.306 23 C -0.014 4.014 24 C -0.111 4.111 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.135 0.865 33 H 0.150 0.850 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.419 6.418 -14.899 20.430 hybrid contribution 2.142 0.091 -0.638 2.237 sum -10.277 6.509 -15.537 19.733 Atomic orbital electron populations 1.21835 0.98331 0.97969 1.01260 1.21930 0.92633 0.99801 1.02230 1.18781 0.94138 0.89203 0.81083 0.93303 1.21207 0.90766 1.39095 1.06301 0.92180 1.24889 0.98587 0.94808 0.95387 1.69884 1.35214 1.37530 1.09331 0.86519 0.84890 0.78299 0.77446 1.20204 1.21117 1.20176 1.46438 1.14514 1.55547 1.18449 1.18405 0.82893 0.79580 0.87635 1.90753 1.51551 1.60485 1.40450 1.22946 0.98290 1.01969 0.98497 1.23427 0.96115 0.93109 0.97561 1.21261 0.90018 0.99169 0.94148 1.62161 1.27732 1.02288 1.33711 1.22840 0.97934 0.89710 1.00746 1.22693 0.93579 0.94684 0.90404 1.87976 1.84658 1.20079 1.37932 1.22654 0.95541 0.82385 1.00776 1.22803 0.97204 0.98439 0.92679 0.95907 0.94265 0.93168 0.88311 0.95097 0.92501 0.77979 0.86539 0.85040 0.89140 0.93843 0.93831 0.88897 0.92020 0.88287 0.92147 0.88507 0.89478 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -14.15 8.73 -34.44 -0.30 -14.46 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.77 11.29 55.43 0.63 -24.15 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.70 -14.60 5.02 -56.12 -0.28 -14.88 16 14 C 0.53 10.47 6.33 -12.66 -0.08 10.39 16 15 O -0.55 -12.90 13.35 5.27 0.07 -12.83 16 16 C -0.19 -2.85 9.64 -37.81 -0.36 -3.21 16 17 C -0.08 -1.08 8.18 -36.13 -0.30 -1.37 16 18 C 0.08 0.82 5.41 -4.98 -0.03 0.79 16 19 N -0.53 -5.47 4.72 -235.75 -1.11 -6.58 16 20 C 0.02 0.16 5.47 -3.71 -0.02 0.14 16 21 C 0.06 0.61 7.01 37.21 0.26 0.87 16 22 O -0.39 -4.10 10.83 -35.23 -0.38 -4.48 16 23 C 0.06 0.52 7.01 37.21 0.26 0.78 16 24 C 0.02 0.14 5.64 -3.72 -0.02 0.12 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 7.00 8.52 -40.82 -0.35 6.65 16 32 H 0.12 1.39 7.87 -52.49 -0.41 0.98 16 33 H 0.13 2.00 7.49 -52.49 -0.39 1.60 16 34 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.04 0.41 7.80 -51.92 -0.40 0.01 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 1.06 7.23 -51.93 -0.38 0.68 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -30.71 344.21 -8.68 -39.39 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.10 Total: 6.38 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.67 Total: -3.61 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.77 Total: -45.61 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.31 Total: -17.31 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.71 -8.68 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867420352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.355 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds