Wall clock time and date at job start Tue Mar 31 2020 02:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47122 * 2 1 4 4 H 1.08995 * 109.47280 * 304.52198 * 3 2 1 5 5 C 1.50704 * 109.46763 * 184.52226 * 3 2 1 6 6 H 1.08002 * 120.00018 * 245.36823 * 5 3 2 7 7 C 1.37873 * 120.00049 * 65.37273 * 5 3 2 8 8 N 1.31516 * 119.99724 * 9.12890 * 7 5 3 9 9 Si 1.86796 * 120.00346 * 189.12800 * 7 5 3 10 10 H 1.48500 * 109.46993 * 94.99038 * 9 7 5 11 11 H 1.48494 * 109.47324 * 214.99242 * 9 7 5 12 12 H 1.48503 * 109.46963 * 334.99147 * 9 7 5 13 13 N 1.46506 * 109.47193 * 64.52641 * 3 2 1 14 14 C 1.34775 * 119.99883 * 275.00063 * 13 3 2 15 15 O 1.21621 * 119.99807 * 359.97438 * 14 13 3 16 16 C 1.47095 * 120.00078 * 180.02562 * 14 13 3 17 17 C 1.32997 * 120.00383 * 187.24296 * 16 14 13 18 18 C 1.50710 * 119.99384 * 14.59329 * 17 16 14 19 19 N 1.46903 * 109.46821 * 129.28031 * 18 17 16 20 20 C 1.47012 * 111.00126 * 66.31564 * 19 18 17 21 21 C 1.53092 * 109.25463 * 182.35289 * 20 19 18 22 22 O 1.43018 * 109.29474 * 303.21563 * 21 20 19 23 23 C 1.43014 * 113.73620 * 58.64665 * 22 21 20 24 24 C 1.47011 * 110.99807 * 190.00100 * 19 18 17 25 25 H 1.09000 * 109.47008 * 59.99966 * 1 2 3 26 26 H 1.08999 * 109.47228 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47473 * 300.00039 * 1 2 3 28 28 H 1.09001 * 109.46963 * 239.99844 * 2 1 3 29 29 H 1.09000 * 109.47008 * 120.00034 * 2 1 3 30 30 H 0.97005 * 119.99880 * 180.02562 * 8 7 5 31 31 H 0.96994 * 120.00099 * 94.99633 * 13 3 2 32 32 H 1.08000 * 120.00060 * 7.23806 * 16 14 13 33 33 H 1.07998 * 120.00475 * 194.58889 * 17 16 14 34 34 H 1.08993 * 109.47266 * 9.27896 * 18 17 16 35 35 H 1.09000 * 109.46403 * 249.27372 * 18 17 16 36 36 H 1.08996 * 109.47174 * 62.43696 * 20 19 18 37 37 H 1.09003 * 109.54583 * 302.30632 * 20 19 18 38 38 H 1.09011 * 109.50830 * 183.26633 * 21 20 19 39 39 H 1.08994 * 109.51251 * 63.17405 * 21 20 19 40 40 H 1.08998 * 109.50142 * 61.27193 * 23 22 21 41 41 H 1.09002 * 109.50495 * 181.35236 * 23 22 21 42 42 H 1.08999 * 109.50945 * 57.66438 * 24 19 18 43 43 H 1.09004 * 109.50205 * 297.53894 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9791 -0.8467 5 6 3.5429 1.4438 -0.1120 6 1 4.1450 1.8117 0.7056 7 6 4.1491 0.9756 -1.2584 8 7 3.4234 0.6968 -2.3191 9 14 6.0012 0.7372 -1.3049 10 1 6.3269 -0.6748 -0.9805 11 1 6.5083 1.0629 -2.6621 12 1 6.6409 1.6341 -0.3091 13 7 1.6427 2.1009 1.2470 14 6 0.4245 2.6681 1.3511 15 8 -0.3447 2.6337 0.4096 16 6 0.0258 3.3297 2.6028 17 6 -1.2223 3.7619 2.7583 18 6 -2.3036 3.2964 1.8172 19 7 -3.4484 2.8013 2.5934 20 6 -4.0894 3.8926 3.3413 21 6 -5.2374 3.3240 4.1794 22 8 -6.1561 2.6419 3.3214 23 6 -5.5647 1.5722 2.5789 24 6 -4.4206 2.1232 1.7238 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8499 0.3670 -3.1256 31 1 2.2563 2.1286 1.9977 32 1 0.7466 3.4645 3.3957 33 1 -1.4611 4.4463 3.5589 34 1 -1.9172 2.4948 1.1880 35 1 -2.6225 4.1290 1.1902 36 1 -4.4805 4.6316 2.6420 37 1 -3.3579 4.3635 3.9980 38 1 -5.7524 4.1374 4.6908 39 1 -4.8396 2.6254 4.9154 40 1 -5.1758 0.8225 3.2679 41 1 -6.3165 1.1181 1.9333 42 1 -3.9301 1.3029 1.1997 43 1 -4.8177 2.8335 0.9986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867420553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:41 Heat of formation + Delta-G solvation = -54.788888 kcal Electronic energy + Delta-G solvation = -22725.561730 eV Core-core repulsion = 19385.518696 eV Total energy + Delta-G solvation = -3340.043034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77052 -39.09230 -36.26362 -35.05690 -32.85031 -32.35151 -31.30811 -30.98927 -28.24796 -26.98738 -24.59704 -24.11899 -23.10511 -21.66174 -20.48834 -19.55288 -19.12295 -17.04070 -16.62341 -16.22250 -15.93199 -15.30435 -15.22177 -15.09573 -14.80880 -14.38760 -14.13396 -13.95037 -13.61459 -12.99935 -12.71141 -12.48843 -12.25947 -11.99129 -11.64910 -11.52471 -11.46248 -11.36616 -11.19401 -10.98907 -10.79287 -10.71580 -10.35603 -10.18451 -9.79836 -9.69080 -9.22323 -9.10816 -8.72195 -8.47228 -8.36772 -7.80193 -6.15504 -4.20815 1.66595 3.23832 3.31397 3.33031 3.63849 3.77374 4.06699 4.17482 4.40903 4.72858 4.87659 4.91258 5.00969 5.11776 5.17768 5.21646 5.30381 5.42084 5.48195 5.60970 5.65005 5.70118 5.75320 5.85113 6.09768 6.33832 6.38631 6.47892 6.57158 6.72103 6.92008 6.94885 6.98802 7.03259 7.16076 7.31971 7.43608 7.61624 7.71753 7.84746 8.07487 8.68928 8.79003 9.14643 9.45412 10.92642 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038338 B = 0.003348 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.170282 B = 8362.321586 C = 8809.737104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.529 3.471 15 O -0.548 6.548 16 C -0.200 4.200 17 C -0.073 4.073 18 C 0.051 3.949 19 N -0.534 5.534 20 C 0.011 3.989 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.020 3.980 25 H 0.051 0.949 26 H 0.023 0.977 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.139 0.861 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.991 3.948 11.958 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.165 3.835 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.317 3.683 15 O -0.430 6.430 16 C -0.222 4.222 17 C -0.093 4.093 18 C -0.074 4.074 19 N -0.260 5.260 20 C -0.117 4.117 21 C -0.013 4.013 22 O -0.308 6.308 23 C -0.013 4.013 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.495 3.537 11.375 18.000 hybrid contribution 1.481 0.497 -0.163 1.571 sum -12.013 4.034 11.212 16.920 Atomic orbital electron populations 1.21846 0.98077 0.98155 1.01431 1.21838 0.92974 0.99844 1.01164 1.18800 0.94249 0.88894 0.81531 0.92574 1.21210 0.90638 1.43761 1.01964 0.92098 1.24885 0.98469 0.95161 0.94987 1.69988 1.35692 1.43662 1.02300 0.86507 0.85056 0.78528 0.77463 1.20543 1.21161 1.19837 1.46446 1.14847 1.54954 1.18428 1.18492 0.82823 0.79046 0.87915 1.90580 1.50903 1.61252 1.40286 1.22850 0.98110 1.03160 0.98092 1.23339 0.93711 0.94313 0.97963 1.22081 0.88644 1.02537 0.94158 1.62305 1.08218 1.27478 1.27955 1.22857 0.97080 0.93612 0.98198 1.22650 0.90051 0.96526 0.92067 1.87959 1.35874 1.48269 1.58667 1.22687 0.94970 0.89181 0.94447 1.22740 0.93481 0.99604 0.94968 0.93014 0.95837 0.93924 0.90256 0.94739 0.92604 0.77891 0.85835 0.86783 0.84438 0.93861 0.94137 0.89695 0.88764 0.92334 0.92230 0.88485 0.89135 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.50 37.16 0.32 -2.64 16 2 C -0.12 -2.81 5.50 -26.73 -0.15 -2.96 16 3 C 0.27 6.58 2.11 -69.08 -0.15 6.44 16 4 H 0.06 1.62 7.52 -51.93 -0.39 1.23 16 5 C -0.54 -14.05 8.66 -34.44 -0.30 -14.35 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 8 N -0.88 -24.68 12.14 55.43 0.67 -24.01 16 9 Si 0.90 20.49 29.55 -169.99 -5.02 15.47 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.70 -14.19 5.01 -56.12 -0.28 -14.47 16 14 C 0.53 10.11 6.10 -12.67 -0.08 10.04 16 15 O -0.55 -11.88 10.41 5.26 0.05 -11.83 16 16 C -0.20 -2.92 10.01 -37.81 -0.38 -3.30 16 17 C -0.07 -0.97 9.31 -36.12 -0.34 -1.30 16 18 C 0.05 0.74 4.56 -4.97 -0.02 0.72 16 19 N -0.53 -6.81 4.72 -235.76 -1.11 -7.92 16 20 C 0.01 0.11 5.47 -3.72 -0.02 0.09 16 21 C 0.06 0.62 7.01 37.21 0.26 0.88 16 22 O -0.39 -4.54 10.83 -35.23 -0.38 -4.93 16 23 C 0.06 0.67 7.01 37.20 0.26 0.93 16 24 C 0.02 0.24 5.65 -3.72 -0.02 0.22 16 25 H 0.05 1.18 7.82 -51.93 -0.41 0.77 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.88 5.66 -51.93 -0.29 0.59 16 28 H 0.08 2.07 6.79 -51.93 -0.35 1.71 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 6.88 8.51 -40.82 -0.35 6.54 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.19 6.80 -52.49 -0.36 0.83 16 34 H 0.14 2.44 4.77 -52.48 -0.25 2.19 16 35 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.78 6.52 -51.93 -0.34 0.44 16 38 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -29.70 338.84 -8.59 -38.29 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.92 Total: 7.77 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.70 Total: -3.47 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.72 Total: -46.41 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.33 Total: -16.75 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.70 -8.59 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867420553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.496 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds