Wall clock time and date at job start Tue Mar 31 2020 02:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47122 * 2 1 4 4 H 1.08995 * 109.47280 * 304.52198 * 3 2 1 5 5 C 1.50704 * 109.46763 * 184.52226 * 3 2 1 6 6 H 1.08002 * 120.00018 * 245.36823 * 5 3 2 7 7 C 1.37873 * 120.00049 * 65.37273 * 5 3 2 8 8 N 1.31516 * 119.99724 * 9.12890 * 7 5 3 9 9 Si 1.86796 * 120.00346 * 189.12800 * 7 5 3 10 10 H 1.48500 * 109.46993 * 94.99038 * 9 7 5 11 11 H 1.48494 * 109.47324 * 214.99242 * 9 7 5 12 12 H 1.48503 * 109.46963 * 334.99147 * 9 7 5 13 13 N 1.46506 * 109.47193 * 64.52641 * 3 2 1 14 14 C 1.34775 * 119.99883 * 275.00063 * 13 3 2 15 15 O 1.21621 * 119.99807 * 359.97438 * 14 13 3 16 16 C 1.47095 * 120.00078 * 180.02562 * 14 13 3 17 17 C 1.32997 * 120.00383 * 187.24296 * 16 14 13 18 18 C 1.50710 * 119.99384 * 14.59329 * 17 16 14 19 19 N 1.46903 * 109.46821 * 129.28031 * 18 17 16 20 20 C 1.47012 * 111.00126 * 66.31564 * 19 18 17 21 21 C 1.53092 * 109.25463 * 182.35289 * 20 19 18 22 22 O 1.43018 * 109.29474 * 303.21563 * 21 20 19 23 23 C 1.43014 * 113.73620 * 58.64665 * 22 21 20 24 24 C 1.47011 * 110.99807 * 190.00100 * 19 18 17 25 25 H 1.09000 * 109.47008 * 59.99966 * 1 2 3 26 26 H 1.08999 * 109.47228 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47473 * 300.00039 * 1 2 3 28 28 H 1.09001 * 109.46963 * 239.99844 * 2 1 3 29 29 H 1.09000 * 109.47008 * 120.00034 * 2 1 3 30 30 H 0.97005 * 119.99880 * 180.02562 * 8 7 5 31 31 H 0.96994 * 120.00099 * 94.99633 * 13 3 2 32 32 H 1.08000 * 120.00060 * 7.23806 * 16 14 13 33 33 H 1.07998 * 120.00475 * 194.58889 * 17 16 14 34 34 H 1.08993 * 109.47266 * 9.27896 * 18 17 16 35 35 H 1.09000 * 109.46403 * 249.27372 * 18 17 16 36 36 H 1.08996 * 109.47174 * 62.43696 * 20 19 18 37 37 H 1.09003 * 109.54583 * 302.30632 * 20 19 18 38 38 H 1.09011 * 109.50830 * 183.26633 * 21 20 19 39 39 H 1.08994 * 109.51251 * 63.17405 * 21 20 19 40 40 H 1.08998 * 109.50142 * 61.27193 * 23 22 21 41 41 H 1.09002 * 109.50495 * 181.35236 * 23 22 21 42 42 H 1.08999 * 109.50945 * 57.66438 * 24 19 18 43 43 H 1.09004 * 109.50205 * 297.53894 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9791 -0.8467 5 6 3.5429 1.4438 -0.1120 6 1 4.1450 1.8117 0.7056 7 6 4.1491 0.9756 -1.2584 8 7 3.4234 0.6968 -2.3191 9 14 6.0012 0.7372 -1.3049 10 1 6.3269 -0.6748 -0.9805 11 1 6.5083 1.0629 -2.6621 12 1 6.6409 1.6341 -0.3091 13 7 1.6427 2.1009 1.2470 14 6 0.4245 2.6681 1.3511 15 8 -0.3447 2.6337 0.4096 16 6 0.0258 3.3297 2.6028 17 6 -1.2223 3.7619 2.7583 18 6 -2.3036 3.2964 1.8172 19 7 -3.4484 2.8013 2.5934 20 6 -4.0894 3.8926 3.3413 21 6 -5.2374 3.3240 4.1794 22 8 -6.1561 2.6419 3.3214 23 6 -5.5647 1.5722 2.5789 24 6 -4.4206 2.1232 1.7238 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8499 0.3670 -3.1256 31 1 2.2563 2.1286 1.9977 32 1 0.7466 3.4645 3.3957 33 1 -1.4611 4.4463 3.5589 34 1 -1.9172 2.4948 1.1880 35 1 -2.6225 4.1290 1.1902 36 1 -4.4805 4.6316 2.6420 37 1 -3.3579 4.3635 3.9980 38 1 -5.7524 4.1374 4.6908 39 1 -4.8396 2.6254 4.9154 40 1 -5.1758 0.8225 3.2679 41 1 -6.3165 1.1181 1.9333 42 1 -3.9301 1.3029 1.1997 43 1 -4.8177 2.8335 0.9986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867420553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:41 Heat of formation + Delta-G solvation = -76.338691 kcal Electronic energy + Delta-G solvation = -22726.496200 eV Core-core repulsion = 19385.518696 eV Total energy + Delta-G solvation = -3340.977504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96689 -40.32844 -37.49433 -36.62545 -34.27001 -34.03791 -32.76707 -32.13123 -29.47734 -28.69949 -25.82742 -24.99410 -24.85258 -23.11006 -21.47687 -21.28396 -20.60444 -18.52809 -17.92974 -17.28958 -17.12755 -16.94105 -16.44244 -16.11169 -16.01063 -15.93648 -15.38774 -15.18516 -14.79154 -14.54453 -14.41046 -13.77201 -13.48394 -13.37949 -13.25962 -13.07344 -12.85932 -12.78953 -12.60720 -12.36543 -12.20547 -12.17914 -12.01126 -11.60271 -11.53069 -11.07690 -10.66599 -10.55147 -10.39746 -10.16620 -9.57290 -9.34145 -8.19011 -6.31772 0.48790 1.43986 1.44970 1.55326 2.37558 2.44227 2.78880 2.86569 3.02044 3.12877 3.83670 3.95979 4.01781 4.11161 4.18941 4.25387 4.32670 4.45929 4.48204 4.53542 4.54805 4.63827 4.73205 4.73573 4.81552 4.89846 4.94964 5.01337 5.07266 5.25097 5.34012 5.43882 5.50452 5.60943 5.69953 5.78346 5.89890 5.96638 6.02310 6.10754 6.17397 6.77890 7.07442 7.35055 7.65784 8.89561 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038338 B = 0.003348 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.170282 B = 8362.321586 C = 8809.737104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.276 3.724 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.262 1.262 13 N -0.702 5.702 14 C 0.521 3.479 15 O -0.581 6.581 16 C -0.210 4.210 17 C -0.052 4.052 18 C 0.052 3.948 19 N -0.537 5.537 20 C 0.010 3.990 21 C 0.062 3.938 22 O -0.405 6.405 23 C 0.069 3.931 24 C 0.018 3.982 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.104 0.896 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.914 4.526 14.809 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.173 3.827 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.186 1.186 13 N -0.350 5.350 14 C 0.312 3.688 15 O -0.465 6.465 16 C -0.231 4.231 17 C -0.072 4.072 18 C -0.074 4.074 19 N -0.263 5.263 20 C -0.118 4.118 21 C -0.014 4.014 22 O -0.324 6.324 23 C -0.008 4.008 24 C -0.110 4.110 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.122 0.878 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.423 4.129 14.270 20.022 hybrid contribution 1.334 0.364 -1.064 1.745 sum -12.089 4.493 13.206 18.459 Atomic orbital electron populations 1.21660 0.96550 0.99207 1.00461 1.21686 0.94216 0.99049 1.00144 1.18342 0.93502 0.89006 0.81877 0.97915 1.21588 0.91546 1.43393 1.02248 0.91075 1.25766 1.03135 0.94865 0.94608 1.70136 1.37682 1.44698 1.02928 0.85425 0.79376 0.78727 0.77378 1.19887 1.21424 1.18600 1.46219 1.15916 1.55419 1.17401 1.19304 0.81829 0.78357 0.89357 1.90599 1.51643 1.62182 1.42086 1.22810 0.99572 1.03844 0.96913 1.23651 0.92525 0.93203 0.97827 1.21864 0.90019 1.00961 0.94531 1.62325 1.08140 1.28284 1.27555 1.22982 0.97881 0.92828 0.98138 1.22831 0.89704 0.97241 0.91669 1.87943 1.36808 1.48610 1.59016 1.22716 0.94703 0.88960 0.94443 1.22771 0.93906 0.99127 0.95223 0.95486 0.93615 0.93344 0.93206 0.93548 0.92699 0.76237 0.82232 0.82627 0.87803 0.94867 0.94804 0.87625 0.86371 0.91800 0.91864 0.86872 0.90184 0.94882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.50 71.98 0.61 -4.72 16 2 C -0.11 -5.41 5.50 30.59 0.17 -5.24 16 3 C 0.28 14.05 2.11 44.24 0.09 14.14 16 4 H 0.00 0.18 7.52 -2.39 -0.02 0.16 16 5 C -0.55 -29.02 8.66 25.60 0.22 -28.80 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.90 5.17 84.65 0.44 1.34 16 8 N -0.92 -53.14 12.14 21.45 0.26 -52.88 16 9 Si 0.97 42.11 29.55 68.60 2.03 44.14 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.70 -28.48 5.01 -449.70 -2.25 -30.73 16 14 C 0.52 19.92 6.10 86.57 0.53 20.44 16 15 O -0.58 -26.17 10.41 -4.10 -0.04 -26.21 16 16 C -0.21 -5.63 10.01 23.43 0.23 -5.40 16 17 C -0.05 -1.24 9.31 24.52 0.23 -1.01 16 18 C 0.05 1.50 4.56 85.56 0.39 1.89 16 19 N -0.54 -13.02 4.72 -899.80 -4.24 -17.26 16 20 C 0.01 0.18 5.47 86.31 0.47 0.65 16 21 C 0.06 1.03 7.01 72.01 0.50 1.53 16 22 O -0.40 -8.69 10.83 -148.98 -1.61 -10.30 16 23 C 0.07 1.35 7.01 72.01 0.50 1.85 16 24 C 0.02 0.43 5.65 86.31 0.49 0.92 16 25 H 0.03 1.28 7.82 -2.39 -0.02 1.26 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 2.05 5.66 -2.39 -0.01 2.03 16 28 H 0.05 2.69 6.79 -2.39 -0.02 2.67 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 31 H 0.40 13.82 8.51 -92.71 -0.79 13.03 16 32 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 33 H 0.16 2.46 6.80 -2.91 -0.02 2.44 16 34 H 0.10 3.79 4.77 -11.05 -0.05 3.74 16 35 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 36 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 1.50 6.52 -2.39 -0.02 1.49 16 38 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 42 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 43 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -66.95 338.84 -0.82 -67.77 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.17 Total: 27.88 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 4.88 Total: -2.40 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -6.24 Total: -100.87 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.66 Total: -36.51 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.95 -0.82 -67.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867420553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.572 kcal (2) G-P(sol) polarization free energy of solvation -66.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds