Wall clock time and date at job start Tue Mar 31 2020 02:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47037 * 2 1 4 4 C 1.50702 * 110.43269 * 55.91063 * 3 2 1 5 5 O 1.21280 * 120.00269 * 244.25863 * 4 3 2 6 6 N 1.34785 * 119.99689 * 64.25842 * 4 3 2 7 7 C 1.46496 * 119.99775 * 174.98947 * 6 4 3 8 8 C 1.53006 * 109.47114 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.46651 * 60.00054 * 8 7 6 10 10 C 1.52990 * 109.47039 * 300.00261 * 8 7 6 11 11 C 1.50702 * 109.47268 * 179.97438 * 8 7 6 12 12 H 1.08009 * 119.99676 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00270 * 180.27692 * 11 8 7 14 14 N 1.31516 * 119.99572 * 359.72819 * 13 11 8 15 15 Si 1.86792 * 120.00371 * 179.72779 * 13 11 8 16 16 H 1.48496 * 109.47519 * 89.99697 * 15 13 11 17 17 H 1.48495 * 109.47388 * 210.00089 * 15 13 11 18 18 H 1.48507 * 109.47096 * 330.00040 * 15 13 11 19 19 C 1.54621 * 110.48510 * 178.45192 * 3 2 1 20 20 C 1.54476 * 101.76535 * 94.01839 * 19 3 2 21 21 N 1.46765 * 105.47265 * 25.41295 * 20 19 3 22 22 C 1.34649 * 111.33672 * 342.87135 * 21 20 19 23 23 O 1.21278 * 125.07244 * 180.50731 * 22 21 20 24 24 H 1.08999 * 109.46963 * 180.27688 * 1 2 3 25 25 H 1.08999 * 109.46669 * 300.27139 * 1 2 3 26 26 H 1.08999 * 109.47349 * 60.26726 * 1 2 3 27 27 H 1.09004 * 109.46802 * 240.00545 * 2 1 3 28 28 H 1.08996 * 109.46868 * 120.00273 * 2 1 3 29 29 H 0.96996 * 119.99908 * 354.98895 * 6 4 3 30 30 H 1.09007 * 109.47426 * 60.00148 * 7 6 4 31 31 H 1.08994 * 109.47649 * 299.99854 * 7 6 4 32 32 H 1.09001 * 109.47085 * 179.97438 * 9 8 7 33 33 H 1.08996 * 109.47586 * 300.00238 * 9 8 7 34 34 H 1.09008 * 109.46899 * 60.00435 * 9 8 7 35 35 H 1.09001 * 109.47549 * 299.99347 * 10 8 7 36 36 H 1.09001 * 109.47590 * 60.00130 * 10 8 7 37 37 H 1.09008 * 109.47075 * 179.97438 * 10 8 7 38 38 H 0.97003 * 120.00141 * 179.97438 * 14 13 11 39 39 H 1.09006 * 110.97071 * 212.13684 * 19 3 2 40 40 H 1.09000 * 110.97167 * 335.89778 * 19 3 2 41 41 H 1.09003 * 110.24851 * 144.41698 * 20 19 3 42 42 H 1.09005 * 110.24526 * 266.33070 * 20 19 3 43 43 H 0.97001 * 124.34265 * 162.98505 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4691 2.2024 1.1695 5 8 0.7273 3.1426 0.9780 6 7 1.7830 1.8370 2.4284 7 6 1.3180 2.6405 3.5617 8 6 1.8077 2.0116 4.8677 9 6 3.3370 1.9648 4.8691 10 6 1.2539 0.5906 4.9886 11 6 1.3299 2.8385 6.0336 12 1 0.7359 3.7237 5.8603 13 6 1.6554 2.4678 7.3210 14 7 2.3783 1.3896 7.5320 15 14 1.0695 3.4968 8.7657 16 1 -0.2536 3.0010 9.2224 17 1 2.0482 3.3917 9.8775 18 1 0.9482 4.9160 8.3456 19 6 3.5855 1.4701 0.0391 20 6 3.9369 1.5681 -1.4619 21 7 2.7704 2.1923 -2.0972 22 6 1.6865 2.1291 -1.3008 23 8 0.5885 2.5601 -1.5828 24 1 -0.3633 -1.0277 0.0050 25 1 -0.3632 0.5180 0.8876 26 1 -0.3634 0.5097 -0.8923 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.3167 1.0422 2.5839 30 1 0.2284 2.6735 3.5610 31 1 1.7121 3.6530 3.4754 32 1 3.6860 1.5173 5.7997 33 1 3.6830 1.3671 4.0259 34 1 3.7315 2.9774 4.7830 35 1 0.1644 0.6239 4.9877 36 1 1.5999 -0.0072 4.1454 37 1 1.6032 0.1424 5.9189 38 1 2.6076 1.1289 8.4377 39 1 3.9465 2.3436 0.5821 40 1 3.9812 0.5519 0.4733 41 1 4.8209 2.1900 -1.6026 42 1 4.1061 0.5738 -1.8754 43 1 2.7785 2.5970 -2.9787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868841825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:28 Heat of formation + Delta-G solvation = -85.193720 kcal Electronic energy + Delta-G solvation = -23681.684941 eV Core-core repulsion = 20340.323455 eV Total energy + Delta-G solvation = -3341.361487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18132 -38.61100 -36.46337 -36.29951 -34.22664 -33.10830 -30.84578 -30.20881 -27.59856 -25.74180 -25.63508 -24.90230 -23.03475 -22.35960 -21.49483 -19.18091 -18.72791 -17.59170 -16.61237 -16.03321 -15.87268 -15.23182 -14.96751 -14.72918 -14.37838 -14.22595 -13.77776 -13.28605 -13.20297 -13.08276 -12.87345 -12.50077 -12.46490 -12.20380 -12.00294 -11.70969 -11.40074 -11.21027 -11.16118 -10.90861 -10.83462 -10.69803 -10.39510 -10.20486 -9.68364 -9.64468 -9.50956 -9.26248 -9.11267 -8.79301 -8.44979 -8.30351 -6.02898 -4.12604 2.56213 3.02508 3.16306 3.28360 3.35351 3.39590 3.73597 4.06608 4.27758 4.40348 4.56102 4.73462 4.96446 5.10445 5.17046 5.24141 5.31028 5.38129 5.54610 5.64741 5.78693 5.89299 6.04791 6.22526 6.32736 6.37877 6.49682 6.69842 6.78062 6.80448 6.88513 6.92452 7.00713 7.03288 7.34393 7.54330 7.68863 7.99960 8.03397 8.14200 8.25850 8.38053 8.70460 8.88151 9.53293 10.98480 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030210 B = 0.004215 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.635371 B = 6640.916209 C = 6734.845001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.096 4.096 3 C -0.119 4.119 4 C 0.524 3.476 5 O -0.527 6.527 6 N -0.713 5.713 7 C 0.133 3.867 8 C 0.056 3.944 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.505 4.505 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.127 4.127 20 C 0.105 3.895 21 N -0.739 5.739 22 C 0.542 3.458 23 O -0.495 6.495 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.397 0.603 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.006 0.994 37 H 0.085 0.915 38 H 0.260 0.740 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 -5.713 -15.369 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.134 4.134 3 C -0.126 4.126 4 C 0.307 3.693 5 O -0.403 6.403 6 N -0.364 5.364 7 C 0.010 3.990 8 C 0.056 3.944 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.544 4.544 12 H 0.075 0.925 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.165 4.165 20 C -0.020 4.020 21 N -0.397 5.397 22 C 0.326 3.674 23 O -0.367 6.367 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.232 0.768 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.025 0.975 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.025 0.975 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.359 -4.920 -15.354 16.990 hybrid contribution 0.136 0.318 0.545 0.646 sum 5.495 -4.602 -14.808 16.452 Atomic orbital electron populations 1.21859 0.94380 1.01852 1.03684 1.21414 0.97547 0.91211 1.03271 1.21737 0.97518 0.98565 0.94751 1.19619 0.81484 0.84502 0.83684 1.90764 1.35244 1.29155 1.85091 1.46208 1.54724 1.30007 1.05487 1.21729 0.98575 0.93746 0.84908 1.18354 0.92784 0.93373 0.89934 1.21828 0.97736 0.98562 1.00667 1.21821 0.98594 0.97599 1.00746 1.20987 1.32999 1.10204 0.90182 0.92470 1.24865 0.94826 0.95085 0.98680 1.69800 1.37812 1.24079 1.20794 0.86578 0.78470 0.80802 0.82071 1.20712 1.21284 1.19920 1.22786 0.92253 1.05121 0.96362 1.22020 0.88814 0.98492 0.92628 1.46165 1.11385 1.61631 1.20507 1.20061 0.84019 0.78135 0.85206 1.90757 1.22867 1.46574 1.76462 0.92223 0.91954 0.91607 0.90829 0.90053 0.76809 0.92646 0.92827 0.89577 0.97515 0.95476 0.95419 0.97522 0.89640 0.93034 0.89158 0.88105 0.90053 0.90843 0.75126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.42 37.16 0.35 -1.80 16 2 C -0.10 -1.07 4.91 -26.73 -0.13 -1.20 16 3 C -0.12 -1.56 0.48 -155.67 -0.07 -1.64 16 4 C 0.52 9.30 5.01 -10.98 -0.05 9.25 16 5 O -0.53 -11.91 15.38 -13.77 -0.21 -12.12 16 6 N -0.71 -12.34 4.82 -60.29 -0.29 -12.63 16 7 C 0.13 2.80 4.51 -4.04 -0.02 2.78 16 8 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 9 C -0.13 -2.81 8.07 37.16 0.30 -2.51 16 10 C -0.13 -2.86 8.08 37.15 0.30 -2.56 16 11 C -0.51 -13.10 8.01 -34.44 -0.28 -13.37 16 12 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 13 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 14 N -0.89 -23.21 9.35 55.43 0.52 -22.69 16 15 Si 0.89 20.62 29.54 -169.99 -5.02 15.59 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.13 -1.17 6.10 -25.10 -0.15 -1.32 16 20 C 0.11 0.74 7.78 -3.12 -0.02 0.72 16 21 N -0.74 -7.51 6.25 -59.14 -0.37 -7.88 16 22 C 0.54 8.07 6.52 -10.76 -0.07 8.00 16 23 O -0.49 -9.60 15.67 -13.76 -0.22 -9.82 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.99 7.14 -51.93 -0.37 0.62 16 26 H 0.06 0.99 6.63 -51.93 -0.34 0.64 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 29 H 0.40 6.02 5.89 -40.82 -0.24 5.78 16 30 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 2.08 6.06 -51.93 -0.31 1.76 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 34 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 37 H 0.08 2.08 6.08 -51.92 -0.32 1.77 16 38 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.09 0.92 7.91 -51.93 -0.41 0.51 16 40 H 0.10 0.67 7.90 -51.93 -0.41 0.26 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.41 3.40 8.96 -40.82 -0.37 3.03 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -32.23 336.26 -7.36 -39.59 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.82 Total: 5.70 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.02 Total: -0.81 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.14 Total: -43.20 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.43 Total: -21.94 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.23 -7.36 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868841825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.602 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds