Wall clock time and date at job start Tue Mar 31 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47173 * 2 1 4 4 C 1.50698 * 110.43371 * 54.48681 * 3 2 1 5 5 O 1.21286 * 119.99651 * 243.62876 * 4 3 2 6 6 N 1.34775 * 120.00353 * 63.63164 * 4 3 2 7 7 C 1.46497 * 120.00231 * 174.80372 * 6 4 3 8 8 C 1.52999 * 109.47111 * 180.02562 * 7 6 4 9 9 C 1.52994 * 109.47437 * 59.99947 * 8 7 6 10 10 C 1.53003 * 109.47081 * 299.99660 * 8 7 6 11 11 C 1.50703 * 109.47016 * 180.02562 * 8 7 6 12 12 H 1.08001 * 120.00145 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99859 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00145 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99699 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47327 * 59.99724 * 15 13 11 17 17 H 1.48505 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47359 * 299.99442 * 15 13 11 19 19 C 1.54623 * 110.48341 * 291.94453 * 3 2 1 20 20 C 1.54688 * 101.66938 * 265.90727 * 19 3 2 21 21 N 1.46760 * 105.53415 * 334.74029 * 20 19 3 22 22 C 1.34420 * 111.30122 * 16.92420 * 21 20 19 23 23 O 1.21276 * 124.94297 * 179.55642 * 22 21 20 24 24 H 1.08996 * 109.47151 * 177.67328 * 1 2 3 25 25 H 1.09003 * 109.47497 * 297.67621 * 1 2 3 26 26 H 1.08997 * 109.46941 * 57.67265 * 1 2 3 27 27 H 1.08998 * 109.47109 * 239.99461 * 2 1 3 28 28 H 1.09006 * 109.47097 * 119.99451 * 2 1 3 29 29 H 0.97007 * 119.99552 * 354.81078 * 6 4 3 30 30 H 1.08999 * 109.47202 * 59.99735 * 7 6 4 31 31 H 1.09004 * 109.46927 * 299.99988 * 7 6 4 32 32 H 1.09004 * 109.46979 * 300.00310 * 9 8 7 33 33 H 1.09000 * 109.46905 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47108 * 60.00056 * 9 8 7 35 35 H 1.08996 * 109.47604 * 180.02562 * 10 8 7 36 36 H 1.09005 * 109.47341 * 300.00859 * 10 8 7 37 37 H 1.09004 * 109.46726 * 60.00063 * 10 8 7 38 38 H 0.97006 * 120.00040 * 180.02562 * 14 13 11 39 39 H 1.09004 * 110.97195 * 24.10968 * 19 3 2 40 40 H 1.09005 * 110.97025 * 147.86803 * 19 3 2 41 41 H 1.09009 * 110.29404 * 215.68058 * 20 19 3 42 42 H 1.09001 * 110.14124 * 93.72623 * 20 19 3 43 43 H 0.96999 * 124.35230 * 196.94365 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4420 2.2120 1.1495 5 8 0.7141 3.1577 0.9327 6 7 1.7160 1.8495 2.4183 7 6 1.2287 2.6638 3.5343 8 6 1.6753 2.0366 4.8564 9 6 3.2033 1.9733 4.9005 10 6 1.1028 0.6222 4.9690 11 6 1.1734 2.8739 6.0045 12 1 0.5942 3.7646 5.8106 13 6 1.4546 2.5035 7.3025 14 7 2.1603 1.4192 7.5387 15 14 0.8331 3.5418 8.7255 16 1 -0.6501 3.6028 8.6830 17 1 1.2665 2.9330 10.0088 18 1 1.3883 4.9147 8.6160 19 6 1.7100 2.1331 -1.3435 20 6 3.0118 1.8964 -2.1450 21 7 4.0679 1.7313 -1.1394 22 6 3.5508 1.4699 0.0735 23 8 4.2008 1.2827 1.0801 24 1 -0.3633 -1.0268 -0.0417 25 1 -0.3634 0.4773 0.9101 26 1 -0.3633 0.5495 -0.8684 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.2361 1.0493 2.5925 30 1 0.1401 2.7093 3.5027 31 1 1.6369 3.6713 3.4543 32 1 3.5659 1.3674 4.0700 33 1 3.5214 1.5268 5.8426 34 1 3.6111 2.9809 4.8203 35 1 1.4205 0.1754 5.9111 36 1 0.0141 0.6672 4.9376 37 1 1.4654 0.0163 4.1386 38 1 2.3578 1.1584 8.4519 39 1 0.8585 1.6559 -1.8287 40 1 1.5288 3.1984 -1.2004 41 1 3.2265 2.7562 -2.7799 42 1 2.9216 0.9937 -2.7492 43 1 5.0172 1.8020 -1.3260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868841826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:30 Heat of formation + Delta-G solvation = -85.963415 kcal Electronic energy + Delta-G solvation = -23803.844040 eV Core-core repulsion = 20462.449177 eV Total energy + Delta-G solvation = -3341.394863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22409 -38.64909 -36.75946 -36.07624 -34.30397 -33.08941 -30.73770 -29.89264 -27.95345 -25.60909 -25.52331 -24.83609 -23.48824 -21.82094 -21.46086 -19.17519 -18.65552 -17.55861 -16.67158 -16.41175 -15.73084 -15.26734 -14.85799 -14.68520 -14.50106 -14.13883 -13.76471 -13.57208 -13.36197 -12.99105 -12.81415 -12.50133 -12.13845 -12.11148 -11.88109 -11.79759 -11.28652 -11.17068 -11.08399 -10.92712 -10.76993 -10.67133 -10.28110 -10.13363 -9.87551 -9.52253 -9.47912 -9.28789 -9.15627 -8.69757 -8.37062 -8.22067 -5.94250 -4.04571 2.39536 2.92550 3.26803 3.34473 3.38580 3.41826 3.71527 4.09468 4.30443 4.45853 4.61291 4.75798 4.94313 5.11480 5.17391 5.21963 5.31891 5.38295 5.52071 5.71647 5.83247 5.90730 5.99752 6.21942 6.31997 6.40127 6.59362 6.61851 6.80526 6.84925 6.98431 7.05301 7.12587 7.17032 7.46884 7.66981 7.76801 8.09820 8.11501 8.14407 8.24141 8.46598 8.71271 8.95680 9.60553 11.06950 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.004476 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.252205 B = 6254.629077 C = 6435.937006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.119 4.119 4 C 0.527 3.473 5 O -0.549 6.549 6 N -0.699 5.699 7 C 0.132 3.868 8 C 0.057 3.943 9 C -0.131 4.131 10 C -0.130 4.130 11 C -0.506 4.506 12 H 0.056 0.944 13 C 0.066 3.934 14 N -0.885 5.885 15 Si 0.893 3.107 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.116 4.116 20 C 0.101 3.899 21 N -0.731 5.731 22 C 0.529 3.471 23 O -0.507 6.507 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.404 0.596 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.013 0.987 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.006 0.994 38 H 0.260 0.740 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -3.849 -19.635 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.126 4.126 4 C 0.310 3.690 5 O -0.428 6.428 6 N -0.349 5.349 7 C 0.009 3.991 8 C 0.056 3.944 9 C -0.189 4.189 10 C -0.187 4.187 11 C -0.544 4.544 12 H 0.074 0.926 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.154 4.154 20 C -0.024 4.024 21 N -0.388 5.388 22 C 0.313 3.687 23 O -0.381 6.381 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.241 0.759 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.102 0.898 34 H 0.043 0.957 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.695 -3.382 -19.003 19.314 hybrid contribution 0.412 0.254 0.692 0.844 sum 1.107 -3.128 -18.311 18.609 Atomic orbital electron populations 1.21838 0.94113 1.02194 1.03027 1.21383 0.97326 0.91427 1.03525 1.21753 0.94344 0.99153 0.97303 1.19554 0.81395 0.84175 0.83840 1.90656 1.37884 1.29539 1.84738 1.46267 1.53934 1.29378 1.05309 1.21745 0.97999 0.93673 0.85633 1.18346 0.93126 0.93321 0.89618 1.21810 0.97258 0.98674 1.01127 1.21818 0.98201 0.97705 1.01000 1.20945 1.33763 1.09537 0.90171 0.92580 1.24875 0.94915 0.95088 0.98612 1.69812 1.38731 1.23768 1.20037 0.86643 0.79213 0.80538 0.81486 1.20331 1.21364 1.20341 1.22730 0.97118 1.03470 0.92074 1.22166 0.87107 1.01948 0.91147 1.46098 1.09642 1.73457 1.09583 1.20404 0.89486 0.75559 0.83224 1.90828 1.66258 1.48479 1.32524 0.91888 0.91855 0.92038 0.90630 0.90472 0.75916 0.92609 0.92903 0.96766 0.89790 0.95702 0.89610 0.95515 0.97530 0.93015 0.88468 0.88213 0.90010 0.90934 0.74970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.42 37.16 0.35 -1.31 16 2 C -0.10 -1.09 4.97 -26.73 -0.13 -1.22 16 3 C -0.12 -1.57 0.48 -155.67 -0.07 -1.65 16 4 C 0.53 9.45 5.11 -10.99 -0.06 9.39 16 5 O -0.55 -11.21 15.56 5.55 0.09 -11.12 16 6 N -0.70 -13.68 4.53 -60.30 -0.27 -13.96 16 7 C 0.13 2.97 4.51 -4.04 -0.02 2.95 16 8 C 0.06 1.39 0.50 -155.66 -0.08 1.31 16 9 C -0.13 -3.24 8.08 37.15 0.30 -2.94 16 10 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 11 C -0.51 -13.70 8.01 -34.44 -0.28 -13.97 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 14 N -0.88 -24.37 9.35 55.43 0.52 -23.85 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.12 -1.16 5.81 -24.99 -0.15 -1.30 16 20 C 0.10 0.72 7.79 -3.01 -0.02 0.70 16 21 N -0.73 -7.28 6.24 -59.09 -0.37 -7.64 16 22 C 0.53 7.57 7.17 -10.86 -0.08 7.49 16 23 O -0.51 -9.31 16.79 5.56 0.09 -9.22 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.86 7.21 -51.93 -0.37 0.49 16 26 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 29 H 0.40 7.82 5.12 -40.82 -0.21 7.62 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.01 0.31 6.86 -51.93 -0.36 -0.04 16 33 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.10 0.77 6.36 -51.93 -0.33 0.44 16 40 H 0.10 1.18 7.10 -51.93 -0.37 0.81 16 41 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.41 3.34 8.96 -40.82 -0.37 2.98 16 LS Contribution 334.65 15.07 5.04 5.04 Total: -1.00 -31.56 334.65 -6.61 -38.17 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.66 Total: 7.98 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.02 Total: -1.61 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.12 Total: -45.45 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.18 Total: -20.34 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.56 -6.61 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868841826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.797 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds