Wall clock time and date at job start Tue Mar 31 2020 02:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47219 * 2 1 4 4 N 1.46911 * 109.47043 * 119.99570 * 2 1 3 5 5 C 1.46900 * 110.99893 * 306.99285 * 4 2 1 6 6 C 1.50701 * 109.47213 * 287.25373 * 5 4 2 7 7 H 1.07993 * 119.99774 * 357.61631 * 6 5 4 8 8 C 1.37877 * 120.00030 * 177.61134 * 6 5 4 9 9 N 1.31516 * 119.99949 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00065 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47306 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46901 * 120.00203 * 10 8 6 13 13 H 1.48499 * 109.47365 * 240.00244 * 10 8 6 14 14 C 1.46900 * 110.99753 * 70.94503 * 4 2 1 15 15 N 1.46504 * 109.46989 * 83.77209 * 14 4 2 16 16 C 1.47124 * 124.33105 * 82.36935 * 15 14 4 17 17 C 1.53047 * 105.18890 * 195.70670 * 16 15 14 18 18 C 1.52486 * 116.66815 * 206.79089 * 17 16 15 19 19 O 1.44491 * 84.99289 * 219.55921 * 18 17 16 20 20 C 1.44486 * 93.62522 * 23.07915 * 19 18 17 21 21 C 1.53194 * 103.44081 * 336.17865 * 17 16 15 22 22 C 1.34827 * 124.46796 * 262.39744 * 15 14 4 23 23 O 1.21279 * 124.89095 * 359.61861 * 22 15 14 24 24 H 1.09004 * 109.47538 * 308.26772 * 1 2 3 25 25 H 1.09000 * 109.47059 * 68.26597 * 1 2 3 26 26 H 1.08994 * 109.47367 * 188.27085 * 1 2 3 27 27 H 1.08998 * 109.47393 * 239.99412 * 2 1 3 28 28 H 1.09003 * 109.47399 * 171.76163 * 3 2 1 29 29 H 1.08999 * 109.46959 * 291.76078 * 3 2 1 30 30 H 1.08996 * 109.47541 * 51.76116 * 3 2 1 31 31 H 1.09006 * 109.47349 * 47.25530 * 5 4 2 32 32 H 1.08997 * 109.47263 * 167.25360 * 5 4 2 33 33 H 0.97000 * 120.00003 * 179.97438 * 9 8 6 34 34 H 1.08992 * 109.47410 * 323.77327 * 14 4 2 35 35 H 1.08998 * 109.46854 * 203.76510 * 14 4 2 36 36 H 1.08996 * 110.31888 * 76.74720 * 16 15 14 37 37 H 1.09001 * 110.32195 * 314.65844 * 16 15 14 38 38 H 1.09004 * 113.94715 * 333.57012 * 18 17 16 39 39 H 1.08997 * 113.95060 * 105.54453 * 18 17 16 40 40 H 1.09002 * 113.94317 * 222.91078 * 20 19 18 41 41 H 1.08994 * 113.95203 * 90.93787 * 20 19 18 42 42 H 1.08996 * 110.56299 * 141.81495 * 21 17 16 43 43 H 1.09000 * 110.55959 * 264.65005 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.4171 -0.1294 2.4153 6 6 2.0160 1.2256 2.6916 7 1 2.7962 1.6116 2.0524 8 6 1.5677 1.9725 3.7603 9 7 0.6178 1.5022 4.5389 10 14 2.3106 3.6517 4.1033 11 1 3.3540 3.9479 3.0891 12 1 1.2474 4.6864 4.0357 13 1 2.9203 3.6562 5.4573 14 6 1.7730 -2.1379 1.1106 15 7 2.8515 -2.7712 0.3477 16 6 4.1539 -3.1549 0.9141 17 6 5.0631 -3.3902 -0.2944 18 6 6.2207 -4.3637 -0.1007 19 8 6.9767 -3.4260 -0.8987 20 6 6.1062 -2.3164 -0.5849 21 6 4.0788 -3.7120 -1.4232 22 6 2.7805 -3.0778 -0.9634 23 8 1.8175 -2.8751 -1.6721 24 1 -0.3634 0.6365 0.8069 25 1 -0.3633 0.3805 -0.9546 26 1 -0.3634 -1.0169 0.1478 27 1 1.8933 -0.5139 -0.8899 28 1 3.1200 1.4460 0.1473 29 1 1.8019 1.9120 -0.9544 30 1 1.5615 1.9971 0.8071 31 1 0.3408 -0.0291 2.2745 32 1 1.6130 -0.7920 3.2583 33 1 0.3027 2.0275 5.2910 34 1 0.8214 -2.3139 0.6091 35 1 1.7393 -2.5631 2.1136 36 1 4.0577 -4.0696 1.4990 37 1 4.5491 -2.3500 1.5339 38 1 6.5634 -4.4440 0.9309 39 1 6.0698 -5.3313 -0.5794 40 1 5.8660 -1.6866 -1.4416 41 1 6.4126 -1.7480 0.2932 42 1 4.4118 -3.2659 -2.3603 43 1 3.9605 -4.7901 -1.5322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872569777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:33 Heat of formation + Delta-G solvation = -42.381343 kcal Electronic energy + Delta-G solvation = -23752.276909 eV Core-core repulsion = 20412.771907 eV Total energy + Delta-G solvation = -3339.505003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.37701 -40.40576 -39.08675 -36.90474 -34.68772 -33.42697 -31.65167 -29.46766 -29.11061 -27.88175 -27.58427 -26.49521 -24.92633 -24.11735 -20.95204 -20.30860 -20.22328 -18.56338 -17.80847 -17.54383 -16.96399 -16.83636 -16.74414 -16.40849 -16.01368 -15.91885 -15.39189 -15.00179 -14.54339 -14.19528 -14.15272 -14.05720 -13.98727 -13.22895 -13.11225 -12.98136 -12.88879 -12.83634 -12.59798 -12.58263 -12.43596 -12.07339 -11.95467 -11.76181 -11.59704 -11.34979 -11.00745 -10.93196 -10.53476 -10.48490 -9.81383 -9.02902 -8.11944 -6.14638 1.42166 1.45068 1.52060 1.56379 2.04946 2.45250 2.66937 3.10347 3.20761 3.28170 3.35478 3.49948 3.88131 4.06408 4.17651 4.29234 4.35752 4.40815 4.48163 4.51163 4.58508 4.63067 4.71443 4.71917 4.79515 4.82561 4.91386 4.96026 5.03062 5.06757 5.10672 5.21065 5.21368 5.26460 5.45390 5.54107 5.71068 5.78084 6.10175 6.18429 6.41190 6.62272 6.96265 7.15850 7.49551 8.98531 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.005122 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.090671 B = 5465.173486 C = 6106.073240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 C -0.136 4.136 4 N -0.543 5.543 5 C 0.205 3.795 6 C -0.501 4.501 7 H 0.077 0.923 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.953 3.047 11 H -0.263 1.263 12 H -0.286 1.286 13 H -0.283 1.283 14 C 0.284 3.716 15 N -0.603 5.603 16 C 0.112 3.888 17 C -0.136 4.136 18 C 0.066 3.934 19 O -0.403 6.403 20 C 0.052 3.948 21 C -0.115 4.115 22 C 0.506 3.494 23 O -0.580 6.580 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.070 0.930 31 H -0.014 1.014 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 -11.562 -8.231 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 C -0.193 4.193 4 N -0.269 5.269 5 C 0.079 3.921 6 C -0.539 4.539 7 H 0.095 0.905 8 C -0.194 4.194 9 N -0.577 5.577 10 Si 0.780 3.220 11 H -0.187 1.187 12 H -0.212 1.212 13 H -0.209 1.209 14 C 0.072 3.928 15 N -0.336 5.336 16 C -0.011 4.011 17 C -0.137 4.137 18 C -0.011 4.011 19 O -0.322 6.322 20 C -0.025 4.025 21 C -0.155 4.155 22 C 0.295 3.705 23 O -0.460 6.460 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.004 0.996 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.053 -11.337 -8.514 17.381 hybrid contribution -1.258 1.005 0.666 1.742 sum 8.795 -10.332 -7.849 15.675 Atomic orbital electron populations 1.22269 0.98239 1.00551 1.01596 1.21383 0.92278 0.95643 0.91832 1.22098 1.00773 0.95399 1.01042 1.62034 1.59583 1.01921 1.03371 1.19488 0.92499 0.94501 0.85568 1.21699 1.19614 1.01608 1.10990 0.90525 1.25726 0.95798 1.01746 0.96165 1.70080 1.30200 1.39403 1.18025 0.85559 0.78404 0.79998 0.78061 1.18665 1.21202 1.20934 1.21720 0.87857 0.87468 0.95736 1.48691 1.16806 1.58037 1.10058 1.22142 0.81078 1.01945 0.95897 1.23624 0.95652 0.98766 0.95658 1.24008 0.85027 0.94241 0.97797 1.89747 1.53016 1.21361 1.68094 1.23913 0.86302 0.90545 1.01706 1.21996 0.90152 1.04260 0.99070 1.21753 0.89671 0.77374 0.81681 1.90684 1.38697 1.57556 1.59081 0.93348 0.91851 0.93959 0.92272 0.93314 0.93141 0.91131 0.99611 0.97689 0.93131 0.93425 0.89335 0.88189 0.90053 0.87513 0.86498 0.89304 0.88718 0.87392 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.62 8.29 71.98 0.60 -6.02 16 2 C 0.10 3.87 2.89 44.91 0.13 4.00 16 3 C -0.14 -5.37 7.69 71.98 0.55 -4.81 16 4 N -0.54 -22.17 4.59 -887.80 -4.07 -26.24 16 5 C 0.21 10.08 4.45 85.56 0.38 10.46 16 6 C -0.50 -26.14 6.69 25.60 0.17 -25.97 16 7 H 0.08 3.93 5.38 -2.91 -0.02 3.91 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.94 -54.00 13.29 21.45 0.28 -53.71 16 10 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 14 C 0.28 10.02 5.69 170.80 0.97 10.99 16 15 N -0.60 -17.37 3.19 -829.87 -2.65 -20.02 16 16 C 0.11 2.29 6.83 86.28 0.59 2.88 16 17 C -0.14 -2.31 1.15 -52.44 -0.06 -2.37 16 18 C 0.07 0.82 8.59 71.80 0.62 1.44 16 19 O -0.40 -7.95 12.46 -148.98 -1.86 -9.80 16 20 C 0.05 0.99 8.49 71.81 0.61 1.60 16 21 C -0.12 -2.21 6.31 30.21 0.19 -2.01 16 22 C 0.51 14.98 7.46 87.95 0.66 15.64 16 23 O -0.58 -22.17 16.71 -3.03 -0.05 -22.22 16 24 H 0.05 2.12 6.50 -2.39 -0.02 2.11 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.04 1.65 6.31 -2.39 -0.02 1.63 16 27 H 0.06 2.39 6.60 -2.39 -0.02 2.38 16 28 H 0.05 1.92 7.51 -2.39 -0.02 1.90 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 3.17 5.43 -2.39 -0.01 3.16 16 31 H -0.01 -0.74 5.68 -2.38 -0.01 -0.75 16 32 H 0.01 0.27 7.60 -2.39 -0.02 0.25 16 33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.05 1.82 5.72 -2.39 -0.01 1.80 16 35 H 0.09 2.99 7.49 -2.39 -0.02 2.98 16 36 H 0.10 1.55 8.13 -2.39 -0.02 1.53 16 37 H 0.08 1.89 7.90 -2.39 -0.02 1.87 16 38 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.12 0.96 8.09 -2.39 -0.02 0.94 16 40 H 0.09 1.76 8.04 -2.39 -0.02 1.74 16 41 H 0.09 1.74 8.01 -2.39 -0.02 1.72 16 42 H 0.11 2.05 7.93 -2.39 -0.02 2.04 16 43 H 0.13 1.86 8.10 -2.39 -0.02 1.84 16 Total: -1.00 -66.33 334.24 0.56 -65.78 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.00 Total: 14.91 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.87 Total: 6.43 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -6.43 Total: -99.97 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.91 Total: -32.02 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -66.33 0.56 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872569777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.397 kcal (2) G-P(sol) polarization free energy of solvation -66.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds