Wall clock time and date at job start Tue Mar 31 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47065 * 2 1 4 4 C 1.53002 * 110.88543 * 300.19535 * 3 2 1 5 5 C 1.53001 * 109.47060 * 300.10558 * 4 3 2 6 6 C 1.54476 * 110.96910 * 176.38693 * 3 2 1 7 7 N 1.46766 * 105.46834 * 216.46723 * 6 3 2 8 8 C 1.34412 * 111.30736 * 17.01343 * 7 6 3 9 9 O 1.21280 * 124.94539 * 179.63047 * 8 7 6 10 10 C 1.51286 * 110.11344 * 359.59199 * 8 7 6 11 11 H 1.09005 * 110.48234 * 102.42354 * 10 8 7 12 12 N 1.46497 * 110.49019 * 224.93325 * 10 8 7 13 13 C 1.34770 * 120.00349 * 271.76079 * 12 10 8 14 14 O 1.21278 * 119.99824 * 359.97438 * 13 12 10 15 15 C 1.50696 * 119.99986 * 179.97438 * 13 12 10 16 16 H 1.08998 * 109.47071 * 299.99607 * 15 13 12 17 17 C 1.52995 * 109.47238 * 60.00102 * 15 13 12 18 18 C 1.50701 * 109.47107 * 180.02562 * 15 13 12 19 19 H 1.08008 * 119.99906 * 359.97438 * 18 15 13 20 20 C 1.37881 * 120.00359 * 179.97438 * 18 15 13 21 21 N 1.31512 * 119.99388 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00353 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47251 * 90.00021 * 22 20 18 24 24 H 1.48499 * 109.47095 * 210.00431 * 22 20 18 25 25 H 1.48510 * 109.47018 * 330.00359 * 22 20 18 26 26 H 1.09002 * 109.47131 * 304.12769 * 1 2 3 27 27 H 1.08994 * 109.47497 * 64.12917 * 1 2 3 28 28 H 1.09004 * 109.47039 * 184.13023 * 1 2 3 29 29 H 1.08997 * 109.47173 * 240.00640 * 2 1 3 30 30 H 1.09000 * 109.47404 * 119.99663 * 2 1 3 31 31 H 1.09004 * 109.46931 * 60.10179 * 4 3 2 32 32 H 1.09001 * 109.47171 * 180.10450 * 4 3 2 33 33 H 1.09000 * 109.46647 * 178.84198 * 5 4 3 34 34 H 1.08991 * 109.46956 * 298.84562 * 5 4 3 35 35 H 1.09009 * 109.47140 * 58.84620 * 5 4 3 36 36 H 1.08994 * 110.24923 * 97.46986 * 6 3 2 37 37 H 1.09000 * 110.31965 * 335.49968 * 6 3 2 38 38 H 0.97002 * 124.34518 * 197.03776 * 7 6 3 39 39 H 0.97003 * 119.99630 * 91.75428 * 12 10 8 40 40 H 1.08996 * 109.46984 * 59.99773 * 17 15 13 41 41 H 1.08998 * 109.47236 * 179.97438 * 17 15 13 42 42 H 1.08996 * 109.47367 * 299.99907 * 17 15 13 43 43 H 0.97006 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5439 2.1965 -1.2355 5 6 2.0479 1.4941 -2.4980 6 6 3.5815 1.4839 0.0909 7 7 3.8932 2.6489 0.9273 8 6 2.8155 3.0549 1.6204 9 8 2.7976 3.9908 2.3916 10 6 1.6277 2.1752 1.2978 11 1 1.4538 1.4594 2.1012 12 7 0.4319 2.9908 1.0717 13 6 -0.3587 3.3298 2.1092 14 8 -0.0804 2.9592 3.2300 15 6 -1.5884 4.1692 1.8767 16 1 -1.2984 5.1262 1.4430 17 6 -2.5304 3.4390 0.9174 18 6 -2.2910 4.4052 3.1889 19 1 -1.8875 3.9886 4.1000 20 6 -3.4488 5.1530 3.2263 21 7 -3.9402 5.6598 2.1167 22 14 -4.3200 5.4450 4.8526 23 1 -3.7944 6.6838 5.4803 24 1 -5.7783 5.5914 4.6136 25 1 -4.0799 4.2916 5.7568 26 1 -0.3633 0.5766 0.8507 27 1 -0.3634 0.4484 -0.9246 28 1 -0.3633 -1.0250 0.0740 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.4540 2.2115 -1.2387 32 1 1.9214 3.2188 -1.2132 33 1 1.6774 2.0194 -3.3783 34 1 3.1377 1.4971 -2.5048 35 1 1.6872 0.4655 -2.5100 36 1 4.0148 1.6056 -0.9018 37 1 3.9577 0.5734 0.5572 38 1 4.7649 3.0718 0.9737 39 1 0.2092 3.2869 0.1752 40 1 -2.8204 2.4821 1.3511 41 1 -3.4200 4.0460 0.7496 42 1 -2.0220 3.2687 -0.0316 43 1 -4.7550 6.1856 2.1429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886729183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:56 Heat of formation + Delta-G solvation = -82.182169 kcal Electronic energy + Delta-G solvation = -23941.101441 eV Core-core repulsion = 20599.870545 eV Total energy + Delta-G solvation = -3341.230896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13188 -38.27898 -37.51848 -34.59076 -33.66738 -33.28327 -31.52667 -30.48332 -28.51653 -26.84139 -25.07055 -24.16018 -23.41208 -22.46713 -20.33051 -19.22054 -18.90765 -17.34975 -16.47399 -16.19854 -15.94409 -15.61627 -15.18842 -14.58571 -14.29015 -14.13016 -13.81301 -13.55018 -13.20824 -13.03795 -12.87832 -12.75287 -12.45324 -12.34037 -11.99864 -11.56940 -11.48152 -11.34376 -10.96029 -10.86827 -10.68006 -10.67109 -10.58024 -10.57373 -10.21728 -9.94244 -9.88502 -9.10945 -8.91073 -8.55755 -8.32479 -8.25152 -5.96567 -3.98625 2.71989 3.28882 3.39501 3.44670 3.52161 3.80545 3.89743 4.17551 4.39057 4.47744 4.55610 4.66706 4.90801 5.11411 5.19771 5.21039 5.27408 5.37028 5.37133 5.45954 5.56671 5.62283 5.72562 5.81014 5.97525 6.00316 6.02269 6.15685 6.31709 6.40198 6.64705 6.77048 6.86939 6.97321 7.01801 7.07892 7.53519 7.81176 8.05013 8.19120 8.40063 8.50057 9.10546 9.32488 9.66471 11.11263 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.005066 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.247302 B = 5525.426205 C = 6052.834367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C -0.076 4.076 4 C -0.120 4.120 5 C -0.151 4.151 6 C 0.110 3.890 7 N -0.738 5.738 8 C 0.503 3.497 9 O -0.506 6.506 10 C 0.127 3.873 11 H 0.119 0.881 12 N -0.728 5.728 13 C 0.523 3.477 14 O -0.534 6.534 15 C 0.031 3.969 16 H 0.051 0.949 17 C -0.131 4.131 18 C -0.497 4.497 19 H 0.074 0.926 20 C 0.057 3.943 21 N -0.898 5.898 22 Si 0.900 3.100 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.273 1.273 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.406 0.594 39 H 0.399 0.601 40 H 0.031 0.969 41 H 0.093 0.907 42 H 0.010 0.990 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 -11.870 -12.634 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.077 4.077 4 C -0.157 4.157 5 C -0.209 4.209 6 C -0.015 4.015 7 N -0.397 5.397 8 C 0.286 3.714 9 O -0.378 6.378 10 C 0.017 3.983 11 H 0.136 0.864 12 N -0.385 5.385 13 C 0.313 3.687 14 O -0.408 6.408 15 C 0.010 3.990 16 H 0.069 0.931 17 C -0.189 4.189 18 C -0.535 4.535 19 H 0.092 0.908 20 C -0.143 4.143 21 N -0.538 5.538 22 Si 0.728 3.272 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.198 1.198 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.244 0.756 39 H 0.236 0.764 40 H 0.051 0.949 41 H 0.111 0.889 42 H 0.029 0.971 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.235 -11.559 -11.409 20.951 hybrid contribution -0.027 0.531 0.351 0.637 sum 13.208 -11.027 -11.058 20.453 Atomic orbital electron populations 1.21853 0.94667 1.01884 1.03150 1.21523 0.97127 0.93269 1.02353 1.21845 0.94056 0.97048 0.94797 1.21565 1.02043 0.99163 0.92972 1.21838 1.00966 1.01012 0.97039 1.22213 0.94916 0.88809 0.95567 1.46200 1.13271 1.33341 1.46844 1.21565 0.85800 0.84568 0.79461 1.90792 1.84018 1.28492 1.34529 1.21429 0.85500 0.93179 0.98216 0.86376 1.46261 1.24482 1.55893 1.11913 1.22001 0.84305 0.78959 0.83427 1.90539 1.72992 1.53768 1.23501 1.18856 0.88126 0.93757 0.98281 0.93078 1.21733 1.02375 0.99911 0.94840 1.21150 1.07723 1.31606 0.93034 0.90783 1.24940 0.97127 0.95542 0.96683 1.69872 1.22076 1.35592 1.26243 0.86453 0.78206 0.78728 0.83834 1.20700 1.21365 1.19765 0.91429 0.92291 0.92744 0.90980 0.91497 0.90109 0.91428 0.92404 0.92653 0.92023 0.89920 0.90941 0.75558 0.76403 0.94941 0.88864 0.97074 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.30 37.16 0.35 -1.30 16 2 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 3 C -0.08 -0.74 0.37 -152.87 -0.06 -0.80 16 4 C -0.12 -1.08 3.46 -26.73 -0.09 -1.18 16 5 C -0.15 -1.00 9.40 37.16 0.35 -0.65 16 6 C 0.11 0.88 6.76 -3.12 -0.02 0.86 16 7 N -0.74 -8.26 6.24 -59.20 -0.37 -8.63 16 8 C 0.50 8.40 8.07 -10.86 -0.09 8.32 16 9 O -0.51 -11.33 18.02 5.56 0.10 -11.23 16 10 C 0.13 1.92 1.80 -67.94 -0.12 1.80 16 11 H 0.12 1.98 7.35 -51.93 -0.38 1.60 16 12 N -0.73 -12.92 4.23 -53.82 -0.23 -13.15 16 13 C 0.52 12.36 7.15 -10.99 -0.08 12.28 16 14 O -0.53 -14.58 15.14 5.56 0.08 -14.49 16 15 C 0.03 0.79 2.64 -92.93 -0.24 0.55 16 16 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 17 C -0.13 -2.98 8.87 37.15 0.33 -2.65 16 18 C -0.50 -14.54 8.37 -34.44 -0.29 -14.83 16 19 H 0.07 2.30 6.75 -52.48 -0.35 1.95 16 20 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 21 N -0.90 -25.67 11.32 55.43 0.63 -25.05 16 22 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H 0.07 0.92 6.80 -51.93 -0.35 0.57 16 27 H 0.06 0.57 6.78 -51.93 -0.35 0.22 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.46 6.56 -51.93 -0.34 0.12 16 30 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.08 0.79 5.43 -51.93 -0.28 0.51 16 32 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.31 6.37 -51.93 -0.33 -0.02 16 35 H 0.06 0.37 6.49 -51.92 -0.34 0.03 16 36 H 0.08 0.48 6.09 -51.93 -0.32 0.17 16 37 H 0.07 0.48 7.88 -51.93 -0.41 0.07 16 38 H 0.41 3.81 8.96 -40.82 -0.37 3.45 16 39 H 0.40 6.18 5.42 -40.82 -0.22 5.96 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 42 H 0.01 0.20 7.56 -51.93 -0.39 -0.20 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -35.46 333.41 -6.38 -41.84 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.42 Total: 5.30 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.18 Total: 2.94 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.03 Total: -46.82 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: 0.18 Total: -25.73 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.46 -6.38 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886729183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.337 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds