Wall clock time and date at job start Tue Mar 31 2020 02:15:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53005 * 109.47431 * 2 1
4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3
5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1
6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1
7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2
8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2
9 9 H 1.48491 * 109.47115 * 89.99974 * 8 6 4
10 10 H 1.48509 * 109.46780 * 210.00159 * 8 6 4
11 11 H 1.48497 * 109.46888 * 329.99916 * 8 6 4
12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3
13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1
14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2
15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12
16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12
17 17 H 1.08995 * 110.68031 * 59.29605 * 16 14 13
18 18 C 1.54892 * 110.75599 * 296.05551 * 16 14 13
19 19 C 1.54462 * 104.10205 * 203.89488 * 18 16 14
20 20 C 1.53873 * 106.68616 * 23.34678 * 19 18 16
21 21 H 1.08994 * 110.03663 * 240.87221 * 20 19 18
22 22 C 1.50705 * 110.07350 * 119.45838 * 20 19 18
23 23 N 1.34780 * 119.99388 * 62.81382 * 22 20 19
24 24 O 1.21279 * 120.00315 * 242.80888 * 22 20 19
25 25 C 1.54270 * 106.59579 * 0.15772 * 20 19 18
26 26 H 1.08996 * 109.47009 * 300.00615 * 1 2 3
27 27 H 1.09004 * 109.46783 * 60.00030 * 1 2 3
28 28 H 1.08998 * 109.47156 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.47011 * 180.02562 * 3 2 1
30 30 H 1.09004 * 109.46658 * 300.00048 * 3 2 1
31 31 H 1.08996 * 109.47069 * 59.99427 * 3 2 1
32 32 H 0.96999 * 120.00239 * 180.02562 * 7 6 4
33 33 H 1.09009 * 109.46730 * 179.97438 * 12 2 1
34 34 H 1.08998 * 109.46846 * 60.00315 * 12 2 1
35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 2
36 36 H 1.09002 * 110.48928 * 322.42867 * 18 16 14
37 37 H 1.09002 * 110.47931 * 85.06997 * 18 16 14
38 38 H 1.09001 * 109.86466 * 264.10222 * 19 18 16
39 39 H 1.09005 * 110.15958 * 142.75235 * 19 18 16
40 40 H 0.97000 * 120.00584 * 359.97438 * 23 22 20
41 41 H 0.96998 * 119.99771 * 179.97438 * 23 22 20
42 42 H 1.09008 * 110.48203 * 217.70816 * 25 20 19
43 43 H 1.08994 * 110.48929 * 95.06873 * 25 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7105 -1.2304
5 1 2.6532 -1.5886 -1.1312
6 6 1.6992 -0.2395 -2.4827
7 7 0.9436 0.8301 -2.6035
8 14 2.3225 -1.1198 -4.0079
9 1 1.3449 -2.1618 -4.4122
10 1 2.4874 -0.1404 -5.1120
11 1 3.6308 -1.7568 -3.7118
12 6 2.0399 -0.7212 1.2493
13 7 1.5516 -0.0305 2.4454
14 6 1.8818 -0.4877 3.6695
15 8 2.5790 -1.4738 3.7808
16 6 1.3845 0.2264 4.8999
17 1 0.2950 0.2492 4.9177
18 6 1.9649 1.6605 4.9744
19 6 1.9038 2.0136 6.4769
20 6 1.8859 0.6798 7.2439
21 1 0.9689 0.5967 7.8272
22 6 3.0851 0.5892 8.1521
23 7 3.2385 1.4754 9.1559
24 8 3.9119 -0.2812 7.9798
25 6 1.9407 -0.4391 6.1832
26 1 -0.3633 0.5139 0.8899
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 3.1301 1.4424 -0.0005
30 1 1.6767 1.9563 -0.8900
31 1 1.6767 1.9564 0.8899
32 1 0.7090 1.1613 -3.4845
33 1 3.1300 -0.7216 1.2491
34 1 1.6766 -1.7488 1.2493
35 1 0.9942 0.7584 2.3564
36 1 2.9965 1.6734 4.6226
37 1 1.3536 2.3501 4.3922
38 1 0.9956 2.5780 6.6881
39 1 2.7799 2.5964 6.7618
40 1 2.5773 2.1717 9.2936
41 1 4.0101 1.4169 9.7408
42 1 1.3118 -1.2782 6.4811
43 1 2.9683 -0.7677 6.0280
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000891520808.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:15:33
Heat of formation + Delta-G solvation = -104.254735 kcal
Electronic energy + Delta-G solvation = -22661.724966 eV
Core-core repulsion = 19319.536932 eV
Total energy + Delta-G solvation = -3342.188034 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.41080 -39.18479 -36.94959 -36.08748 -33.91650 -33.23660 -30.98591 -29.55703
-28.89882 -25.71757 -25.62934 -24.92772 -22.69203 -21.78078 -19.79862 -19.53679
-18.73719 -17.91449 -17.03020 -16.46869 -16.21668 -15.75447 -15.04555 -14.71974
-14.68332 -14.19241 -14.03467 -13.63348 -13.38662 -12.91524 -12.63165 -12.23113
-12.01392 -11.85675 -11.51341 -11.35603 -11.20899 -11.11650 -10.92743 -10.85119
-10.79888 -10.67609 -10.37082 -10.18947 -10.03625 -9.93260 -9.62051 -9.46373
-9.15065 -8.76921 -8.42420 -8.26340 -6.01216 -4.11029 2.44719 3.11903
3.24960 3.29261 3.36110 3.40554 3.80659 4.28450 4.34484 4.41889
4.60337 4.95299 5.15958 5.18060 5.25613 5.27643 5.34727 5.42228
5.53535 5.66729 5.82142 6.01723 6.10576 6.27337 6.36284 6.40499
6.52791 6.55817 6.81957 6.83192 6.95665 7.03444 7.06319 7.08919
7.37276 7.56712 7.70621 8.02173 8.05183 8.10314 8.19380 8.40301
8.78580 8.90273 9.54809 11.00176
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.040077 B = 0.003226 C = 0.003135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 698.493481 B = 8678.405831 C = 8930.519019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.056 3.944
3 C -0.130 4.130
4 C -0.506 4.506
5 H 0.057 0.943
6 C 0.066 3.934
7 N -0.887 5.887
8 Si 0.893 3.107
9 H -0.281 1.281
10 H -0.287 1.287
11 H -0.274 1.274
12 C 0.131 3.869
13 N -0.716 5.716
14 C 0.510 3.490
15 O -0.548 6.548
16 C -0.116 4.116
17 H 0.100 0.900
18 C -0.114 4.114
19 C -0.113 4.113
20 C -0.117 4.117
21 H 0.101 0.899
22 C 0.521 3.479
23 N -0.860 5.860
24 O -0.534 6.534
25 C -0.091 4.091
26 H 0.006 0.994
27 H 0.085 0.915
28 H 0.026 0.974
29 H 0.026 0.974
30 H 0.085 0.915
31 H 0.006 0.994
32 H 0.259 0.741
33 H 0.053 0.947
34 H 0.053 0.947
35 H 0.397 0.603
36 H 0.074 0.926
37 H 0.078 0.922
38 H 0.077 0.923
39 H 0.069 0.931
40 H 0.400 0.600
41 H 0.399 0.601
42 H 0.073 0.927
43 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.630 7.239 19.843 21.285
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.056 3.944
3 C -0.188 4.188
4 C -0.544 4.544
5 H 0.075 0.925
6 C -0.135 4.135
7 N -0.525 5.525
8 Si 0.721 3.279
9 H -0.207 1.207
10 H -0.213 1.213
11 H -0.199 1.199
12 C 0.008 3.992
13 N -0.367 5.367
14 C 0.295 3.705
15 O -0.427 6.427
16 C -0.137 4.137
17 H 0.118 0.882
18 C -0.151 4.151
19 C -0.150 4.150
20 C -0.138 4.138
21 H 0.119 0.881
22 C 0.306 3.694
23 N -0.423 5.423
24 O -0.409 6.409
25 C -0.130 4.130
26 H 0.025 0.975
27 H 0.104 0.896
28 H 0.045 0.955
29 H 0.045 0.955
30 H 0.104 0.896
31 H 0.025 0.975
32 H 0.070 0.930
33 H 0.072 0.928
34 H 0.072 0.928
35 H 0.232 0.768
36 H 0.093 0.907
37 H 0.097 0.903
38 H 0.095 0.905
39 H 0.088 0.912
40 H 0.228 0.772
41 H 0.230 0.770
42 H 0.091 0.909
43 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -1.770 6.001 19.474 20.454
hybrid contribution -0.052 0.321 -0.542 0.632
sum -1.822 6.322 18.932 20.043
Atomic orbital electron populations
1.21828 0.97802 0.99156 1.00034 1.18348 0.92752 0.92745 0.90604
1.21822 0.98568 0.98364 1.00025 1.21009 1.31398 1.12069 0.89942
0.92452 1.24875 0.94884 0.94908 0.98832 1.69801 1.36814 1.22748
1.23182 0.86578 0.79361 0.79387 0.82594 1.20722 1.21276 1.19892
1.21703 0.98119 0.95784 0.83561 1.46307 1.52572 1.31779 1.06007
1.20349 0.80738 0.84735 0.84686 1.90682 1.38388 1.26690 1.86890
1.22298 1.01542 0.95942 0.93936 0.88166 1.22370 1.02233 0.94699
0.95842 1.22158 1.02666 0.95143 0.95082 1.22003 0.96714 0.98204
0.96911 0.88110 1.20671 0.87511 0.80592 0.80645 1.43900 1.29519
1.34561 1.34343 1.90774 1.44264 1.34908 1.70990 1.22172 1.04697
0.95574 0.90509 0.97510 0.89622 0.95471 0.95481 0.89636 0.97500
0.93039 0.92826 0.92820 0.76820 0.90736 0.90300 0.90464 0.91176
0.77161 0.77028 0.90868 0.88133
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16
2 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16
3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16
4 C -0.51 -13.35 8.01 -34.44 -0.28 -13.63 16
5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16
6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16
7 N -0.89 -23.63 9.35 55.43 0.52 -23.11 16
8 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16
9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16
11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16
12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16
13 N -0.72 -12.71 4.94 -60.29 -0.30 -13.01 16
14 C 0.51 8.90 7.14 -10.99 -0.08 8.82 16
15 O -0.55 -11.93 15.75 5.55 0.09 -11.85 16
16 C -0.12 -1.43 3.28 -89.78 -0.29 -1.72 16
17 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16
18 C -0.11 -1.16 6.27 -24.97 -0.16 -1.31 16
19 C -0.11 -0.84 6.41 -25.51 -0.16 -1.00 16
20 C -0.12 -1.04 3.29 -90.65 -0.30 -1.33 16
21 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
22 C 0.52 5.51 7.18 -10.98 -0.08 5.43 16
23 N -0.86 -5.17 8.77 31.22 0.27 -4.90 16
24 O -0.53 -8.46 16.24 5.56 0.09 -8.37 16
25 C -0.09 -1.16 5.21 -25.07 -0.13 -1.29 16
26 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16
27 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16
28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16
31 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16
32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16
33 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16
34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16
35 H 0.40 6.25 6.16 -40.82 -0.25 6.00 16
36 H 0.07 0.90 8.04 -51.93 -0.42 0.49 16
37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.07 0.50 7.62 -51.93 -0.40 0.10 16
40 H 0.40 1.12 8.83 -40.82 -0.36 0.76 16
41 H 0.40 2.13 8.93 -40.82 -0.36 1.76 16
42 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16
43 H 0.10 1.68 6.22 -51.93 -0.32 1.36 16
LS Contribution 340.02 15.07 5.12 5.12
Total: -1.00 -32.70 340.02 -7.09 -39.79
By element:
Atomic # 1 Polarization: 12.90 SS G_CDS: -6.80 Total: 6.09 kcal
Atomic # 6 Polarization: -4.54 SS G_CDS: -1.07 Total: -5.61 kcal
Atomic # 7 Polarization: -41.51 SS G_CDS: 0.49 Total: -41.02 kcal
Atomic # 8 Polarization: -20.39 SS G_CDS: 0.18 Total: -20.22 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -32.70 -7.09 -39.79 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000891520808.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.466 kcal
(2) G-P(sol) polarization free energy of solvation -32.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.163 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.255 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds