Wall clock time and date at job start Tue Mar 31 2020 02:15:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53005 * 109.47431 * 2 1
4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3
5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1
6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1
7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2
8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2
9 9 H 1.48491 * 109.47115 * 89.99974 * 8 6 4
10 10 H 1.48509 * 109.46780 * 210.00159 * 8 6 4
11 11 H 1.48497 * 109.46888 * 329.99916 * 8 6 4
12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3
13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1
14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2
15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12
16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12
17 17 H 1.08995 * 110.68031 * 59.29605 * 16 14 13
18 18 C 1.54892 * 110.75599 * 296.05551 * 16 14 13
19 19 C 1.54462 * 104.10205 * 203.89488 * 18 16 14
20 20 C 1.53873 * 106.68616 * 23.34678 * 19 18 16
21 21 H 1.08994 * 110.03663 * 240.87221 * 20 19 18
22 22 C 1.50705 * 110.07350 * 119.45838 * 20 19 18
23 23 N 1.34780 * 119.99388 * 62.81382 * 22 20 19
24 24 O 1.21279 * 120.00315 * 242.80888 * 22 20 19
25 25 C 1.54270 * 106.59579 * 0.15772 * 20 19 18
26 26 H 1.08996 * 109.47009 * 300.00615 * 1 2 3
27 27 H 1.09004 * 109.46783 * 60.00030 * 1 2 3
28 28 H 1.08998 * 109.47156 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.47011 * 180.02562 * 3 2 1
30 30 H 1.09004 * 109.46658 * 300.00048 * 3 2 1
31 31 H 1.08996 * 109.47069 * 59.99427 * 3 2 1
32 32 H 0.96999 * 120.00239 * 180.02562 * 7 6 4
33 33 H 1.09009 * 109.46730 * 179.97438 * 12 2 1
34 34 H 1.08998 * 109.46846 * 60.00315 * 12 2 1
35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 2
36 36 H 1.09002 * 110.48928 * 322.42867 * 18 16 14
37 37 H 1.09002 * 110.47931 * 85.06997 * 18 16 14
38 38 H 1.09001 * 109.86466 * 264.10222 * 19 18 16
39 39 H 1.09005 * 110.15958 * 142.75235 * 19 18 16
40 40 H 0.97000 * 120.00584 * 359.97438 * 23 22 20
41 41 H 0.96998 * 119.99771 * 179.97438 * 23 22 20
42 42 H 1.09008 * 110.48203 * 217.70816 * 25 20 19
43 43 H 1.08994 * 110.48929 * 95.06873 * 25 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7105 -1.2304
5 1 2.6532 -1.5886 -1.1312
6 6 1.6992 -0.2395 -2.4827
7 7 0.9436 0.8301 -2.6035
8 14 2.3225 -1.1198 -4.0079
9 1 1.3449 -2.1618 -4.4122
10 1 2.4874 -0.1404 -5.1120
11 1 3.6308 -1.7568 -3.7118
12 6 2.0399 -0.7212 1.2493
13 7 1.5516 -0.0305 2.4454
14 6 1.8818 -0.4877 3.6695
15 8 2.5790 -1.4738 3.7808
16 6 1.3845 0.2264 4.8999
17 1 0.2950 0.2492 4.9177
18 6 1.9649 1.6605 4.9744
19 6 1.9038 2.0136 6.4769
20 6 1.8859 0.6798 7.2439
21 1 0.9689 0.5967 7.8272
22 6 3.0851 0.5892 8.1521
23 7 3.2385 1.4754 9.1559
24 8 3.9119 -0.2812 7.9798
25 6 1.9407 -0.4391 6.1832
26 1 -0.3633 0.5139 0.8899
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 3.1301 1.4424 -0.0005
30 1 1.6767 1.9563 -0.8900
31 1 1.6767 1.9564 0.8899
32 1 0.7090 1.1613 -3.4845
33 1 3.1300 -0.7216 1.2491
34 1 1.6766 -1.7488 1.2493
35 1 0.9942 0.7584 2.3564
36 1 2.9965 1.6734 4.6226
37 1 1.3536 2.3501 4.3922
38 1 0.9956 2.5780 6.6881
39 1 2.7799 2.5964 6.7618
40 1 2.5773 2.1717 9.2936
41 1 4.0101 1.4169 9.7408
42 1 1.3118 -1.2782 6.4811
43 1 2.9683 -0.7677 6.0280
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000891520808.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:15:33
Heat of formation + Delta-G solvation = -129.035160 kcal
Electronic energy + Delta-G solvation = -22662.799526 eV
Core-core repulsion = 19319.536932 eV
Total energy + Delta-G solvation = -3343.262594 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.40921 -40.42733 -38.33150 -37.46581 -34.99030 -34.65013 -32.78489 -30.55194
-29.70825 -27.54961 -27.45793 -26.71890 -23.70027 -22.76460 -20.88787 -20.62156
-20.41398 -18.87128 -17.98058 -17.69513 -17.36071 -17.09811 -16.61631 -16.45747
-15.98935 -15.25636 -15.19775 -14.80650 -14.63467 -14.54030 -14.15243 -13.98359
-13.22449 -13.11882 -13.03525 -12.70386 -12.66703 -12.59136 -12.25496 -12.20247
-12.13880 -12.05108 -11.76507 -11.64967 -11.47879 -11.24573 -10.88032 -10.75291
-10.61654 -10.61249 -10.39834 -9.91577 -8.03012 -6.18507 1.41343 1.44209
1.52600 1.66971 1.74049 2.31845 2.48704 2.70247 3.20338 3.44162
3.52016 3.89247 4.22205 4.26819 4.36805 4.43680 4.48371 4.50699
4.54638 4.62723 4.72575 4.78031 4.96046 5.00520 5.07051 5.12002
5.12995 5.20341 5.25652 5.34748 5.37523 5.42541 5.62909 5.66979
5.68474 5.94494 6.16770 6.22344 6.44093 6.52730 6.73039 6.85351
7.39005 7.41491 7.49105 8.95770
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.040077 B = 0.003226 C = 0.003135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 698.493481 B = 8678.405831 C = 8930.519019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.053 3.947
3 C -0.120 4.120
4 C -0.532 4.532
5 H 0.040 0.960
6 C 0.030 3.970
7 N -0.897 5.897
8 Si 0.943 3.057
9 H -0.278 1.278
10 H -0.280 1.280
11 H -0.279 1.279
12 C 0.146 3.854
13 N -0.707 5.707
14 C 0.504 3.496
15 O -0.599 6.599
16 C -0.106 4.106
17 H 0.138 0.862
18 C -0.115 4.115
19 C -0.102 4.102
20 C -0.107 4.107
21 H 0.141 0.859
22 C 0.514 3.486
23 N -0.835 5.835
24 O -0.600 6.600
25 C -0.098 4.098
26 H 0.041 0.959
27 H 0.063 0.937
28 H 0.016 0.984
29 H 0.014 0.986
30 H 0.063 0.937
31 H 0.041 0.959
32 H 0.261 0.739
33 H 0.030 0.970
34 H 0.034 0.966
35 H 0.411 0.589
36 H 0.044 0.956
37 H 0.104 0.896
38 H 0.120 0.880
39 H 0.074 0.926
40 H 0.420 0.580
41 H 0.405 0.595
42 H 0.072 0.928
43 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.658 9.662 21.587 24.105
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.052 3.948
3 C -0.177 4.177
4 C -0.571 4.571
5 H 0.058 0.942
6 C -0.169 4.169
7 N -0.536 5.536
8 Si 0.770 3.230
9 H -0.204 1.204
10 H -0.206 1.206
11 H -0.204 1.204
12 C 0.022 3.978
13 N -0.358 5.358
14 C 0.292 3.708
15 O -0.481 6.481
16 C -0.126 4.126
17 H 0.156 0.844
18 C -0.153 4.153
19 C -0.140 4.140
20 C -0.128 4.128
21 H 0.159 0.841
22 C 0.300 3.700
23 N -0.398 5.398
24 O -0.481 6.481
25 C -0.136 4.136
26 H 0.060 0.940
27 H 0.082 0.918
28 H 0.035 0.965
29 H 0.033 0.967
30 H 0.082 0.918
31 H 0.060 0.940
32 H 0.071 0.929
33 H 0.049 0.951
34 H 0.052 0.948
35 H 0.248 0.752
36 H 0.063 0.937
37 H 0.123 0.877
38 H 0.139 0.861
39 H 0.093 0.907
40 H 0.252 0.748
41 H 0.235 0.765
42 H 0.090 0.910
43 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -3.842 8.507 21.256 23.215
hybrid contribution 0.611 -0.448 -1.046 1.292
sum -3.231 8.060 20.210 21.996
Atomic orbital electron populations
1.21667 0.96849 0.98657 1.00628 1.18340 0.93421 0.93045 0.89985
1.21662 0.97717 0.97745 1.00618 1.21294 1.31794 1.12160 0.91842
0.94167 1.25415 0.95138 0.95582 1.00814 1.69891 1.36938 1.23115
1.23634 0.85793 0.78588 0.78584 0.80038 1.20427 1.20580 1.20385
1.21239 0.96625 0.95092 0.84827 1.46110 1.52656 1.31936 1.05109
1.21384 0.79490 0.84100 0.85812 1.90665 1.40602 1.29192 1.87606
1.22367 1.03455 0.96464 0.90361 0.84386 1.22441 1.00814 0.93468
0.98547 1.22191 1.05116 0.94399 0.92274 1.22011 0.97464 0.97357
0.95998 0.84107 1.21077 0.87336 0.80230 0.81348 1.43698 1.29878
1.33623 1.32631 1.90762 1.46604 1.37844 1.72891 1.22110 1.01703
0.97352 0.92448 0.94004 0.91779 0.96483 0.96685 0.91770 0.94005
0.92947 0.95134 0.94774 0.75186 0.93658 0.87735 0.86123 0.90722
0.74770 0.76450 0.90970 0.93087
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16
2 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16
3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16
4 C -0.53 -28.72 8.01 25.60 0.21 -28.52 16
5 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16
6 C 0.03 1.62 5.15 84.65 0.44 2.05 16
7 N -0.90 -47.72 9.35 21.45 0.20 -47.52 16
8 Si 0.94 43.10 29.54 68.60 2.03 45.13 16
9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16
12 C 0.15 6.46 4.50 86.38 0.39 6.84 16
13 N -0.71 -24.48 4.94 -463.05 -2.29 -26.77 16
14 C 0.50 17.54 7.14 87.66 0.63 18.17 16
15 O -0.60 -27.30 15.75 -3.04 -0.05 -27.35 16
16 C -0.11 -2.36 3.28 -10.25 -0.03 -2.40 16
17 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16
18 C -0.11 -1.97 6.27 31.74 0.20 -1.77 16
19 C -0.10 -1.04 6.41 31.39 0.20 -0.84 16
20 C -0.11 -1.56 3.29 -10.81 -0.04 -1.60 16
21 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16
22 C 0.51 10.13 7.18 87.66 0.63 10.76 16
23 N -0.83 -7.77 8.77 -173.53 -1.52 -9.29 16
24 O -0.60 -19.68 16.24 -3.03 -0.05 -19.73 16
25 C -0.10 -2.42 5.21 31.67 0.16 -2.25 16
26 H 0.04 1.50 6.86 -2.39 -0.02 1.48 16
27 H 0.06 3.12 6.07 -2.38 -0.01 3.11 16
28 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16
30 H 0.06 3.14 6.07 -2.38 -0.01 3.12 16
31 H 0.04 1.50 6.86 -2.39 -0.02 1.49 16
32 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16
33 H 0.03 1.46 8.14 -2.38 -0.02 1.45 16
34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16
35 H 0.41 11.79 6.16 -92.71 -0.57 11.21 16
36 H 0.04 1.05 8.04 -2.39 -0.02 1.03 16
37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
38 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16
39 H 0.07 0.75 7.62 -2.38 -0.02 0.73 16
40 H 0.42 0.56 8.83 -92.71 -0.82 -0.26 16
41 H 0.40 3.49 8.93 -92.71 -0.83 2.66 16
42 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16
43 H 0.05 1.81 6.22 -2.39 -0.01 1.79 16
Total: -1.00 -76.93 340.02 1.06 -75.87
By element:
Atomic # 1 Polarization: 17.37 SS G_CDS: -1.18 Total: 16.19 kcal
Atomic # 6 Polarization: -10.45 SS G_CDS: 3.92 Total: -6.53 kcal
Atomic # 7 Polarization: -79.98 SS G_CDS: -3.61 Total: -83.58 kcal
Atomic # 8 Polarization: -46.98 SS G_CDS: -0.10 Total: -47.08 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal
Total: -76.93 1.06 -75.87 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000891520808.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.163 kcal
(2) G-P(sol) polarization free energy of solvation -76.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.035 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds