Wall clock time and date at job start Tue Mar 31 2020 01:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 112.85176 * 2 1 4 4 C 1.53781 * 113.61561 * 228.68580 * 2 1 3 5 5 H 1.08997 * 113.61152 * 105.39246 * 4 2 1 6 6 N 1.46497 * 113.61764 * 334.57189 * 4 2 1 7 7 C 1.34771 * 120.00057 * 155.00142 * 6 4 2 8 8 O 1.21684 * 120.00352 * 359.97438 * 7 6 4 9 9 C 1.46378 * 120.00186 * 180.02562 * 7 6 4 10 10 H 1.08004 * 119.99817 * 359.97438 * 9 7 6 11 11 C 1.40043 * 120.00407 * 179.97438 * 9 7 6 12 12 N 1.30677 * 119.99819 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 120.00186 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47516 * 89.99709 * 13 11 9 15 15 H 1.48503 * 109.47036 * 209.99970 * 13 11 9 16 16 H 1.48506 * 109.47014 * 329.99829 * 13 11 9 17 17 C 1.53783 * 87.08263 * 220.02027 * 4 2 1 18 18 C 1.53781 * 87.08061 * 25.43415 * 17 4 2 19 19 H 1.09000 * 113.68858 * 89.12329 * 18 17 4 20 20 N 1.46902 * 113.61796 * 220.01608 * 18 17 4 21 21 C 1.47014 * 111.00045 * 286.74055 * 20 18 17 22 22 C 1.53094 * 109.29153 * 177.62913 * 21 20 18 23 23 O 1.43012 * 109.26475 * 56.82493 * 22 21 20 24 24 C 1.43022 * 113.73585 * 301.33106 * 23 22 21 25 25 C 1.47018 * 111.03732 * 163.07738 * 20 18 17 26 26 H 1.08994 * 109.47584 * 288.80662 * 1 2 3 27 27 H 1.09007 * 109.46926 * 48.81253 * 1 2 3 28 28 H 1.09003 * 109.46844 * 168.80427 * 1 2 3 29 29 H 1.09001 * 109.47408 * 184.86536 * 3 2 1 30 30 H 1.09005 * 109.47177 * 304.86217 * 3 2 1 31 31 H 1.08995 * 109.47810 * 64.86133 * 3 2 1 32 32 H 0.97000 * 119.99882 * 334.99622 * 6 4 2 33 33 H 0.96996 * 119.99787 * 180.02562 * 12 11 9 34 34 H 1.08998 * 113.61905 * 270.88636 * 17 4 2 35 35 H 1.08998 * 113.61287 * 139.98015 * 17 4 2 36 36 H 1.09000 * 109.50789 * 57.66669 * 21 20 18 37 37 H 1.09007 * 109.50272 * 297.58022 * 21 20 18 38 38 H 1.09003 * 109.50690 * 176.75925 * 22 21 20 39 39 H 1.09003 * 109.50585 * 296.84492 * 22 21 20 40 40 H 1.08998 * 109.50238 * 178.59791 * 24 23 22 41 41 H 1.08991 * 109.50281 * 298.68902 * 24 23 22 42 42 H 1.09006 * 109.47015 * 62.41758 * 25 20 18 43 43 H 1.09005 * 109.54097 * 302.33072 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4098 0.0000 4 6 2.1460 -0.9302 -1.0583 5 1 2.5638 -0.4010 -1.9147 6 7 1.2704 -2.0387 -1.4465 7 6 1.4126 -2.6184 -2.6548 8 8 2.2679 -2.2208 -3.4236 9 6 0.5373 -3.7257 -3.0429 10 1 -0.2221 -4.0784 -2.3607 11 6 0.6846 -4.3277 -4.2987 12 7 1.6032 -3.9007 -5.1243 13 14 -0.4328 -5.7402 -4.7942 14 1 -1.6408 -5.2023 -5.4698 15 1 0.2931 -6.6432 -5.7231 16 1 -0.8390 -6.4982 -3.5835 17 6 3.1923 -1.3136 0.0015 18 6 2.1460 -0.9280 1.0604 19 1 1.4939 -1.7513 1.3518 20 7 2.7106 -0.2122 2.2123 21 6 3.4723 -1.1244 3.0777 22 6 4.0910 -0.3294 4.2304 23 8 3.0554 0.3534 4.9421 24 6 2.2944 1.2516 4.1298 25 6 1.6574 0.4725 2.9761 26 1 -0.3634 0.3313 0.9727 27 1 -0.3633 0.6768 -0.7734 28 1 -0.3633 -1.0081 -0.1995 29 1 3.2088 1.3471 -0.0872 30 1 1.7239 1.9728 -0.8433 31 1 1.8630 1.9143 0.9302 32 1 0.5884 -2.3555 -0.8338 33 1 1.7049 -4.3175 -5.9942 34 1 4.0711 -0.6688 0.0009 35 1 3.4443 -2.3741 0.0026 36 1 4.2631 -1.6006 2.4981 37 1 2.8051 -1.8875 3.4788 38 1 4.6086 -1.0106 4.9059 39 1 4.7998 0.3969 3.8324 40 1 1.5125 1.7136 4.7325 41 1 2.9502 2.0246 3.7295 42 1 0.9606 -0.2646 3.3755 43 1 1.1228 1.1620 2.3226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911844641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:16 Heat of formation + Delta-G solvation = -55.795772 kcal Electronic energy + Delta-G solvation = -23404.232781 eV Core-core repulsion = 20064.146085 eV Total energy + Delta-G solvation = -3340.086696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56114 -38.85734 -36.67479 -34.62785 -32.58515 -31.77249 -31.26277 -30.09700 -27.38416 -27.10702 -26.04290 -24.02621 -23.00547 -22.05655 -20.46564 -19.89008 -17.99056 -17.05515 -16.55365 -16.20764 -15.42303 -15.36593 -15.10410 -14.99223 -14.68315 -14.47252 -13.83259 -13.56027 -13.21413 -13.07382 -12.43669 -12.33435 -12.19130 -12.11563 -11.87084 -11.63832 -11.56859 -11.42713 -11.21771 -11.08795 -10.89402 -10.63091 -10.47721 -10.44569 -10.19257 -10.08521 -9.71781 -9.42634 -8.86296 -8.38597 -7.62772 -7.49591 -6.19736 -4.65652 3.12924 3.19903 3.23058 3.65260 3.83371 4.08835 4.51863 4.56310 4.65960 4.83519 4.88602 4.93236 5.01315 5.14384 5.15796 5.30376 5.32090 5.42423 5.49157 5.51978 5.63865 5.68066 5.75157 5.81356 5.85890 5.91907 6.01871 6.09267 6.21121 6.23718 6.31610 6.37636 6.57495 6.69406 6.74648 6.91123 7.02128 7.11471 7.41958 7.91457 8.11788 8.32442 9.01309 9.52141 10.59190 10.77943 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031666 B = 0.003796 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.018744 B = 7375.325137 C = 7514.351497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.111 4.111 4 C 0.151 3.849 5 H 0.093 0.907 6 N -0.747 5.747 7 C 0.556 3.444 8 O -0.578 6.578 9 C -0.546 4.546 10 H 0.066 0.934 11 C 0.088 3.912 12 N -0.767 5.767 13 Si 0.907 3.093 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.265 1.265 17 C -0.142 4.142 18 C 0.064 3.936 19 H 0.063 0.937 20 N -0.519 5.519 21 C 0.017 3.983 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.064 3.936 25 C 0.013 3.987 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.379 0.621 33 H 0.268 0.732 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 8.277 16.396 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C -0.169 4.169 4 C 0.043 3.957 5 H 0.111 0.889 6 N -0.401 5.401 7 C 0.360 3.640 8 O -0.461 6.461 9 C -0.583 4.583 10 H 0.084 0.916 11 C -0.132 4.132 12 N -0.396 5.396 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.190 1.190 17 C -0.181 4.181 18 C -0.044 4.044 19 H 0.081 0.919 20 N -0.244 5.244 21 C -0.111 4.111 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.013 4.013 25 C -0.115 4.115 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.212 0.788 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.498 8.860 15.637 18.035 hybrid contribution -1.437 -1.579 0.133 2.139 sum 0.061 7.280 15.771 17.370 Atomic orbital electron populations 1.21730 0.94489 1.02548 1.00652 1.22315 0.95064 0.95605 0.95855 1.21427 1.01017 0.93641 1.00806 1.21331 0.90690 0.88738 0.94973 0.88869 1.45975 1.38065 1.36369 1.19663 1.18220 0.84286 0.82714 0.78733 1.90597 1.37983 1.66044 1.51467 1.20871 1.18732 1.17109 1.01586 0.91570 1.25689 0.94647 0.96904 0.95910 1.70020 1.27188 1.35929 1.06437 0.86391 0.80407 0.81087 0.78971 1.19745 1.20450 1.18970 1.23492 0.97663 1.01402 0.95591 1.23312 0.97181 0.95268 0.88627 0.91937 1.62438 1.24403 1.29500 1.08057 1.22725 0.98807 0.94759 0.94807 1.22654 0.89655 0.95539 0.93340 1.87960 1.47812 1.58780 1.36245 1.22663 0.95097 0.91680 0.91852 1.22858 0.93965 0.98790 0.95863 0.93485 0.92368 0.91944 0.92040 0.93085 0.92447 0.78824 0.92112 0.89528 0.91544 0.89489 0.94273 0.88761 0.92330 0.88836 0.92360 0.94389 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.96 37.16 0.33 -1.54 16 2 C -0.09 -1.25 0.74 -153.70 -0.11 -1.36 16 3 C -0.11 -1.42 8.27 37.15 0.31 -1.12 16 4 C 0.15 2.85 3.78 -67.12 -0.25 2.59 16 5 H 0.09 2.03 7.42 -51.93 -0.39 1.65 16 6 N -0.75 -16.30 4.69 -54.43 -0.26 -16.55 16 7 C 0.56 15.61 7.75 -12.99 -0.10 15.51 16 8 O -0.58 -18.56 14.62 5.20 0.08 -18.49 16 9 C -0.55 -15.30 9.54 -35.63 -0.34 -15.64 16 10 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 11 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 12 N -0.77 -22.93 11.83 55.55 0.66 -22.27 16 13 Si 0.91 20.07 29.56 -169.99 -5.02 15.05 16 14 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 C -0.14 -2.31 6.74 -25.92 -0.17 -2.48 16 18 C 0.06 0.89 2.50 -66.90 -0.17 0.72 16 19 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 20 N -0.52 -6.24 3.95 -225.34 -0.89 -7.13 16 21 C 0.02 0.20 5.58 -3.71 -0.02 0.17 16 22 C 0.07 0.65 7.01 37.21 0.26 0.91 16 23 O -0.39 -4.50 10.83 -35.23 -0.38 -4.88 16 24 C 0.06 0.62 7.01 37.21 0.26 0.89 16 25 C 0.01 0.14 5.04 -3.71 -0.02 0.12 16 26 H 0.05 0.55 7.26 -51.93 -0.38 0.17 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.92 5.89 -51.93 -0.31 0.62 16 29 H 0.06 0.81 7.31 -51.93 -0.38 0.43 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.64 5.73 -51.93 -0.30 0.34 16 32 H 0.38 7.41 6.87 -40.82 -0.28 7.13 16 33 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 34 H 0.09 1.34 7.61 -51.93 -0.40 0.94 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 0.97 7.71 -51.93 -0.40 0.57 16 37 H 0.04 0.47 8.14 -51.92 -0.42 0.04 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.95 4.74 -51.93 -0.25 0.70 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -33.13 333.27 -7.76 -40.89 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.84 Total: 7.23 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.12 Total: 1.13 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.49 Total: -45.95 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.31 Total: -23.37 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.13 -7.76 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911844641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.906 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds