Wall clock time and date at job start Tue Mar 31 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47103 * 2 1 4 4 O 1.21279 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.47146 * 120.98900 * 0.02562 * 5 3 2 7 7 C 1.53299 * 108.37377 * 129.38717 * 6 5 3 8 8 O 1.42963 * 109.22750 * 52.35418 * 7 6 5 9 9 C 1.42898 * 114.20625 * 297.50674 * 8 7 6 10 10 C 1.52984 * 109.56021 * 302.52569 * 9 8 7 11 11 C 1.53196 * 109.34879 * 300.95626 * 10 9 8 12 12 N 1.46926 * 108.77911 * 305.42987 * 11 10 9 13 13 C 1.36933 * 120.64668 * 233.64883 * 12 11 10 14 14 H 1.07998 * 119.99597 * 27.58632 * 13 12 11 15 15 C 1.38812 * 120.00097 * 207.59149 * 13 12 11 16 16 N 1.31612 * 120.00175 * 17.96253 * 15 13 12 17 17 Si 1.86804 * 119.99737 * 197.95385 * 15 13 12 18 18 H 1.48500 * 109.47294 * 265.36303 * 17 15 13 19 19 H 1.48496 * 109.47230 * 25.36846 * 17 15 13 20 20 H 1.48504 * 109.46700 * 145.36560 * 17 15 13 21 21 C 1.46938 * 118.71387 * 53.92585 * 12 11 10 22 22 C 1.53000 * 109.54901 * 182.22596 * 9 8 7 23 23 C 1.47152 * 120.98615 * 180.02562 * 5 3 2 24 24 H 1.09000 * 109.46666 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46865 * 299.99749 * 1 2 3 26 26 H 1.08993 * 109.47051 * 60.00100 * 1 2 3 27 27 H 1.08995 * 109.47507 * 240.00208 * 2 1 3 28 28 H 1.09003 * 109.47049 * 119.99815 * 2 1 3 29 29 H 1.09004 * 109.68878 * 249.10810 * 6 5 3 30 30 H 1.09000 * 109.68417 * 9.66800 * 6 5 3 31 31 H 1.08999 * 109.51680 * 172.28258 * 7 6 5 32 32 H 1.09005 * 109.51118 * 292.38099 * 7 6 5 33 33 H 1.09001 * 109.49185 * 180.99702 * 10 9 8 34 34 H 1.09000 * 109.51583 * 60.93644 * 10 9 8 35 35 H 1.08998 * 109.58986 * 185.63923 * 11 10 9 36 36 H 1.09005 * 109.70311 * 65.29011 * 11 10 9 37 37 H 0.97004 * 120.00500 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.58803 * 65.84531 * 21 12 11 39 39 H 1.09000 * 109.58639 * 186.28284 * 21 12 11 40 40 H 1.09000 * 109.49411 * 178.99880 * 22 9 8 41 41 H 1.08998 * 109.49203 * 299.05378 * 22 9 8 42 42 H 1.09003 * 109.68039 * 110.76239 * 23 5 3 43 43 H 1.09000 * 109.67766 * 350.22476 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3328 0.5654 -0.0017 7 6 5.3438 0.8162 -1.1264 8 8 5.8778 2.1357 -0.9939 9 6 4.9071 3.1764 -1.1227 10 6 4.2058 3.0579 -2.4772 11 6 5.2455 3.1603 -3.5977 12 7 6.0112 4.4016 -3.4204 13 6 6.1244 5.3042 -4.4439 14 1 5.3495 5.3708 -5.1932 15 6 7.2352 6.1333 -4.5186 16 7 8.3261 5.8341 -3.8458 17 14 7.1817 7.6736 -5.5741 18 1 7.7464 7.3749 -6.9147 19 1 5.7747 8.1257 -5.7191 20 1 7.9817 8.7447 -4.9275 21 6 6.6584 4.6530 -2.1254 22 6 5.5986 4.5372 -1.0192 23 6 3.8717 3.0459 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.8508 0.5325 0.9569 30 1 3.8186 -0.3800 -0.1743 31 1 6.1519 0.0879 -1.0588 32 1 4.8462 0.7193 -2.0915 33 1 3.4781 3.8626 -2.5816 34 1 3.6963 2.0964 -2.5405 35 1 4.7411 3.1769 -4.5638 36 1 5.9200 2.3052 -3.5524 37 1 9.1023 6.4137 -3.8976 38 1 7.4445 3.9161 -1.9606 39 1 7.0869 5.6552 -2.1194 40 1 4.8600 5.3303 -1.1353 41 1 6.0794 4.6277 -0.0452 42 1 4.3414 3.2621 0.9596 43 1 3.0523 3.7433 -0.1734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948992891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:37 Heat of formation + Delta-G solvation = -54.448858 kcal Electronic energy + Delta-G solvation = -23998.972116 eV Core-core repulsion = 20658.943827 eV Total energy + Delta-G solvation = -3340.028289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64332 -38.82592 -36.19790 -34.55694 -33.29126 -32.65189 -31.13515 -29.76341 -28.79097 -27.19285 -24.77192 -23.65080 -23.31235 -22.14735 -20.81573 -19.06021 -18.82295 -17.42920 -16.88504 -16.09921 -15.88957 -15.31817 -15.00046 -14.72876 -14.55416 -14.09763 -13.82223 -13.58736 -13.29537 -13.11085 -12.82375 -12.69772 -12.24837 -12.11128 -11.79045 -11.63917 -11.49347 -11.37636 -11.30861 -11.03225 -10.80363 -10.62952 -10.37153 -10.25456 -10.09771 -9.82985 -9.76160 -9.49473 -9.32372 -8.41628 -8.39173 -6.61634 -5.74349 -3.15416 2.57912 2.87217 3.39972 3.47378 3.50387 3.99775 4.36472 4.53611 4.76105 4.80602 4.86777 4.92381 5.10374 5.12915 5.24251 5.31572 5.41393 5.44573 5.55866 5.58927 5.68915 5.70725 5.73205 5.82480 5.91944 6.02151 6.07779 6.29981 6.32555 6.36657 6.55153 6.58271 6.68588 6.76779 7.02621 7.32355 7.43512 7.58215 7.76297 7.83956 8.12074 8.49261 9.26227 9.90033 10.47740 11.33964 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.004462 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.306434 B = 6273.673106 C = 6583.237919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.541 6.541 5 N -0.612 5.612 6 C 0.073 3.927 7 C 0.043 3.957 8 O -0.356 6.356 9 C 0.118 3.882 10 C -0.151 4.151 11 C 0.152 3.848 12 N -0.591 5.591 13 C -0.252 4.252 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.288 1.288 19 H -0.279 1.279 20 H -0.289 1.289 21 C 0.178 3.822 22 C -0.127 4.127 23 C 0.088 3.912 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.253 0.747 38 H 0.028 0.972 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 -13.473 9.494 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.419 6.419 5 N -0.347 5.347 6 C -0.050 4.050 7 C -0.035 4.035 8 O -0.275 6.275 9 C 0.078 3.922 10 C -0.191 4.191 11 C 0.026 3.974 12 N -0.313 5.313 13 C -0.382 4.382 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.729 3.271 18 H -0.215 1.215 19 H -0.205 1.205 20 H -0.216 1.216 21 C 0.052 3.948 22 C -0.167 4.167 23 C -0.035 4.035 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.373 -12.837 9.518 18.526 hybrid contribution -0.116 0.565 -0.504 0.766 sum -9.489 -12.272 9.014 17.941 Atomic orbital electron populations 1.21532 0.93024 1.01434 1.03417 1.21656 0.98597 0.94040 1.04027 1.20768 0.81531 0.91875 0.75777 1.90692 1.54635 1.46637 1.49900 1.48187 1.05476 1.07578 1.73422 1.22492 0.91582 0.90072 1.00892 1.22900 0.97047 0.86608 0.96983 1.88078 1.33810 1.12895 1.92668 1.21771 0.87989 0.89423 0.93015 1.22507 0.99478 1.00661 0.96436 1.20767 0.92075 0.89949 0.94645 1.44061 1.59556 1.17727 1.10005 1.19184 1.01519 1.12312 1.05172 0.91810 1.25007 0.94587 1.00661 0.99357 1.70048 1.01987 1.37230 1.45282 0.86325 0.77477 0.83391 0.79867 1.21535 1.20457 1.21555 1.20780 0.90627 1.01876 0.81470 1.22279 1.00864 0.92234 1.01293 1.22476 0.98436 0.82943 0.99597 0.92160 0.92053 0.91904 0.88973 0.89102 0.90620 0.89202 0.88125 0.92287 0.91417 0.93153 0.93162 0.96180 0.93693 0.95396 0.89489 0.91130 0.92391 0.91186 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 37.16 0.34 -0.88 16 2 C -0.14 -1.27 4.79 -27.88 -0.13 -1.40 16 3 C 0.51 6.86 7.71 -10.99 -0.08 6.77 16 4 O -0.54 -9.37 15.45 5.56 0.09 -9.29 16 5 N -0.61 -8.00 2.52 -172.29 -0.43 -8.43 16 6 C 0.07 0.73 6.54 -3.53 -0.02 0.71 16 7 C 0.04 0.53 6.60 37.31 0.25 0.77 16 8 O -0.36 -6.08 9.00 -35.23 -0.32 -6.39 16 9 C 0.12 2.04 0.68 -90.48 -0.06 1.98 16 10 C -0.15 -2.77 4.33 -26.64 -0.12 -2.89 16 11 C 0.15 3.30 6.28 -3.71 -0.02 3.27 16 12 N -0.59 -15.07 2.99 -172.04 -0.51 -15.59 16 13 C -0.25 -7.03 9.59 -15.06 -0.14 -7.18 16 14 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 15 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 16 N -0.90 -26.38 11.20 55.49 0.62 -25.76 16 17 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 C 0.18 4.32 5.11 -3.48 -0.02 4.31 16 22 C -0.13 -2.47 5.12 -26.40 -0.14 -2.60 16 23 C 0.09 1.34 5.29 -3.54 -0.02 1.32 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.18 16 26 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 28 H 0.09 0.61 8.02 -51.93 -0.42 0.20 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.62 6.05 -51.93 -0.31 0.30 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.76 6.29 -51.93 -0.33 0.43 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 35 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 36 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 39 H 0.09 2.35 6.02 -51.93 -0.31 2.03 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.62 7.07 -51.93 -0.37 1.26 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -32.64 328.46 -7.92 -40.56 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.03 Total: -1.06 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.25 Total: 4.16 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.33 Total: -49.77 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.23 Total: -15.68 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.64 -7.92 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948992891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.887 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds