Wall clock time and date at job start Tue Mar 31 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.52117 * 2 1 4 4 O 1.21288 * 119.99867 * 237.40209 * 3 2 1 5 5 N 1.34772 * 120.00061 * 57.40034 * 3 2 1 6 6 C 1.47019 * 125.64783 * 354.22571 * 5 3 2 7 7 C 1.54318 * 107.27120 * 181.02108 * 6 5 3 8 8 C 1.55157 * 102.94453 * 22.19200 * 7 6 5 9 9 H 1.08997 * 111.00787 * 82.57156 * 8 7 6 10 10 N 1.46507 * 111.03765 * 206.41083 * 8 7 6 11 11 C 1.36934 * 119.99746 * 270.39274 * 10 8 7 12 12 H 1.07998 * 120.00233 * 359.97438 * 11 10 8 13 13 C 1.38813 * 119.99652 * 180.02562 * 11 10 8 14 14 N 1.31623 * 120.00005 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00038 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46984 * 59.99773 * 15 13 11 17 17 H 1.48499 * 109.47337 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46607 * 299.99804 * 15 13 11 19 19 C 1.47421 * 125.64916 * 174.17515 * 5 3 2 20 20 C 1.53181 * 109.52208 * 239.87337 * 2 1 3 21 21 C 1.53182 * 109.03383 * 183.04706 * 20 2 1 22 22 C 1.53093 * 109.16374 * 56.98554 * 21 20 2 23 23 O 1.42903 * 109.40949 * 302.38851 * 22 21 20 24 24 C 1.43040 * 114.13568 * 61.16485 * 23 22 21 25 25 H 1.08996 * 109.47558 * 44.70698 * 1 2 3 26 26 H 1.09003 * 109.46635 * 164.70326 * 1 2 3 27 27 H 1.09001 * 109.47028 * 284.69961 * 1 2 3 28 28 H 1.09001 * 109.88289 * 300.43422 * 6 5 3 29 29 H 1.08995 * 109.88814 * 61.44890 * 6 5 3 30 30 H 1.08998 * 110.72399 * 263.82698 * 7 6 5 31 31 H 1.09005 * 110.72419 * 140.55026 * 7 6 5 32 32 H 0.96998 * 120.00176 * 90.39151 * 10 8 7 33 33 H 0.97000 * 119.99661 * 179.97438 * 14 13 11 34 34 H 1.09004 * 110.37013 * 37.07477 * 19 5 3 35 35 H 1.09001 * 110.37217 * 274.75215 * 19 5 3 36 36 H 1.08992 * 109.54781 * 302.91512 * 20 2 1 37 37 H 1.09003 * 109.54430 * 63.18642 * 20 2 1 38 38 H 1.09003 * 109.51733 * 176.88756 * 21 20 2 39 39 H 1.08997 * 109.52342 * 297.07562 * 21 20 2 40 40 H 1.08998 * 109.47684 * 62.37028 * 22 21 20 41 41 H 1.08998 * 109.48100 * 182.39097 * 22 21 20 42 42 H 1.08991 * 109.56794 * 178.88803 * 24 23 22 43 43 H 1.09001 * 109.46560 * 58.80419 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7696 1.8028 -0.8849 5 7 1.6661 2.2656 0.9833 6 6 0.6912 1.9736 2.0443 7 6 0.5744 3.2389 2.9200 8 6 1.0660 4.3644 1.9718 9 1 0.2647 4.6973 1.3122 10 7 1.6179 5.4887 2.7319 11 6 0.8001 6.5115 3.1323 12 1 -0.2515 6.4897 2.8874 13 6 1.3232 7.5771 3.8520 14 7 2.6049 7.6040 4.1500 15 14 0.2079 8.9728 4.3977 16 1 -0.8620 8.4366 5.2769 17 1 1.0039 9.9794 5.1449 18 1 -0.4049 9.6116 3.2053 19 6 2.1758 3.6358 1.1736 20 6 2.0419 -0.7246 -1.2487 21 6 3.5717 -0.7850 -1.1994 22 6 4.0058 -1.4794 0.0941 23 8 3.4708 -0.7727 1.2151 24 6 2.0416 -0.7242 1.2480 25 1 -0.3634 0.7303 -0.7229 26 1 -0.3633 -0.9913 -0.2711 27 1 -0.3633 0.2608 0.9940 28 1 -0.2772 1.7374 1.6033 29 1 1.0388 1.1342 2.6464 30 1 1.2193 3.1631 3.7954 31 1 -0.4609 3.4090 3.2160 32 1 2.5624 5.5086 2.9516 33 1 2.9704 8.3488 4.6526 34 1 2.3301 4.1205 0.2096 35 1 3.1046 3.6193 1.7438 36 1 1.6377 -1.7365 -1.2746 37 1 1.7270 -0.1819 -2.1401 38 1 3.9418 -1.3475 -2.0566 39 1 3.9771 0.2265 -1.2236 40 1 3.6339 -2.5039 0.0991 41 1 5.0941 -1.4874 0.1548 42 1 1.7150 -0.1880 2.1389 43 1 1.6441 -1.7390 1.2680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970352855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:28 Heat of formation + Delta-G solvation = -62.344340 kcal Electronic energy + Delta-G solvation = -23537.264676 eV Core-core repulsion = 20196.894013 eV Total energy + Delta-G solvation = -3340.370663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94599 -38.60871 -37.13552 -34.72206 -34.11140 -32.43040 -31.19686 -29.56221 -27.80076 -27.15660 -25.25031 -24.41683 -23.29136 -22.07336 -21.16831 -20.06729 -18.74294 -17.32797 -16.90988 -16.41985 -15.85327 -15.83469 -15.27838 -14.75508 -14.52581 -14.25002 -14.02031 -13.61789 -13.37507 -13.03392 -12.90181 -12.75640 -12.52797 -12.29516 -12.19026 -11.94014 -11.75353 -11.54460 -11.14977 -11.11874 -10.86312 -10.70351 -10.60050 -10.57464 -10.26911 -10.06670 -9.76356 -9.72376 -9.27037 -8.95551 -8.32632 -7.04997 -5.82218 -3.12944 2.78196 3.16301 3.41334 3.46109 3.47107 3.74028 4.28992 4.43682 4.54698 4.62261 4.78889 4.91248 5.01409 5.04434 5.12804 5.19249 5.22835 5.30968 5.37465 5.40887 5.50670 5.56385 5.61021 5.69441 5.71076 5.77168 5.82241 5.92439 5.98244 6.04335 6.16078 6.26483 6.37366 6.39161 6.57569 6.64005 6.91352 7.02845 7.64421 7.78971 8.34670 8.37743 9.46640 10.00942 10.35927 11.39912 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035478 B = 0.003735 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.041420 B = 7495.837948 C = 7657.632958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.547 3.453 4 O -0.540 6.540 5 N -0.609 5.609 6 C 0.091 3.909 7 C -0.156 4.156 8 C 0.172 3.828 9 H 0.064 0.936 10 N -0.714 5.714 11 C -0.246 4.246 12 H 0.072 0.928 13 C -0.009 4.009 14 N -0.930 5.930 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C 0.099 3.901 20 C -0.093 4.093 21 C -0.169 4.169 22 C 0.060 3.940 23 O -0.376 6.376 24 C 0.067 3.933 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.387 0.613 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 -20.593 -7.481 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C 0.335 3.665 4 O -0.418 6.418 5 N -0.342 5.342 6 C -0.032 4.032 7 C -0.197 4.197 8 C 0.060 3.940 9 H 0.082 0.918 10 N -0.355 5.355 11 C -0.377 4.377 12 H 0.090 0.910 13 C -0.206 4.206 14 N -0.578 5.578 15 Si 0.740 3.260 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 C -0.024 4.024 20 C -0.131 4.131 21 C -0.206 4.206 22 C -0.017 4.017 23 O -0.294 6.294 24 C -0.010 4.010 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.157 -20.185 -7.826 21.878 hybrid contribution -0.497 0.608 0.275 0.832 sum -3.654 -19.577 -7.551 21.298 Atomic orbital electron populations 1.22036 0.92120 1.02961 1.03644 1.21443 0.97662 0.93659 0.98902 1.19794 0.80296 0.86046 0.80373 1.90607 1.37487 1.77475 1.36241 1.48332 1.42815 1.15344 1.27697 1.22496 0.92057 0.99358 0.89323 1.23438 1.02603 0.94384 0.99308 1.21283 0.93643 0.87533 0.91507 0.91825 1.42255 1.09404 1.20084 1.63707 1.19171 0.91776 0.98074 1.28668 0.91046 1.24769 0.96018 0.98796 1.00980 1.69656 1.11247 1.32678 1.44170 0.86247 0.79481 0.81974 0.78325 1.21183 1.21642 1.21176 1.22551 0.98120 0.80761 1.01005 1.21421 0.95990 0.99253 0.96432 1.22423 0.96212 1.04343 0.97641 1.22622 0.99084 0.94047 0.85956 1.88026 1.19540 1.76480 1.45366 1.22853 0.81791 0.99478 0.96905 0.91636 0.91440 0.90644 0.91176 0.91830 0.90528 0.90730 0.77912 0.93288 0.90641 0.91378 0.91528 0.90775 0.91215 0.88197 0.93565 0.88996 0.87803 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 7.80 37.16 0.29 -1.05 16 2 C -0.11 -1.29 0.50 -155.52 -0.08 -1.37 16 3 C 0.55 8.57 5.98 -10.99 -0.07 8.50 16 4 O -0.54 -10.22 13.98 5.55 0.08 -10.14 16 5 N -0.61 -9.51 3.32 -170.53 -0.57 -10.08 16 6 C 0.09 1.17 5.15 -3.07 -0.02 1.16 16 7 C -0.16 -2.51 6.65 -24.90 -0.17 -2.67 16 8 C 0.17 3.34 3.70 -65.78 -0.24 3.09 16 9 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 10 N -0.71 -17.46 5.26 -51.35 -0.27 -17.73 16 11 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 12 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 13 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 14 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 15 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.10 1.80 6.57 -2.53 -0.02 1.78 16 20 C -0.09 -0.99 4.41 -26.54 -0.12 -1.11 16 21 C -0.17 -1.92 5.81 -26.59 -0.15 -2.07 16 22 C 0.06 0.63 6.84 37.21 0.25 0.89 16 23 O -0.38 -5.01 10.45 -35.23 -0.37 -5.38 16 24 C 0.07 0.72 5.38 37.21 0.20 0.92 16 25 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 26 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 27 H 0.07 0.61 5.05 -51.93 -0.26 0.34 16 28 H 0.07 0.76 5.73 -51.93 -0.30 0.47 16 29 H 0.06 0.72 5.44 -51.93 -0.28 0.44 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.39 10.12 7.73 -40.82 -0.32 9.81 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 35 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 36 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 37 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.49 5.72 -51.93 -0.30 1.19 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.10 4.93 -51.93 -0.26 0.85 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -31.73 327.16 -7.57 -39.30 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.72 Total: 8.18 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.36 Total: 0.94 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.11 Total: -54.76 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.29 Total: -15.51 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.73 -7.57 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970352855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.040 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds