Wall clock time and date at job start Tue Mar 31 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46899 * 2 1 4 4 N 1.46500 * 109.47446 * 120.00129 * 2 1 3 5 5 C 1.34777 * 119.99874 * 274.99940 * 4 2 1 6 6 O 1.21289 * 119.99867 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00221 * 180.02562 * 5 4 2 8 8 H 1.09004 * 110.41620 * 302.68741 * 7 5 4 9 9 C 1.54472 * 110.37494 * 64.99727 * 7 5 4 10 10 C 1.54505 * 104.06681 * 142.81177 * 9 7 5 11 11 C 1.54487 * 104.06179 * 0.02562 * 10 9 7 12 12 H 1.08997 * 110.37332 * 94.85398 * 11 10 9 13 13 C 1.52999 * 110.37340 * 217.18979 * 11 10 9 14 14 O 1.44421 * 104.79872 * 336.02098 * 11 10 9 15 15 C 1.52997 * 109.46910 * 240.00140 * 2 1 3 16 16 C 1.53948 * 113.74463 * 156.67494 * 15 2 1 17 17 N 1.47587 * 86.11720 * 222.04563 * 16 15 2 18 18 C 1.36931 * 134.49248 * 204.63507 * 17 16 15 19 19 H 1.07996 * 119.99855 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99772 * 0.02562 * 18 17 16 21 21 N 1.31613 * 120.00353 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47355 * 59.99435 * 22 20 18 24 24 H 1.48498 * 109.47197 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46897 * 299.99799 * 22 20 18 26 26 C 1.47588 * 91.01427 * 24.63624 * 17 16 15 27 27 H 1.08997 * 109.48025 * 60.00113 * 1 2 3 28 28 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47093 * 299.99557 * 1 2 3 30 30 H 0.96997 * 120.00454 * 95.00253 * 4 2 1 31 31 H 1.09003 * 110.51251 * 24.16654 * 9 7 5 32 32 H 1.08997 * 110.51471 * 261.46110 * 9 7 5 33 33 H 1.09003 * 110.51737 * 241.36166 * 10 9 7 34 34 H 1.08999 * 110.63305 * 118.70297 * 10 9 7 35 35 H 1.09010 * 109.46831 * 59.99653 * 13 11 10 36 36 H 1.08996 * 109.46987 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.46862 * 300.00235 * 13 11 10 38 38 H 1.09000 * 112.94332 * 288.40558 * 15 2 1 39 39 H 1.09001 * 113.76387 * 336.34609 * 16 15 2 40 40 H 1.08994 * 113.77054 * 107.74408 * 16 15 2 41 41 H 0.97004 * 120.00569 * 180.02562 * 21 20 18 42 42 H 1.08991 * 113.76833 * 221.05934 * 26 17 16 43 43 H 1.09001 * 113.86644 * 89.67238 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1587 2.4114 7 6 2.6501 -0.7284 3.5874 8 1 2.0151 -1.5836 3.8191 9 6 4.1124 -1.1835 3.3856 10 6 4.7651 -0.9748 4.7704 11 6 3.6196 -0.4188 5.6453 12 1 3.1338 -1.2266 6.1925 13 6 4.1544 0.6367 6.6152 14 8 2.6975 0.1799 4.7089 15 6 2.0399 -0.7212 -1.2492 16 6 3.4665 -0.3146 -1.6609 17 7 2.9582 -0.3120 -3.0464 18 6 3.5326 -0.4677 -4.2796 19 1 2.9220 -0.4227 -5.1693 20 6 4.8995 -0.6845 -4.3862 21 7 5.6436 -0.7399 -3.3020 22 14 5.6831 -0.8977 -6.0685 23 1 5.4488 0.3224 -6.8819 24 1 7.1437 -1.1138 -5.9105 25 1 5.0795 -2.0707 -6.7505 26 6 1.5821 -0.0740 -2.5689 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 2.2492 -1.6317 1.1526 31 1 4.6045 -0.5657 2.6345 32 1 4.1494 -2.2349 3.1006 33 1 5.5798 -0.2537 4.7040 34 1 5.1263 -1.9218 5.1714 35 1 4.6002 1.4560 6.0509 36 1 3.3351 1.0189 7.2241 37 1 4.9088 0.1876 7.2611 38 1 1.8827 -1.7992 -1.2115 39 1 3.7639 0.6701 -1.3001 40 1 4.2151 -1.0832 -1.4690 41 1 6.5989 -0.8910 -3.3764 42 1 0.8263 -0.6506 -3.1020 43 1 1.3242 0.9808 -2.4746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970441170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:42 Heat of formation + Delta-G solvation = -35.496006 kcal Electronic energy + Delta-G solvation = -22686.221519 eV Core-core repulsion = 19347.015087 eV Total energy + Delta-G solvation = -3339.206432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37275 -38.96390 -37.79999 -34.75779 -32.51381 -32.39535 -31.83535 -30.18581 -27.51254 -26.82410 -24.79180 -23.95654 -22.83006 -21.34519 -21.23595 -20.23143 -19.03769 -17.21366 -16.80244 -16.62369 -16.32300 -15.60727 -14.91053 -14.81717 -14.30424 -13.97785 -13.87221 -13.70769 -13.44574 -12.97399 -12.70184 -12.55220 -12.39886 -12.13682 -11.90473 -11.69438 -11.61630 -11.32192 -11.28591 -11.09300 -10.93993 -10.88340 -10.72590 -10.36044 -10.09334 -9.93949 -9.75120 -9.50446 -9.34446 -8.79021 -8.77978 -6.86886 -5.76167 -3.08305 2.74502 2.97294 3.39624 3.43767 3.44894 3.89845 4.34225 4.45670 4.49909 4.66903 4.77626 4.90229 5.04709 5.11605 5.20795 5.26258 5.29315 5.31435 5.44017 5.54634 5.58926 5.65529 5.68066 5.81323 5.82765 5.87795 5.94409 5.95779 6.04909 6.26072 6.37531 6.42721 6.58611 6.61671 6.68430 6.84168 7.23782 7.37181 7.56181 7.68690 7.98992 8.39552 9.05423 9.71557 10.61211 11.40812 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.003728 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.385519 B = 7509.359475 C = 8485.100150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.087 0.913 4 N -0.715 5.715 5 C 0.518 3.482 6 O -0.524 6.524 7 C 0.058 3.942 8 H 0.092 0.908 9 C -0.147 4.147 10 C -0.149 4.149 11 C 0.066 3.934 12 H 0.070 0.930 13 C -0.146 4.146 14 O -0.343 6.343 15 C -0.146 4.146 16 C 0.171 3.829 17 N -0.613 5.613 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.130 3.870 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.399 0.601 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.254 0.746 42 H 0.044 0.956 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -4.107 17.582 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.105 0.895 4 N -0.367 5.367 5 C 0.302 3.698 6 O -0.399 6.399 7 C -0.003 4.003 8 H 0.109 0.891 9 C -0.185 4.185 10 C -0.187 4.187 11 C 0.008 3.992 12 H 0.088 0.912 13 C -0.203 4.203 14 O -0.261 6.261 15 C -0.166 4.166 16 C 0.045 3.955 17 N -0.339 5.339 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.003 3.997 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.233 0.767 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.214 -3.080 17.412 18.435 hybrid contribution 0.742 -0.698 -0.984 1.416 sum -4.472 -3.778 16.428 17.440 Atomic orbital electron populations 1.22137 0.95680 1.01740 1.02142 1.21099 0.93477 0.97601 0.83117 0.89473 1.45998 1.67241 1.14056 1.09409 1.20122 0.78086 0.87436 0.84130 1.90717 1.48871 1.15654 1.84691 1.22831 0.97652 0.92531 0.87283 0.89060 1.22930 0.93748 1.03020 0.98775 1.23008 0.98913 1.02168 0.94621 1.23063 0.89240 0.95688 0.91186 0.91238 1.21792 1.01184 0.98892 0.98474 1.89277 1.64273 1.44465 1.28082 1.23818 1.00944 0.99655 0.92189 1.22265 0.91698 0.98263 0.83254 1.45947 1.02481 1.83276 1.02146 1.18985 0.91107 1.42087 0.82931 0.90332 1.24774 0.95944 1.02423 0.97302 1.69803 1.05185 1.55626 1.26284 0.86207 0.78318 0.77997 0.83277 1.21203 1.21560 1.21102 1.22498 0.89692 0.96780 0.90716 0.91371 0.92722 0.92781 0.76703 0.89556 0.89425 0.90168 0.90224 0.91501 0.91845 0.91108 0.89381 0.95683 0.91038 0.93649 0.93763 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.29 37.16 0.35 -1.81 16 2 C 0.15 2.36 2.42 -67.93 -0.16 2.20 16 3 H 0.09 1.60 7.37 -51.93 -0.38 1.22 16 4 N -0.71 -9.68 5.06 -53.81 -0.27 -9.96 16 5 C 0.52 7.85 7.05 -10.99 -0.08 7.77 16 6 O -0.52 -10.33 16.22 -13.66 -0.22 -10.55 16 7 C 0.06 0.69 3.71 -27.11 -0.10 0.59 16 8 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 9 C -0.15 -1.47 6.61 -25.17 -0.17 -1.63 16 10 C -0.15 -1.30 6.63 -25.16 -0.17 -1.46 16 11 C 0.07 0.64 3.92 -25.95 -0.10 0.54 16 12 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 13 C -0.15 -1.24 9.52 37.16 0.35 -0.88 16 14 O -0.34 -4.75 10.60 -54.44 -0.58 -5.33 16 15 C -0.15 -2.59 3.50 -89.69 -0.31 -2.90 16 16 C 0.17 3.96 7.07 -2.97 -0.02 3.94 16 17 N -0.61 -15.72 3.70 -177.88 -0.66 -16.38 16 18 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.29 11.38 55.49 0.63 -26.66 16 22 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.13 2.60 7.56 -2.97 -0.02 2.58 16 27 H 0.07 0.89 7.43 -51.93 -0.39 0.51 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 31 H 0.09 1.04 7.86 -51.93 -0.41 0.63 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.03 0.62 7.96 -51.93 -0.41 0.21 16 40 H 0.07 1.81 7.15 -51.93 -0.37 1.44 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -34.44 349.31 -8.89 -43.33 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.34 Total: 1.01 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.69 Total: 2.13 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.30 Total: -53.00 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.80 Total: -15.88 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.44 -8.89 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970441170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.833 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds