Wall clock time and date at job start Tue Mar 31 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 N 1.46498 * 109.46972 * 240.00077 * 2 1 3 5 5 C 1.34772 * 120.00293 * 85.27727 * 4 2 1 6 6 O 1.21284 * 119.99837 * 359.72327 * 5 4 2 7 7 C 1.50699 * 120.00294 * 179.72486 * 5 4 2 8 8 H 1.09005 * 110.32877 * 305.79676 * 7 5 4 9 9 C 1.54480 * 110.37036 * 68.16193 * 7 5 4 10 10 C 1.54513 * 104.06074 * 142.81242 * 9 7 5 11 11 C 1.54485 * 104.06255 * 0.02562 * 10 9 7 12 12 H 1.08995 * 110.37094 * 94.85152 * 11 10 9 13 13 C 1.53002 * 110.36981 * 217.19213 * 11 10 9 14 14 O 1.44425 * 110.37452 * 183.54706 * 7 5 4 15 15 C 1.53004 * 109.47167 * 119.99998 * 2 1 3 16 16 C 1.53946 * 113.74127 * 282.05584 * 15 2 1 17 17 N 1.47575 * 86.11909 * 222.04812 * 16 15 2 18 18 C 1.36937 * 134.49327 * 204.64438 * 17 16 15 19 19 H 1.07998 * 119.99732 * 182.73275 * 18 17 16 20 20 C 1.38812 * 120.00003 * 2.73488 * 18 17 16 21 21 N 1.31618 * 119.99921 * 353.40326 * 20 18 17 22 22 Si 1.86802 * 119.99837 * 173.41016 * 20 18 17 23 23 H 1.48493 * 109.47223 * 94.97145 * 22 20 18 24 24 H 1.48503 * 109.46542 * 214.96769 * 22 20 18 25 25 H 1.48496 * 109.47307 * 334.96768 * 22 20 18 26 26 C 1.47583 * 91.01441 * 24.63940 * 17 16 15 27 27 H 1.09005 * 109.46655 * 304.49052 * 1 2 3 28 28 H 1.08999 * 109.46948 * 64.48429 * 1 2 3 29 29 H 1.08995 * 109.47337 * 184.49242 * 1 2 3 30 30 H 0.97001 * 119.99689 * 264.99904 * 4 2 1 31 31 H 1.08998 * 110.51084 * 261.45234 * 9 7 5 32 32 H 1.08997 * 110.51609 * 24.16773 * 9 7 5 33 33 H 1.08994 * 110.51248 * 241.35792 * 10 9 7 34 34 H 1.09001 * 110.50870 * 118.64279 * 10 9 7 35 35 H 1.08999 * 109.46815 * 176.83182 * 13 11 10 36 36 H 1.09008 * 109.46863 * 296.83094 * 13 11 10 37 37 H 1.08992 * 109.47060 * 56.83249 * 13 11 10 38 38 H 1.08998 * 112.94402 * 53.78395 * 15 2 1 39 39 H 1.09005 * 113.76996 * 336.35429 * 16 15 2 40 40 H 1.09004 * 113.76901 * 107.74639 * 16 15 2 41 41 H 0.96998 * 119.99779 * 180.02562 * 21 20 18 42 42 H 1.09003 * 113.76921 * 221.06283 * 26 17 16 43 43 H 1.09001 * 113.76589 * 89.66285 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1523 -0.0169 -2.3557 6 8 1.8639 1.1598 -2.4102 7 6 2.6605 -0.7258 -3.5847 8 1 3.6136 -1.2113 -3.3749 9 6 1.6239 -1.7605 -4.0759 10 6 1.7157 -1.6817 -5.6162 11 6 2.7974 -0.6092 -5.8734 12 1 3.7708 -1.0786 -6.0159 13 6 2.4289 0.2370 -7.0937 14 8 2.8007 0.2048 -4.6801 15 6 2.0400 -0.7213 1.2493 16 6 1.9691 0.1310 2.5293 17 7 3.3033 -0.4145 2.8463 18 6 4.0103 -0.6098 4.0026 19 1 5.0168 -0.9992 3.9609 20 6 3.4334 -0.3072 5.2284 21 7 2.2599 0.2871 5.2746 22 14 4.3225 -0.7435 6.8122 23 1 5.0963 0.4322 7.2855 24 1 3.3299 -1.1316 7.8463 25 1 5.2481 -1.8779 6.5640 26 6 3.5693 -0.6651 1.4164 27 1 -0.3633 0.5820 0.8471 28 1 -0.3633 0.4427 -0.9274 29 1 -0.3634 -1.0244 0.0805 30 1 2.2490 -1.6318 -1.1526 31 1 1.8871 -2.7595 -3.7282 32 1 0.6236 -1.4889 -3.7385 33 1 0.7610 -1.3711 -6.0404 34 1 2.0243 -2.6418 -6.0300 35 1 3.1716 1.0234 -7.2282 36 1 2.4050 -0.3959 -7.9809 37 1 1.4476 0.6862 -6.9413 38 1 1.6225 -1.7217 1.3625 39 1 1.9665 1.2049 2.3426 40 1 1.1898 -0.1832 3.2237 41 1 1.8570 0.4988 6.1312 42 1 4.0676 -1.6149 1.2222 43 1 4.0369 0.1749 0.9028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970441171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:43 Heat of formation + Delta-G solvation = -35.523630 kcal Electronic energy + Delta-G solvation = -22542.188877 eV Core-core repulsion = 19202.981247 eV Total energy + Delta-G solvation = -3339.207630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44255 -39.00866 -37.79806 -34.77643 -32.58354 -32.42173 -31.87517 -30.29813 -27.48199 -26.87870 -24.75040 -23.99823 -22.93225 -21.40768 -21.26259 -20.22552 -19.11324 -17.25365 -16.96342 -16.65976 -16.36355 -15.43413 -14.96979 -14.76470 -14.51599 -14.10237 -13.96606 -13.67452 -13.46092 -13.12222 -12.75708 -12.63304 -12.32468 -12.14621 -11.97756 -11.76283 -11.56765 -11.37304 -11.23519 -11.19313 -11.06705 -10.89594 -10.64752 -10.36204 -10.17567 -9.96444 -9.81019 -9.51433 -9.36894 -8.84570 -8.72402 -6.87497 -5.76683 -3.07630 2.67439 2.94184 3.39489 3.44417 3.46698 3.82122 4.22221 4.39222 4.45978 4.56252 4.69206 4.83100 4.99181 5.06873 5.14596 5.16961 5.22099 5.35019 5.41891 5.43595 5.54827 5.54980 5.65289 5.66657 5.74381 5.83393 5.86105 6.01006 6.08415 6.28657 6.36697 6.45455 6.53696 6.60545 6.64796 6.83299 7.23056 7.38266 7.56241 7.64657 7.99199 8.35115 9.05601 9.71845 10.61413 11.40976 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041104 B = 0.003070 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.034648 B = 9117.241625 C = 9345.473728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 H 0.087 0.913 4 N -0.716 5.716 5 C 0.517 3.483 6 O -0.523 6.523 7 C 0.057 3.943 8 H 0.094 0.906 9 C -0.144 4.144 10 C -0.149 4.149 11 C 0.065 3.935 12 H 0.071 0.929 13 C -0.146 4.146 14 O -0.341 6.341 15 C -0.146 4.146 16 C 0.176 3.824 17 N -0.612 5.612 18 C -0.224 4.224 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.125 3.875 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.398 0.602 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.254 0.746 42 H 0.041 0.959 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 -6.878 -22.235 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.105 0.895 4 N -0.368 5.368 5 C 0.301 3.699 6 O -0.398 6.398 7 C -0.004 4.004 8 H 0.111 0.889 9 C -0.182 4.182 10 C -0.187 4.187 11 C 0.008 3.992 12 H 0.089 0.911 13 C -0.203 4.203 14 O -0.260 6.260 15 C -0.166 4.166 16 C 0.050 3.950 17 N -0.338 5.338 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.001 4.001 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.232 0.768 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.814 -5.764 -21.901 22.821 hybrid contribution 0.670 -0.785 0.946 1.400 sum -2.144 -6.549 -20.955 22.059 Atomic orbital electron populations 1.22105 0.95428 1.01870 1.02144 1.21123 0.93797 0.97502 0.82866 0.89451 1.46038 1.67285 1.13947 1.09541 1.20116 0.78404 0.87392 0.84002 1.90726 1.48900 1.15635 1.84503 1.22860 0.99264 0.90111 0.88209 0.88878 1.22901 1.00192 0.99208 0.95909 1.23015 1.00381 0.99733 0.95569 1.23072 0.97955 0.91327 0.86895 0.91110 1.21791 1.02837 1.00223 0.95477 1.89307 1.94393 1.28704 1.13573 1.23843 0.97604 1.00692 0.94494 1.22195 0.89667 0.93937 0.89230 1.45999 1.16189 1.71967 0.99667 1.19029 0.96887 1.36667 0.82555 0.90317 1.24785 0.97312 1.00891 0.97452 1.69824 1.17211 1.45524 1.24209 0.86117 0.78384 0.78028 0.83331 1.21688 1.21582 1.20598 1.22546 0.93117 0.97678 0.86806 0.91108 0.92888 0.92717 0.76836 0.89516 0.90043 0.90268 0.90210 0.91677 0.91126 0.91633 0.89290 0.95413 0.90838 0.93634 0.94101 0.95008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.43 37.16 0.35 -1.87 16 2 C 0.15 2.35 2.29 -67.93 -0.16 2.20 16 3 H 0.09 1.60 7.48 -51.93 -0.39 1.21 16 4 N -0.72 -9.21 4.95 -53.81 -0.27 -9.47 16 5 C 0.52 7.48 7.04 -10.99 -0.08 7.41 16 6 O -0.52 -10.06 16.22 -13.64 -0.22 -10.28 16 7 C 0.06 0.63 3.71 -27.11 -0.10 0.53 16 8 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 9 C -0.14 -1.15 6.62 -25.16 -0.17 -1.32 16 10 C -0.15 -1.05 6.63 -25.16 -0.17 -1.22 16 11 C 0.07 0.57 3.92 -25.95 -0.10 0.47 16 12 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 13 C -0.15 -1.11 9.52 37.16 0.35 -0.76 16 14 O -0.34 -4.52 10.61 -54.42 -0.58 -5.10 16 15 C -0.15 -2.60 3.36 -89.69 -0.30 -2.90 16 16 C 0.18 4.09 7.02 -2.98 -0.02 4.07 16 17 N -0.61 -15.79 3.70 -177.90 -0.66 -16.45 16 18 C -0.22 -6.34 10.69 -15.06 -0.16 -6.50 16 19 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.45 11.43 55.49 0.63 -26.81 16 22 Si 0.91 22.24 29.56 -169.99 -5.02 17.22 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.12 2.52 8.38 -2.97 -0.02 2.49 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.40 3.97 8.60 -40.82 -0.35 3.62 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 33 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 40 H 0.07 1.87 7.19 -51.93 -0.37 1.50 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -34.70 350.85 -8.88 -43.58 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.39 Total: -0.24 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.67 Total: 2.28 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.29 Total: -52.73 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.80 Total: -15.39 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.70 -8.88 -43.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970441171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.054 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds