Wall clock time and date at job start Tue Mar 31 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 N 1.46498 * 109.46972 * 240.00077 * 2 1 3 5 5 C 1.34772 * 120.00293 * 85.27727 * 4 2 1 6 6 O 1.21284 * 119.99837 * 359.72327 * 5 4 2 7 7 C 1.50699 * 120.00294 * 179.72486 * 5 4 2 8 8 H 1.09005 * 110.32877 * 305.79676 * 7 5 4 9 9 C 1.54480 * 110.37036 * 68.16193 * 7 5 4 10 10 C 1.54513 * 104.06074 * 142.81242 * 9 7 5 11 11 C 1.54485 * 104.06255 * 0.02562 * 10 9 7 12 12 H 1.08995 * 110.37094 * 94.85152 * 11 10 9 13 13 C 1.53002 * 110.36981 * 217.19213 * 11 10 9 14 14 O 1.44425 * 110.37452 * 183.54706 * 7 5 4 15 15 C 1.53004 * 109.47167 * 119.99998 * 2 1 3 16 16 C 1.53946 * 113.74127 * 282.05584 * 15 2 1 17 17 N 1.47575 * 86.11909 * 222.04812 * 16 15 2 18 18 C 1.36937 * 134.49327 * 204.64438 * 17 16 15 19 19 H 1.07998 * 119.99732 * 182.73275 * 18 17 16 20 20 C 1.38812 * 120.00003 * 2.73488 * 18 17 16 21 21 N 1.31618 * 119.99921 * 353.40326 * 20 18 17 22 22 Si 1.86802 * 119.99837 * 173.41016 * 20 18 17 23 23 H 1.48493 * 109.47223 * 94.97145 * 22 20 18 24 24 H 1.48503 * 109.46542 * 214.96769 * 22 20 18 25 25 H 1.48496 * 109.47307 * 334.96768 * 22 20 18 26 26 C 1.47583 * 91.01441 * 24.63940 * 17 16 15 27 27 H 1.09005 * 109.46655 * 304.49052 * 1 2 3 28 28 H 1.08999 * 109.46948 * 64.48429 * 1 2 3 29 29 H 1.08995 * 109.47337 * 184.49242 * 1 2 3 30 30 H 0.97001 * 119.99689 * 264.99904 * 4 2 1 31 31 H 1.08998 * 110.51084 * 261.45234 * 9 7 5 32 32 H 1.08997 * 110.51609 * 24.16773 * 9 7 5 33 33 H 1.08994 * 110.51248 * 241.35792 * 10 9 7 34 34 H 1.09001 * 110.50870 * 118.64279 * 10 9 7 35 35 H 1.08999 * 109.46815 * 176.83182 * 13 11 10 36 36 H 1.09008 * 109.46863 * 296.83094 * 13 11 10 37 37 H 1.08992 * 109.47060 * 56.83249 * 13 11 10 38 38 H 1.08998 * 112.94402 * 53.78395 * 15 2 1 39 39 H 1.09005 * 113.76996 * 336.35429 * 16 15 2 40 40 H 1.09004 * 113.76901 * 107.74639 * 16 15 2 41 41 H 0.96998 * 119.99779 * 180.02562 * 21 20 18 42 42 H 1.09003 * 113.76921 * 221.06283 * 26 17 16 43 43 H 1.09001 * 113.76589 * 89.66285 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1523 -0.0169 -2.3557 6 8 1.8639 1.1598 -2.4102 7 6 2.6605 -0.7258 -3.5847 8 1 3.6136 -1.2113 -3.3749 9 6 1.6239 -1.7605 -4.0759 10 6 1.7157 -1.6817 -5.6162 11 6 2.7974 -0.6092 -5.8734 12 1 3.7708 -1.0786 -6.0159 13 6 2.4289 0.2370 -7.0937 14 8 2.8007 0.2048 -4.6801 15 6 2.0400 -0.7213 1.2493 16 6 1.9691 0.1310 2.5293 17 7 3.3033 -0.4145 2.8463 18 6 4.0103 -0.6098 4.0026 19 1 5.0168 -0.9992 3.9609 20 6 3.4334 -0.3072 5.2284 21 7 2.2599 0.2871 5.2746 22 14 4.3225 -0.7435 6.8122 23 1 5.0963 0.4322 7.2855 24 1 3.3299 -1.1316 7.8463 25 1 5.2481 -1.8779 6.5640 26 6 3.5693 -0.6651 1.4164 27 1 -0.3633 0.5820 0.8471 28 1 -0.3633 0.4427 -0.9274 29 1 -0.3634 -1.0244 0.0805 30 1 2.2490 -1.6318 -1.1526 31 1 1.8871 -2.7595 -3.7282 32 1 0.6236 -1.4889 -3.7385 33 1 0.7610 -1.3711 -6.0404 34 1 2.0243 -2.6418 -6.0300 35 1 3.1716 1.0234 -7.2282 36 1 2.4050 -0.3959 -7.9809 37 1 1.4476 0.6862 -6.9413 38 1 1.6225 -1.7217 1.3625 39 1 1.9665 1.2049 2.3426 40 1 1.1898 -0.1832 3.2237 41 1 1.8570 0.4988 6.1312 42 1 4.0676 -1.6149 1.2222 43 1 4.0369 0.1749 0.9028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970441171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:43 Heat of formation + Delta-G solvation = -59.180565 kcal Electronic energy + Delta-G solvation = -22543.214719 eV Core-core repulsion = 19202.981247 eV Total energy + Delta-G solvation = -3340.233471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44991 -40.23843 -39.20780 -36.19261 -34.20145 -33.25594 -33.00730 -31.45554 -29.35273 -27.70279 -26.47804 -25.67539 -23.79539 -22.71457 -22.04301 -21.39439 -20.68003 -18.80529 -18.24894 -17.71582 -17.36028 -16.87958 -16.34196 -16.13648 -15.77708 -15.52300 -15.11037 -14.75002 -14.70009 -14.33282 -14.09946 -13.54422 -13.37766 -13.23940 -13.20106 -13.08751 -12.98845 -12.73592 -12.66140 -12.47393 -12.33578 -12.04627 -11.83649 -11.78076 -11.63944 -11.56208 -11.24493 -10.96003 -10.82303 -10.57045 -10.06931 -8.93869 -7.91832 -5.24527 1.45525 1.47175 1.56738 1.57758 1.91798 2.47186 3.03858 3.29453 3.38043 3.49120 3.64276 3.78243 3.95054 3.97359 4.01695 4.19678 4.26931 4.32353 4.44133 4.49536 4.57542 4.60444 4.76989 4.79399 4.82818 4.85993 4.95221 4.95693 4.98694 5.06521 5.09291 5.20412 5.24339 5.28047 5.29323 5.50883 5.54611 5.64778 5.87155 5.93348 6.60539 6.91446 7.27598 7.60248 8.56135 9.25707 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041104 B = 0.003070 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.034648 B = 9117.241625 C = 9345.473728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 H 0.055 0.945 4 N -0.700 5.700 5 C 0.513 3.487 6 O -0.579 6.579 7 C 0.057 3.943 8 H 0.120 0.880 9 C -0.139 4.139 10 C -0.143 4.143 11 C 0.055 3.945 12 H 0.088 0.912 13 C -0.146 4.146 14 O -0.385 6.385 15 C -0.106 4.106 16 C 0.169 3.831 17 N -0.643 5.643 18 C -0.238 4.238 19 H 0.084 0.916 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.980 3.020 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.265 1.265 26 C 0.126 3.874 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.417 0.583 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.007 0.993 40 H 0.046 0.954 41 H 0.249 0.751 42 H 0.067 0.933 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -9.830 -23.752 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.057 3.943 3 H 0.073 0.927 4 N -0.353 5.353 5 C 0.300 3.700 6 O -0.458 6.458 7 C -0.003 4.003 8 H 0.137 0.863 9 C -0.177 4.177 10 C -0.181 4.181 11 C -0.002 4.002 12 H 0.106 0.894 13 C -0.203 4.203 14 O -0.304 6.304 15 C -0.126 4.126 16 C 0.043 3.957 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.102 0.898 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.808 3.192 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.189 1.189 26 C 0.001 3.999 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.254 0.746 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.025 0.975 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.129 -8.773 -23.459 25.136 hybrid contribution 0.500 0.185 1.350 1.452 sum -1.629 -8.588 -22.108 23.774 Atomic orbital electron populations 1.22031 0.94015 1.03225 1.01585 1.20744 0.94768 0.95744 0.83082 0.92713 1.45780 1.66561 1.14653 1.08275 1.20867 0.77219 0.86815 0.85115 1.90702 1.51429 1.18262 1.85428 1.23009 1.01197 0.89958 0.86185 0.86299 1.22952 0.98515 0.99686 0.96515 1.23028 0.99727 1.00438 0.94905 1.23377 0.99573 0.91612 0.85615 0.89435 1.21832 1.01665 1.00446 0.96396 1.89278 1.94707 1.31038 1.15421 1.23441 0.95978 1.00456 0.92690 1.22105 0.88355 0.93605 0.91613 1.46450 1.17090 1.72185 1.01262 1.19454 0.97329 1.35893 0.83911 0.89837 1.25662 0.98323 1.01353 1.00761 1.70017 1.18814 1.46946 1.24493 0.85048 0.77262 0.77934 0.78989 1.21783 1.21814 1.18929 1.22697 0.94927 0.98523 0.83723 0.92036 0.93220 0.90263 0.74556 0.86149 0.91258 0.90516 0.87267 0.92673 0.88392 0.92990 0.87064 0.97507 0.93531 0.94209 0.91497 0.95396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.43 71.98 0.68 -3.44 16 2 C 0.16 4.94 2.29 44.99 0.10 5.04 16 3 H 0.05 2.07 7.48 -2.39 -0.02 2.06 16 4 N -0.70 -16.67 4.95 -442.54 -2.19 -18.86 16 5 C 0.51 14.44 7.04 87.66 0.62 15.05 16 6 O -0.58 -22.88 16.22 15.31 0.25 -22.63 16 7 C 0.06 1.15 3.71 30.35 0.11 1.26 16 8 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 9 C -0.14 -1.76 6.62 31.61 0.21 -1.55 16 10 C -0.14 -1.54 6.63 31.61 0.21 -1.34 16 11 C 0.06 0.85 3.92 31.10 0.12 0.97 16 12 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 13 C -0.15 -2.04 9.52 71.98 0.69 -1.36 16 14 O -0.38 -9.90 10.61 -130.63 -1.39 -11.29 16 15 C -0.11 -3.64 3.36 -10.13 -0.03 -3.68 16 16 C 0.17 8.08 7.02 86.48 0.61 8.69 16 17 N -0.64 -33.30 3.70 -716.76 -2.65 -35.95 16 18 C -0.24 -13.48 10.69 84.03 0.90 -12.59 16 19 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 21 N -0.95 -58.30 11.43 21.65 0.25 -58.05 16 22 Si 0.98 45.98 29.56 68.60 2.03 48.01 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.13 4.93 8.38 86.48 0.72 5.66 16 27 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.42 6.82 8.60 -92.71 -0.80 6.02 16 31 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.06 7.86 -2.39 -0.02 1.05 16 33 H 0.08 0.87 7.86 -2.39 -0.02 0.85 16 34 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 38 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.01 0.36 8.04 -2.38 -0.02 0.34 16 40 H 0.05 2.46 7.19 -2.39 -0.02 2.44 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.03 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -78.74 350.85 1.88 -76.86 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.19 Total: 12.64 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.40 Total: 9.27 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -4.59 Total: -112.86 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.14 Total: -33.91 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -78.74 1.88 -76.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970441171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.675 kcal (2) G-P(sol) polarization free energy of solvation -78.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds