Wall clock time and date at job start Tue Mar 31 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36930 * 120.00224 * 2 1 4 4 H 1.08000 * 119.99623 * 163.00934 * 3 2 1 5 5 C 1.38812 * 120.00170 * 343.28560 * 3 2 1 6 6 N 1.31619 * 119.99866 * 345.19021 * 5 3 2 7 7 Si 1.86797 * 119.99940 * 165.18756 * 5 3 2 8 8 H 1.48500 * 109.47546 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.47085 * 120.00069 * 7 5 3 10 10 H 1.48503 * 109.47231 * 240.00195 * 7 5 3 11 11 C 1.46501 * 119.99624 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.88533 * 179.29761 * 11 2 1 13 13 C 1.55155 * 111.00810 * 303.18115 * 11 2 1 14 14 C 1.54317 * 102.94671 * 153.57453 * 13 11 2 15 15 N 1.47027 * 107.26979 * 337.80998 * 14 13 11 16 16 C 1.34772 * 125.64682 * 178.99747 * 15 14 13 17 17 O 1.21372 * 119.99902 * 179.97438 * 16 15 14 18 18 C 1.49090 * 120.00263 * 359.97194 * 16 15 14 19 19 O 1.20781 * 119.99751 * 359.97438 * 18 16 15 20 20 C 1.50698 * 120.00014 * 180.02562 * 18 16 15 21 21 C 1.53006 * 109.47216 * 179.97438 * 20 18 16 22 22 C 1.52997 * 109.47288 * 299.99595 * 20 18 16 23 23 C 1.53002 * 109.47488 * 59.99684 * 20 18 16 24 24 C 1.47461 * 108.72223 * 358.97180 * 15 14 13 25 25 H 1.09000 * 109.46766 * 84.87716 * 1 2 3 26 26 H 1.09000 * 109.47204 * 204.88337 * 1 2 3 27 27 H 1.09001 * 109.46840 * 324.88296 * 1 2 3 28 28 H 0.96993 * 119.99685 * 179.97438 * 6 5 3 29 29 H 1.08997 * 110.72006 * 271.94241 * 13 11 2 30 30 H 1.09001 * 110.71949 * 35.21002 * 13 11 2 31 31 H 1.09000 * 109.88601 * 97.22427 * 14 13 11 32 32 H 1.09003 * 109.88801 * 218.23387 * 14 13 11 33 33 H 1.08998 * 109.46663 * 59.99919 * 21 20 18 34 34 H 1.08992 * 109.47083 * 179.97438 * 21 20 18 35 35 H 1.08995 * 109.46996 * 300.00335 * 21 20 18 36 36 H 1.09005 * 109.47047 * 59.99889 * 22 20 18 37 37 H 1.09001 * 109.47608 * 180.02562 * 22 20 18 38 38 H 1.08998 * 109.47251 * 300.00485 * 22 20 18 39 39 H 1.09005 * 109.46852 * 59.99799 * 23 20 18 40 40 H 1.09001 * 109.47401 * 179.97438 * 23 20 18 41 41 H 1.09001 * 109.47171 * 300.00413 * 23 20 18 42 42 H 1.09005 * 110.35266 * 265.25578 * 24 15 14 43 43 H 1.09004 * 110.40803 * 142.91547 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1944 1.2061 0.2733 5 6 1.4998 2.3626 -0.3457 6 7 0.3299 2.3160 -0.9472 7 14 2.2853 4.0123 0.0427 8 1 3.5907 3.7929 0.7158 9 1 2.4997 4.7674 -1.2178 10 1 1.3903 4.7881 0.9384 11 6 2.1975 -1.2688 0.0006 12 1 3.2737 -1.0962 -0.0120 13 6 1.7890 -2.1463 1.2132 14 6 2.0703 -3.5790 0.7136 15 7 2.0611 -3.5384 -0.7561 16 6 2.2861 -4.5871 -1.5722 17 8 2.2529 -4.4371 -2.7762 18 6 2.5757 -5.9313 -0.9962 19 8 2.6092 -6.0804 0.2019 20 6 2.8279 -7.1037 -1.9088 21 6 3.0982 -8.3543 -1.0697 22 6 1.5999 -7.3366 -2.7911 23 6 4.0423 -6.8106 -2.7921 24 6 1.7642 -2.1606 -1.1897 25 1 -0.3633 0.0918 -1.0236 26 1 -0.3633 -0.9323 0.4324 27 1 -0.3633 0.8406 0.5912 28 1 -0.1244 3.1383 -1.1884 29 1 2.4041 -1.9132 2.0824 30 1 0.7311 -2.0186 1.4427 31 1 3.0458 -3.9108 1.0691 32 1 1.2952 -4.2559 1.0730 33 1 2.2332 -8.5633 -0.4402 34 1 3.2801 -9.2024 -1.7298 35 1 3.9731 -8.1882 -0.4414 36 1 1.4077 -6.4456 -3.3889 37 1 1.7820 -8.1849 -3.4509 38 1 0.7347 -7.5455 -2.1619 39 1 4.9172 -6.6447 -2.1635 40 1 4.2250 -7.6588 -3.4519 41 1 3.8502 -5.9196 -3.3899 42 1 0.6974 -2.0451 -1.3816 43 1 2.3401 -1.9101 -2.0807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971222191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:25 Heat of formation + Delta-G solvation = -41.170901 kcal Electronic energy + Delta-G solvation = -23145.867698 eV Core-core repulsion = 19806.415184 eV Total energy + Delta-G solvation = -3339.452514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91212 -38.86460 -37.54662 -35.97536 -34.76773 -31.68857 -29.82164 -28.31114 -27.49584 -27.47974 -26.15166 -25.82133 -23.40764 -22.31033 -20.68037 -19.36441 -18.43170 -17.12969 -17.09852 -16.29262 -16.03932 -15.42515 -15.16097 -14.58332 -14.24482 -13.91314 -13.47026 -13.35101 -13.19795 -13.05508 -12.54644 -12.48745 -12.42611 -12.36010 -12.32215 -12.02684 -11.75653 -11.52003 -11.45464 -11.16898 -10.94420 -10.86833 -10.80945 -10.51813 -10.47513 -10.27294 -9.90514 -9.83651 -9.18354 -8.63657 -8.44177 -6.92131 -5.79799 -3.22262 1.00967 2.73856 3.07294 3.35120 3.42559 3.44493 3.98510 4.40923 4.43755 4.66231 4.66476 4.98746 5.11264 5.21521 5.33561 5.36332 5.43440 5.53938 5.56459 5.57757 5.62304 5.69525 5.75343 5.76345 5.85613 5.89587 6.00527 6.09371 6.10312 6.24282 6.33257 6.38881 6.53713 6.72477 6.80627 6.90888 7.35675 7.58407 7.65061 7.76624 8.05357 8.28660 9.14864 9.77609 10.23676 11.25242 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036499 B = 0.003650 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.950665 B = 7669.957993 C = 7838.164445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.157 4.157 14 C 0.108 3.892 15 N -0.586 5.586 16 C 0.482 3.518 17 O -0.516 6.516 18 C 0.361 3.639 19 O -0.417 6.417 20 C -0.094 4.094 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.143 4.143 24 C 0.082 3.918 25 H 0.029 0.971 26 H 0.001 0.999 27 H 0.052 0.948 28 H 0.253 0.747 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 -18.693 0.372 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.388 4.388 4 H 0.091 0.909 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.197 4.197 14 C -0.015 4.015 15 N -0.320 5.320 16 C 0.266 3.734 17 O -0.394 6.394 18 C 0.230 3.770 19 O -0.286 6.286 20 C -0.096 4.096 21 C -0.192 4.192 22 C -0.201 4.201 23 C -0.201 4.201 24 C -0.042 4.042 25 H 0.047 0.953 26 H 0.019 0.981 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.666 -18.558 0.310 18.919 hybrid contribution 0.243 0.936 0.137 0.977 sum 3.909 -17.622 0.447 18.055 Atomic orbital electron populations 1.20865 0.82101 0.95849 0.99608 1.43932 1.02092 0.99819 1.84766 1.19313 0.95376 0.84128 1.39989 0.90868 1.24940 0.97428 0.98340 0.98933 1.70123 1.16170 1.26383 1.42434 0.86139 0.78533 0.83928 0.77657 1.20294 1.21714 1.21556 1.21434 0.96462 0.85709 0.90153 0.90263 1.23288 1.03009 0.92870 1.00493 1.22177 1.01841 0.98665 0.78851 1.48659 1.65666 1.09608 1.08060 1.20544 0.80107 0.85671 0.87035 1.90704 1.50721 1.84203 1.13735 1.24963 0.72176 0.90143 0.89700 1.90387 1.34566 1.85994 1.17689 1.20943 0.98934 0.93357 0.96355 1.21772 1.02543 0.95510 0.99366 1.21902 0.95070 1.03772 0.99311 1.21904 0.95072 1.03777 0.99305 1.23306 1.01595 0.78465 1.00857 0.95312 0.98098 0.92948 0.93664 0.90339 0.90354 0.91156 0.91406 0.92052 0.91585 0.92025 0.90006 0.91306 0.92633 0.92602 0.91310 0.90001 0.90828 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 7.65 59.85 0.46 4.26 16 2 N -0.59 -14.09 2.97 -171.02 -0.51 -14.59 16 3 C -0.26 -6.88 9.69 -15.06 -0.15 -7.03 16 4 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 5 C 0.00 0.05 5.09 -17.43 -0.09 -0.04 16 6 N -0.91 -25.82 10.45 55.49 0.58 -25.24 16 7 Si 0.91 21.42 29.58 -169.99 -5.03 16.39 16 8 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.17 3.41 3.54 -65.78 -0.23 3.18 16 12 H 0.08 1.57 7.91 -51.93 -0.41 1.15 16 13 C -0.16 -2.54 6.49 -24.90 -0.16 -2.70 16 14 C 0.11 1.60 5.49 -3.06 -0.02 1.58 16 15 N -0.59 -9.75 3.33 -171.13 -0.57 -10.32 16 16 C 0.48 7.73 7.58 -11.76 -0.09 7.64 16 17 O -0.52 -9.15 13.64 5.48 0.07 -9.08 16 18 C 0.36 4.85 6.00 -29.80 -0.18 4.67 16 19 O -0.42 -5.92 13.74 5.98 0.08 -5.84 16 20 C -0.09 -1.00 0.76 -155.66 -0.12 -1.12 16 21 C -0.13 -1.20 7.76 37.16 0.29 -0.91 16 22 C -0.14 -1.42 8.29 37.16 0.31 -1.11 16 23 C -0.14 -1.42 8.29 37.16 0.31 -1.11 16 24 C 0.08 1.55 6.48 -2.51 -0.02 1.53 16 25 H 0.03 0.74 7.50 -51.93 -0.39 0.35 16 26 H 0.00 0.01 6.26 -51.93 -0.33 -0.31 16 27 H 0.05 1.35 6.95 -51.93 -0.36 0.99 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.31 6.25 -51.93 -0.32 0.99 16 31 H 0.07 0.99 7.58 -51.93 -0.39 0.59 16 32 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 33 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.08 0.97 6.43 -51.93 -0.33 0.64 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.97 6.43 -51.93 -0.33 0.64 16 42 H 0.07 1.48 7.15 -51.93 -0.37 1.11 16 43 H 0.08 1.56 8.04 -51.93 -0.42 1.15 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -29.26 337.50 -6.95 -36.21 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.98 Total: -1.45 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 0.31 Total: 8.82 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.50 Total: -50.15 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.16 Total: -14.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.26 -6.95 -36.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971222191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.958 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds