Wall clock time and date at job start Tue Mar 31 2020 02:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46792 * 2 1 4 4 C 1.50701 * 109.46599 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00524 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99959 * 179.97438 * 4 3 2 7 7 C 1.47487 * 125.66054 * 359.96009 * 6 4 3 8 8 C 1.55023 * 104.90536 * 204.04196 * 7 6 4 9 9 C 1.54489 * 101.53372 * 323.64621 * 8 7 6 10 10 C 1.47180 * 125.66438 * 180.02562 * 6 4 3 11 11 C 1.52519 * 110.09014 * 153.03460 * 9 8 7 12 12 N 1.47314 * 108.39047 * 173.02563 * 11 9 8 13 13 C 1.36936 * 121.05813 * 130.57548 * 12 11 9 14 14 H 1.07998 * 120.00498 * 205.76998 * 13 12 11 15 15 C 1.38821 * 119.99681 * 25.77702 * 13 12 11 16 16 N 1.31609 * 120.00222 * 16.74684 * 15 13 12 17 17 Si 1.86806 * 119.99648 * 196.75195 * 15 13 12 18 18 H 1.48498 * 109.47033 * 89.99482 * 17 15 13 19 19 H 1.48501 * 109.46780 * 209.99678 * 17 15 13 20 20 H 1.48497 * 109.46823 * 329.99743 * 17 15 13 21 21 C 1.47163 * 117.88259 * 310.59408 * 12 11 9 22 22 C 1.53274 * 108.53249 * 51.12789 * 21 12 11 23 23 O 1.42066 * 110.38010 * 276.05644 * 9 8 7 24 24 H 1.08997 * 109.46499 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46970 * 300.00202 * 1 2 3 26 26 H 1.08994 * 109.47103 * 60.00096 * 1 2 3 27 27 H 1.08996 * 109.46970 * 239.99798 * 2 1 3 28 28 H 1.09001 * 109.47114 * 119.99510 * 2 1 3 29 29 H 1.08996 * 109.47528 * 60.00140 * 3 2 1 30 30 H 1.09001 * 109.46891 * 299.99647 * 3 2 1 31 31 H 1.09004 * 110.35395 * 322.90066 * 7 6 4 32 32 H 1.09000 * 110.35310 * 85.07589 * 7 6 4 33 33 H 1.09001 * 111.01119 * 205.58039 * 8 7 6 34 34 H 1.08999 * 111.01358 * 81.71041 * 8 7 6 35 35 H 1.08993 * 109.91362 * 59.08408 * 10 6 4 36 36 H 1.09006 * 109.90669 * 297.81484 * 10 6 4 37 37 H 1.09001 * 109.67965 * 292.74472 * 11 9 8 38 38 H 1.08996 * 109.67944 * 53.26509 * 11 9 8 39 39 H 0.97004 * 119.99987 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.62559 * 170.83746 * 21 12 11 41 41 H 1.08994 * 109.62640 * 291.21790 * 21 12 11 42 42 H 1.09003 * 109.51055 * 187.18676 * 22 21 12 43 43 H 1.08994 * 109.51400 * 67.04172 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3922 0.0015 6 7 4.2210 2.6097 0.0002 7 6 3.6131 3.9535 -0.0017 8 6 4.6960 4.8801 -0.6118 9 6 5.9905 4.2607 -0.0398 10 6 5.6856 2.7549 0.0002 11 6 7.1634 4.5438 -0.9727 12 7 8.4005 4.0876 -0.3157 13 6 9.2989 3.2923 -0.9756 14 1 9.9523 2.6378 -0.4179 15 6 9.3699 3.3275 -2.3615 16 7 8.8335 4.3311 -3.0227 17 14 10.2268 1.9502 -3.2881 18 1 9.2436 0.8859 -3.6133 19 1 10.8095 2.4865 -4.5443 20 1 11.3084 1.3834 -2.4431 21 6 8.6398 4.5134 1.0725 22 6 7.3919 4.1923 1.9025 23 8 6.2431 4.7603 1.2659 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.7148 3.9624 -0.6191 32 1 3.3759 4.2637 1.0160 33 1 4.5696 5.9071 -0.2693 34 1 4.6860 4.8288 -1.7005 35 1 6.1070 2.2673 -0.8787 36 1 6.1021 2.3160 0.9069 37 1 7.0253 4.0047 -1.9100 38 1 7.2252 5.6139 -1.1703 39 1 8.8835 4.3559 -3.9911 40 1 9.4972 3.9759 1.4777 41 1 8.8343 5.5855 1.0982 42 1 7.5005 4.6148 2.9015 43 1 7.2708 3.1115 1.9748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972224632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:56 Heat of formation + Delta-G solvation = -58.134631 kcal Electronic energy + Delta-G solvation = -23673.113379 eV Core-core repulsion = 20332.925263 eV Total energy + Delta-G solvation = -3340.188116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21377 -38.71879 -36.13939 -34.47745 -34.38441 -31.74562 -31.22709 -29.11626 -28.50873 -27.24292 -25.46748 -23.30644 -23.22515 -21.69222 -21.05899 -19.16567 -18.65733 -17.08857 -16.82217 -16.39812 -15.78247 -15.18846 -14.91248 -14.56532 -14.35598 -14.19631 -13.59701 -13.49095 -13.33997 -13.11602 -12.83709 -12.61762 -12.25221 -12.00353 -11.76550 -11.68835 -11.43223 -11.27477 -11.09785 -11.04625 -10.84004 -10.79690 -10.75819 -10.47041 -10.25842 -9.93078 -9.61335 -9.54206 -9.06714 -8.55393 -8.34752 -6.77461 -5.85998 -3.28263 2.86145 3.21373 3.36756 3.43772 3.44658 4.19891 4.43325 4.59488 4.81350 4.83813 4.91113 5.02441 5.21899 5.33406 5.35613 5.39847 5.41749 5.50661 5.55741 5.63235 5.68617 5.81035 5.84278 5.89820 6.03518 6.05990 6.07926 6.19161 6.22341 6.24865 6.31314 6.48909 6.59169 6.61696 6.76402 7.03099 7.40312 7.71565 7.78049 7.88252 8.30628 8.40186 9.09561 9.72459 10.28985 11.22565 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.005359 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.639533 B = 5223.580289 C = 6088.988234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.134 4.134 4 C 0.521 3.479 5 O -0.545 6.545 6 N -0.617 5.617 7 C 0.103 3.897 8 C -0.118 4.118 9 C 0.085 3.915 10 C 0.097 3.903 11 C 0.163 3.837 12 N -0.595 5.595 13 C -0.253 4.253 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.278 1.278 21 C 0.110 3.890 22 C 0.044 3.956 23 O -0.376 6.376 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.033 0.967 39 H 0.255 0.745 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 -0.229 6.397 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.174 4.174 4 C 0.310 3.690 5 O -0.423 6.423 6 N -0.351 5.351 7 C -0.020 4.020 8 C -0.156 4.156 9 C 0.043 3.957 10 C -0.025 4.025 11 C 0.037 3.963 12 N -0.319 5.319 13 C -0.382 4.382 14 H 0.087 0.913 15 C -0.194 4.194 16 N -0.549 5.549 17 Si 0.732 3.268 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.016 4.016 22 C -0.034 4.034 23 O -0.295 6.295 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.102 0.898 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.389 -0.712 6.303 15.725 hybrid contribution 0.703 -0.705 -0.609 1.167 sum -13.686 -1.416 5.694 14.891 Atomic orbital electron populations 1.21788 0.95626 1.01788 1.01673 1.21288 0.95025 0.94916 1.03585 1.21683 0.91891 0.99837 1.04031 1.20399 0.89934 0.82327 0.76378 1.90702 1.70544 1.30656 1.50359 1.48699 1.08010 1.05662 1.72727 1.22356 0.96567 0.82171 1.00909 1.22704 0.92481 0.99437 1.00960 1.22690 0.96867 0.90616 0.85509 1.22493 0.79037 0.97824 1.03167 1.21250 0.82072 0.98608 0.94382 1.44123 1.19809 1.58543 1.09449 1.19206 1.15139 1.14635 0.89223 0.91287 1.25001 0.99848 0.97377 0.97223 1.70002 1.49014 1.28839 1.07043 0.86282 0.79293 0.81845 0.79370 1.21266 1.21650 1.20337 1.21580 0.95248 0.97763 0.87037 1.23104 0.87059 0.97642 0.95615 1.87656 1.46797 1.65836 1.29213 0.92523 0.92777 0.92720 0.91228 0.91319 0.89231 0.89134 0.90920 0.91183 0.89062 0.89050 0.89986 0.91338 0.88506 0.94882 0.93501 0.91895 0.95480 0.89813 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.11 -1.22 5.22 -26.73 -0.14 -1.36 16 3 C -0.13 -1.52 4.71 -27.88 -0.13 -1.65 16 4 C 0.52 8.59 7.85 -10.98 -0.09 8.50 16 5 O -0.54 -11.27 16.31 5.56 0.09 -11.18 16 6 N -0.62 -10.15 3.33 -170.67 -0.57 -10.72 16 7 C 0.10 1.32 6.69 -2.43 -0.02 1.31 16 8 C -0.12 -1.74 6.21 -24.88 -0.15 -1.89 16 9 C 0.08 1.60 0.81 -89.73 -0.07 1.53 16 10 C 0.10 1.90 5.96 -3.32 -0.02 1.88 16 11 C 0.16 3.77 3.98 -3.84 -0.02 3.75 16 12 N -0.60 -14.70 2.97 -172.17 -0.51 -15.21 16 13 C -0.25 -6.86 9.66 -15.06 -0.15 -7.00 16 14 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 15 C 0.00 0.11 4.96 -17.43 -0.09 0.03 16 16 N -0.90 -25.65 11.12 55.49 0.62 -25.04 16 17 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.11 2.28 6.72 -3.54 -0.02 2.26 16 22 C 0.04 0.78 6.76 37.30 0.25 1.04 16 23 O -0.38 -7.07 10.26 -35.23 -0.36 -7.43 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 28 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 31 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.34 8.01 -51.93 -0.42 0.92 16 35 H 0.08 1.86 7.61 -51.93 -0.40 1.46 16 36 H 0.07 1.43 6.01 -51.93 -0.31 1.12 16 37 H 0.10 2.49 5.90 -51.93 -0.31 2.18 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.05 0.87 6.22 -51.93 -0.32 0.55 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -31.72 337.05 -8.11 -39.83 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.16 Total: 0.35 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.27 Total: 7.53 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.46 Total: -50.97 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.27 Total: -18.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.72 -8.11 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972224632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.306 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds