Wall clock time and date at job start Tue Mar 31 2020 02:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46899 * 2 1 4 4 C 1.50690 * 109.47430 * 120.00405 * 2 1 3 5 5 O 1.21280 * 120.00179 * 265.79485 * 4 2 1 6 6 N 1.34778 * 120.00435 * 85.79600 * 4 2 1 7 7 C 1.47088 * 125.62217 * 5.00403 * 6 4 2 8 8 C 1.54465 * 107.29715 * 180.97005 * 7 6 4 9 9 C 1.54356 * 102.87078 * 21.47786 * 8 7 6 10 10 C 1.47567 * 125.63467 * 184.96221 * 6 4 2 11 11 C 1.51953 * 110.49307 * 207.76471 * 9 8 7 12 12 N 1.47336 * 108.61645 * 186.50277 * 11 9 8 13 13 C 1.36931 * 121.07143 * 229.15456 * 12 11 9 14 14 H 1.08004 * 119.99958 * 149.91070 * 13 12 11 15 15 C 1.38811 * 120.00342 * 329.91143 * 13 12 11 16 16 N 1.31624 * 119.99885 * 350.19924 * 15 13 12 17 17 Si 1.86805 * 120.00203 * 170.19721 * 15 13 12 18 18 H 1.48500 * 109.47103 * 270.00238 * 17 15 13 19 19 H 1.48498 * 109.46892 * 30.00193 * 17 15 13 20 20 H 1.48498 * 109.47043 * 150.00177 * 17 15 13 21 21 C 1.47151 * 117.85021 * 48.88467 * 12 11 9 22 22 C 1.53279 * 108.56634 * 309.02872 * 21 12 11 23 23 O 1.41885 * 110.76088 * 83.68199 * 9 8 7 24 24 H 1.09007 * 109.46606 * 299.99594 * 1 2 3 25 25 H 1.08998 * 109.47719 * 59.99538 * 1 2 3 26 26 H 1.08998 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46641 * 240.00900 * 2 1 3 28 28 H 1.09008 * 109.47392 * 184.75513 * 3 2 1 29 29 H 1.09006 * 109.47638 * 304.75286 * 3 2 1 30 30 H 1.09000 * 109.47261 * 64.75677 * 3 2 1 31 31 H 1.09004 * 109.87484 * 300.39269 * 7 6 4 32 32 H 1.08989 * 109.88256 * 61.54394 * 7 6 4 33 33 H 1.09000 * 110.73295 * 263.12809 * 8 7 6 34 34 H 1.08996 * 110.73416 * 139.82127 * 8 7 6 35 35 H 1.09004 * 110.37388 * 37.88910 * 10 6 4 36 36 H 1.09001 * 110.47016 * 275.59510 * 10 6 4 37 37 H 1.09002 * 109.62153 * 66.67358 * 11 9 8 38 38 H 1.08997 * 109.51574 * 306.26529 * 11 9 8 39 39 H 0.97004 * 119.99975 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.62531 * 68.75561 * 21 12 11 41 41 H 1.09009 * 109.61932 * 189.30780 * 21 12 11 42 42 H 1.09001 * 109.50896 * 172.90488 * 22 21 12 43 43 H 1.09001 * 109.51192 * 293.00290 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.3072 -0.0764 2.2270 6 7 2.1764 -2.0505 1.2232 7 6 1.9810 -2.9269 0.0582 8 6 2.2301 -4.3773 0.5278 9 6 2.0171 -4.2860 2.0538 10 6 2.5570 -2.8804 2.3825 11 6 2.8354 -5.3477 2.7696 12 7 2.4838 -5.3273 4.2002 13 6 3.4539 -5.2919 5.1660 14 1 3.2571 -4.8087 6.1116 15 6 4.6903 -5.8769 4.9296 16 7 4.8697 -6.6290 3.8644 17 14 6.0997 -5.5968 6.1232 18 1 6.8672 -4.3947 5.7096 19 1 5.5572 -5.3915 7.4902 20 1 6.9950 -6.7815 6.1187 21 6 1.0564 -5.3402 4.5576 22 6 0.3458 -4.2346 3.7689 23 8 0.6390 -4.3861 2.3762 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 3.1267 1.4437 -0.0852 29 1 1.6087 1.9804 -0.8444 30 1 1.7478 1.9311 0.9295 31 1 0.9610 -2.8277 -0.3132 32 1 2.6905 -2.6644 -0.7263 33 1 3.2495 -4.6875 0.2982 34 1 1.5078 -5.0581 0.0774 35 1 2.0925 -2.4983 3.2916 36 1 3.6411 -2.9065 2.4932 37 1 3.8975 -5.1339 2.6495 38 1 2.6078 -6.3274 2.3496 39 1 5.7338 -7.0375 3.6990 40 1 0.6238 -6.3077 4.3024 41 1 0.9449 -5.1569 5.6263 42 1 -0.7303 -4.3103 3.9247 43 1 0.6956 -3.2607 4.1114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972265776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:58 Heat of formation + Delta-G solvation = -56.611218 kcal Electronic energy + Delta-G solvation = -24032.713261 eV Core-core repulsion = 20692.591205 eV Total energy + Delta-G solvation = -3340.122056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.29735 -38.78894 -36.11767 -34.45325 -34.37632 -31.66576 -31.22757 -29.08845 -27.70921 -27.22254 -25.95972 -23.69877 -23.26158 -22.08072 -21.08528 -18.87561 -18.65680 -17.24031 -16.96503 -16.14971 -15.42008 -15.15192 -14.88847 -14.47365 -14.30237 -14.12939 -13.54490 -13.47064 -13.20248 -12.98045 -12.77692 -12.73589 -12.32450 -12.06689 -11.87341 -11.78239 -11.38354 -11.25069 -11.10229 -11.03885 -10.98288 -10.83902 -10.75042 -10.45425 -10.25718 -9.99870 -9.55386 -9.49524 -9.04061 -8.57071 -8.31197 -6.71087 -5.85991 -3.34019 2.84625 3.22722 3.34908 3.41632 3.42610 4.21264 4.41578 4.55022 4.77454 4.87321 4.95060 5.03043 5.20931 5.34600 5.35658 5.41988 5.50918 5.54645 5.66808 5.69802 5.72050 5.80538 5.83450 5.89015 6.03753 6.07961 6.09084 6.16274 6.21166 6.27196 6.29712 6.48921 6.56778 6.65177 6.79051 7.05024 7.42309 7.71222 7.78296 7.92464 8.33682 8.40279 9.10548 9.71288 10.30172 11.22327 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.005360 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.983064 B = 5222.353511 C = 5683.132338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.528 3.472 5 O -0.546 6.546 6 N -0.613 5.613 7 C 0.105 3.895 8 C -0.116 4.116 9 C 0.085 3.915 10 C 0.095 3.905 11 C 0.164 3.836 12 N -0.595 5.595 13 C -0.253 4.253 14 H 0.067 0.933 15 C 0.006 3.994 16 N -0.907 5.907 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.278 1.278 20 H -0.290 1.290 21 C 0.110 3.890 22 C 0.045 3.955 23 O -0.374 6.374 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.033 0.967 39 H 0.255 0.745 40 H 0.027 0.973 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 8.345 -10.751 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.193 4.193 4 C 0.316 3.684 5 O -0.423 6.423 6 N -0.346 5.346 7 C -0.018 4.018 8 C -0.154 4.154 9 C 0.043 3.957 10 C -0.027 4.027 11 C 0.038 3.962 12 N -0.319 5.319 13 C -0.382 4.382 14 H 0.085 0.915 15 C -0.192 4.192 16 N -0.551 5.551 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.216 1.216 21 C -0.016 4.016 22 C -0.033 4.033 23 O -0.293 6.293 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.534 8.632 -10.369 15.453 hybrid contribution 0.965 -0.015 0.771 1.235 sum -6.569 8.616 -9.598 14.475 Atomic orbital electron populations 1.21702 0.92715 1.02645 1.02605 1.21245 0.97765 0.97633 0.96536 1.21661 1.01123 0.93932 1.02563 1.20300 0.77594 0.80606 0.89859 1.90683 1.51014 1.65126 1.35517 1.48654 1.67971 1.05607 1.12406 1.22063 1.00824 0.90493 0.88435 1.22542 1.03375 0.95113 0.94408 1.22657 0.83663 0.94969 0.94458 1.22742 1.00642 0.90325 0.89017 1.21093 0.98714 0.93247 0.83151 1.44042 0.99653 1.86533 1.01635 1.19184 0.92708 1.29631 0.96685 0.91506 1.25139 0.99387 0.96727 0.97976 1.69950 1.23435 1.33600 1.28117 0.86240 0.82192 0.77266 0.80797 1.21297 1.20338 1.21574 1.21595 0.86628 0.95667 0.97719 1.23102 0.99053 0.99085 0.82096 1.87612 1.23605 1.93309 1.24736 0.92024 0.91582 0.92011 0.89428 0.92517 0.92104 0.91370 0.91444 0.91701 0.88943 0.89244 0.90157 0.90474 0.88537 0.94884 0.93467 0.95475 0.91902 0.89947 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 2 C -0.11 -1.30 2.81 -91.78 -0.26 -1.56 16 3 C -0.14 -1.48 8.83 37.16 0.33 -1.16 16 4 C 0.53 8.77 6.94 -10.99 -0.08 8.69 16 5 O -0.55 -11.24 16.31 5.56 0.09 -11.15 16 6 N -0.61 -10.11 3.33 -170.76 -0.57 -10.68 16 7 C 0.11 1.37 6.10 -2.95 -0.02 1.35 16 8 C -0.12 -1.71 6.12 -25.25 -0.15 -1.87 16 9 C 0.08 1.59 0.83 -89.86 -0.07 1.52 16 10 C 0.09 1.84 5.82 -2.87 -0.02 1.83 16 11 C 0.16 3.76 3.98 -4.12 -0.02 3.75 16 12 N -0.59 -14.65 2.98 -172.49 -0.51 -15.16 16 13 C -0.25 -6.81 9.65 -15.06 -0.15 -6.96 16 14 H 0.07 1.79 7.85 -52.48 -0.41 1.37 16 15 C 0.01 0.17 5.09 -17.43 -0.09 0.08 16 16 N -0.91 -25.44 11.03 55.49 0.61 -24.83 16 17 Si 0.91 21.54 29.57 -169.99 -5.03 16.52 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.11 2.31 6.72 -3.54 -0.02 2.29 16 22 C 0.04 0.82 6.78 37.30 0.25 1.07 16 23 O -0.37 -7.13 10.28 -35.22 -0.36 -7.50 16 24 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.65 7.60 -51.93 -0.39 0.25 16 27 H 0.09 0.87 7.28 -51.93 -0.38 0.49 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.85 7.69 -51.93 -0.40 0.45 16 31 H 0.07 0.78 7.60 -51.93 -0.39 0.39 16 32 H 0.06 0.70 7.99 -51.94 -0.42 0.28 16 33 H 0.09 1.31 8.00 -51.93 -0.42 0.90 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.74 6.05 -51.93 -0.31 1.43 16 36 H 0.08 1.63 7.80 -51.93 -0.40 1.22 16 37 H 0.10 2.44 6.03 -51.93 -0.31 2.12 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 1.26 7.96 -51.92 -0.41 0.85 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.89 6.25 -51.93 -0.32 0.56 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -31.34 335.23 -7.76 -39.10 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.10 Total: 0.69 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 0.05 Total: 7.95 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.47 Total: -50.67 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.27 Total: -18.65 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.34 -7.76 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972265776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.507 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds