Wall clock time and date at job start Tue Mar 31 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 C 1.50702 * 109.46870 * 119.99903 * 2 1 3 5 5 O 1.21283 * 119.99839 * 266.13994 * 4 2 1 6 6 N 1.34771 * 120.00318 * 86.14582 * 4 2 1 7 7 C 1.47088 * 125.62312 * 354.94251 * 6 4 2 8 8 C 1.54470 * 107.41945 * 178.95613 * 7 6 4 9 9 C 1.54593 * 102.75956 * 338.67337 * 8 7 6 10 10 C 1.47568 * 125.63341 * 174.98699 * 6 4 2 11 11 C 1.52361 * 110.45508 * 152.28899 * 9 8 7 12 12 N 1.47334 * 108.40600 * 173.49887 * 11 9 8 13 13 C 1.36931 * 121.07273 * 130.80072 * 12 11 9 14 14 H 1.07994 * 120.00538 * 205.53395 * 13 12 11 15 15 C 1.38817 * 120.00047 * 25.53655 * 13 12 11 16 16 N 1.31621 * 119.99696 * 16.10037 * 15 13 12 17 17 Si 1.86799 * 120.00161 * 196.10089 * 15 13 12 18 18 H 1.48497 * 109.46827 * 60.00213 * 17 15 13 19 19 H 1.48502 * 109.46953 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47017 * 299.99911 * 17 15 13 21 21 C 1.47164 * 117.85225 * 310.82445 * 12 11 9 22 22 C 1.53272 * 108.56069 * 51.21911 * 21 12 11 23 23 O 1.41877 * 110.64730 * 276.18215 * 9 8 7 24 24 H 1.08999 * 109.46939 * 184.56317 * 1 2 3 25 25 H 1.08995 * 109.46872 * 304.56232 * 1 2 3 26 26 H 1.08996 * 109.46826 * 64.56111 * 1 2 3 27 27 H 1.08994 * 109.47465 * 239.99908 * 2 1 3 28 28 H 1.09005 * 109.47327 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47236 * 300.00039 * 3 2 1 30 30 H 1.09004 * 109.47429 * 60.00376 * 3 2 1 31 31 H 1.08997 * 109.88019 * 298.45294 * 7 6 4 32 32 H 1.09002 * 109.87866 * 59.45893 * 7 6 4 33 33 H 1.09000 * 110.73124 * 96.93235 * 8 7 6 34 34 H 1.09008 * 110.73112 * 220.23998 * 8 7 6 35 35 H 1.08994 * 110.37528 * 322.11577 * 10 6 4 36 36 H 1.08997 * 110.37833 * 84.46940 * 10 6 4 37 37 H 1.09001 * 109.67798 * 293.23117 * 11 9 8 38 38 H 1.08999 * 109.67312 * 53.77362 * 11 9 8 39 39 H 0.97011 * 119.99768 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.61981 * 291.49784 * 21 12 11 41 41 H 1.09001 * 109.77470 * 171.02960 * 21 12 11 42 42 H 1.08995 * 109.51570 * 187.08287 * 22 21 12 43 43 H 1.09006 * 109.51214 * 66.93043 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3011 -0.0769 2.2292 6 7 2.1830 -2.0496 1.2212 7 6 1.7981 -2.9474 0.1215 8 6 2.1804 -4.3838 0.5419 9 6 3.2542 -4.1472 1.6286 10 6 2.7604 -2.8574 2.3128 11 6 3.2727 -5.3042 2.6197 12 7 4.4087 -5.1120 3.5379 13 6 4.2446 -5.2042 4.8943 14 1 4.9199 -4.6832 5.5566 15 6 3.2101 -5.9675 5.4179 16 7 2.5896 -6.8448 4.6578 17 14 2.6986 -5.7495 7.2013 18 1 2.2582 -4.3487 7.4222 19 1 1.5800 -6.6755 7.5121 20 1 3.8514 -6.0517 8.0873 21 6 5.7254 -4.8172 2.9505 22 6 5.5719 -3.6487 1.9705 23 8 4.5289 -3.9497 1.0377 24 1 -0.3633 -1.0244 0.0818 25 1 -0.3633 0.5830 0.8463 26 1 -0.3633 0.4414 -0.9280 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4426 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 0.7234 -2.8849 -0.0492 32 1 2.3341 -2.6720 -0.7867 33 1 1.3191 -4.9062 0.9582 34 1 2.5966 -4.9348 -0.3016 35 1 3.5945 -2.3297 2.7751 36 1 1.9984 -3.0903 3.0566 37 1 2.3413 -5.3176 3.1858 38 1 3.3900 -6.2455 2.0827 39 1 1.8669 -7.3785 5.0238 40 1 6.0938 -5.6946 2.4190 41 1 6.4280 -4.5446 3.7380 42 1 6.5083 -3.4985 1.4334 43 1 5.3177 -2.7429 2.5210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972265779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:00 Heat of formation + Delta-G solvation = -55.261120 kcal Electronic energy + Delta-G solvation = -24021.284901 eV Core-core repulsion = 20681.221390 eV Total energy + Delta-G solvation = -3340.063512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28948 -38.78457 -36.11682 -34.47118 -34.38569 -31.66022 -31.21629 -29.08820 -27.72477 -27.23084 -25.95596 -23.71231 -23.27266 -22.07179 -21.08473 -18.84610 -18.69450 -17.32046 -16.93141 -16.15471 -15.31280 -15.17128 -14.95817 -14.38069 -14.32623 -14.16618 -13.65154 -13.49549 -13.15998 -13.01103 -12.74980 -12.72117 -12.30593 -12.09955 -11.87406 -11.78880 -11.41048 -11.27407 -11.11912 -11.05597 -10.96497 -10.83031 -10.74638 -10.46086 -10.29821 -9.93824 -9.55786 -9.49286 -9.06918 -8.55012 -8.31362 -6.77244 -5.86076 -3.28302 2.84967 3.22310 3.36070 3.41471 3.44083 4.20812 4.42470 4.54593 4.76841 4.85786 4.93612 5.00328 5.26623 5.28536 5.35185 5.41708 5.48609 5.54178 5.62184 5.69956 5.71912 5.81280 5.82519 5.88415 6.04110 6.05726 6.07722 6.15758 6.20542 6.26214 6.28220 6.48492 6.56083 6.63996 6.77686 7.03934 7.40276 7.70561 7.78055 7.91888 8.30383 8.40305 9.09483 9.72182 10.28902 11.22420 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.005460 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.910078 B = 5127.438328 C = 5561.234194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.133 4.133 4 C 0.528 3.472 5 O -0.546 6.546 6 N -0.613 5.613 7 C 0.105 3.895 8 C -0.116 4.116 9 C 0.085 3.915 10 C 0.095 3.905 11 C 0.163 3.837 12 N -0.595 5.595 13 C -0.252 4.252 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.906 5.906 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.282 1.282 21 C 0.110 3.890 22 C 0.045 3.955 23 O -0.374 6.374 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.033 0.967 39 H 0.255 0.745 40 H 0.027 0.973 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 8.871 -12.507 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.191 4.191 4 C 0.316 3.684 5 O -0.423 6.423 6 N -0.347 5.347 7 C -0.018 4.018 8 C -0.154 4.154 9 C 0.043 3.957 10 C -0.027 4.027 11 C 0.037 3.963 12 N -0.319 5.319 13 C -0.381 4.381 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.550 5.550 17 Si 0.733 3.267 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.208 1.208 21 C -0.016 4.016 22 C -0.033 4.033 23 O -0.293 6.293 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.854 9.154 -12.085 15.427 hybrid contribution -0.245 -0.081 1.164 1.193 sum -3.099 9.074 -10.921 14.533 Atomic orbital electron populations 1.21724 0.92838 1.02555 1.02663 1.21253 0.97679 0.97700 0.96588 1.21639 1.01341 0.93871 1.02258 1.20308 0.77809 0.80569 0.89673 1.90686 1.51435 1.65284 1.34917 1.48656 1.61365 1.05607 1.19031 1.22059 0.99258 0.90248 0.90236 1.22587 0.98307 0.95178 0.99367 1.22776 0.83537 0.95564 0.93866 1.22727 0.98767 0.91614 0.89549 1.21194 0.94153 0.91430 0.89544 1.44105 1.01816 1.83312 1.02640 1.19160 1.13791 1.23712 0.81456 0.91360 1.24997 1.00746 0.95886 0.97866 1.69992 1.25770 1.23462 1.35821 0.86351 0.78126 0.77605 0.84645 1.20896 1.21514 1.20805 1.21577 0.89649 0.95092 0.95305 1.23103 0.89756 0.98245 0.92217 1.87612 1.16638 1.91306 1.33740 0.92167 0.91935 0.91552 0.89304 0.92458 0.92109 0.91512 0.91664 0.91513 0.88954 0.89222 0.90103 0.90490 0.88341 0.94891 0.93453 0.95511 0.91887 0.89919 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 2 C -0.11 -1.31 2.73 -91.77 -0.25 -1.56 16 3 C -0.13 -1.48 8.74 37.16 0.32 -1.15 16 4 C 0.53 8.78 6.94 -10.99 -0.08 8.70 16 5 O -0.55 -11.26 16.42 5.55 0.09 -11.17 16 6 N -0.61 -10.12 3.33 -170.75 -0.57 -10.69 16 7 C 0.11 1.37 6.31 -2.95 -0.02 1.35 16 8 C -0.12 -1.71 6.14 -25.12 -0.15 -1.86 16 9 C 0.08 1.60 0.83 -89.52 -0.07 1.52 16 10 C 0.10 1.86 5.83 -2.87 -0.02 1.84 16 11 C 0.16 3.74 4.08 -3.91 -0.02 3.72 16 12 N -0.59 -14.64 2.99 -172.25 -0.51 -15.15 16 13 C -0.25 -6.80 9.67 -15.06 -0.15 -6.94 16 14 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 15 C 0.00 0.09 4.98 -17.43 -0.09 0.01 16 16 N -0.91 -25.42 11.07 55.49 0.61 -24.81 16 17 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.11 2.30 6.71 -3.54 -0.02 2.28 16 22 C 0.04 0.82 6.78 37.30 0.25 1.08 16 23 O -0.37 -7.16 10.28 -35.22 -0.36 -7.52 16 24 H 0.06 0.58 7.23 -51.93 -0.38 0.21 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.90 7.23 -51.93 -0.38 0.53 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 31 H 0.07 0.70 7.23 -51.93 -0.38 0.33 16 32 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 33 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 34 H 0.09 1.21 8.14 -51.92 -0.42 0.78 16 35 H 0.08 1.76 6.05 -51.93 -0.31 1.44 16 36 H 0.08 1.62 7.82 -51.93 -0.41 1.22 16 37 H 0.10 2.48 5.90 -51.93 -0.31 2.18 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.05 0.90 6.25 -51.93 -0.32 0.57 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -31.41 334.45 -7.72 -39.13 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.04 Total: 0.70 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 0.06 Total: 7.95 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.47 Total: -50.65 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.27 Total: -18.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.41 -7.72 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972265779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.135 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds