Wall clock time and date at job start Tue Mar 31 2020 02:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.33233 * 2 1 4 4 C 1.54480 * 110.46899 * 237.68189 * 2 1 3 5 5 C 1.54684 * 104.08000 * 217.05189 * 4 2 1 6 6 C 1.54478 * 103.97913 * 0.13676 * 5 4 2 7 7 H 1.08999 * 110.36987 * 264.96552 * 6 5 4 8 8 C 1.50698 * 110.37506 * 142.73839 * 6 5 4 9 9 O 1.21284 * 119.99960 * 246.55431 * 8 6 5 10 10 N 1.34776 * 120.00027 * 66.54158 * 8 6 5 11 11 C 1.47429 * 125.64917 * 359.97438 * 10 8 6 12 12 C 1.54913 * 104.83448 * 155.91041 * 11 10 8 13 13 C 1.55159 * 101.58109 * 37.00803 * 12 11 10 14 14 H 1.08993 * 110.71792 * 83.03500 * 13 12 11 15 15 N 1.46493 * 110.71989 * 206.13590 * 13 12 11 16 16 C 1.46508 * 120.00145 * 58.54622 * 15 13 12 17 17 C 1.36937 * 119.99991 * 238.54679 * 15 13 12 18 18 H 1.07995 * 119.99699 * 334.75841 * 17 15 13 19 19 C 1.38818 * 119.99996 * 154.75923 * 17 15 13 20 20 N 1.31618 * 119.99903 * 4.34153 * 19 17 15 21 21 Si 1.86800 * 119.99547 * 184.33886 * 19 17 15 22 22 H 1.48496 * 109.47372 * 90.00305 * 21 19 17 23 23 H 1.48506 * 109.46573 * 209.99724 * 21 19 17 24 24 H 1.48498 * 109.47266 * 329.99623 * 21 19 17 25 25 C 1.47024 * 125.65051 * 180.02562 * 10 8 6 26 26 O 1.44426 * 110.37115 * 122.24464 * 2 1 3 27 27 H 1.08993 * 109.47291 * 299.20653 * 1 2 3 28 28 H 1.08999 * 109.46789 * 59.20903 * 1 2 3 29 29 H 1.08997 * 109.46958 * 179.19925 * 1 2 3 30 30 H 1.09003 * 110.50999 * 335.79086 * 4 2 1 31 31 H 1.09001 * 110.51109 * 98.49564 * 4 2 1 32 32 H 1.08997 * 110.61270 * 241.49045 * 5 4 2 33 33 H 1.08992 * 110.48718 * 118.72359 * 5 4 2 34 34 H 1.09003 * 110.36907 * 37.06813 * 11 10 8 35 35 H 1.09002 * 110.45513 * 274.79609 * 11 10 8 36 36 H 1.08995 * 111.00038 * 278.93612 * 12 11 10 37 37 H 1.08997 * 111.03517 * 155.09439 * 12 11 10 38 38 H 1.08996 * 109.46810 * 264.51667 * 16 15 13 39 39 H 1.08996 * 109.46974 * 144.51481 * 16 15 13 40 40 H 1.09001 * 109.46958 * 24.51049 * 16 15 13 41 41 H 0.96996 * 119.99876 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.87922 * 61.59981 * 25 10 8 43 43 H 1.09004 * 109.87884 * 300.44013 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0702 -0.7737 -1.2231 5 6 3.3237 -1.5023 -0.6838 6 6 3.3882 -1.0840 0.8018 7 1 4.0522 -0.2286 0.9266 8 6 3.8548 -2.2375 1.6519 9 8 3.0994 -2.7439 2.4543 10 7 5.1115 -2.7064 1.5204 11 6 6.1291 -2.1876 0.5884 12 6 7.4860 -2.5857 1.2209 13 6 7.1560 -3.9812 1.8135 14 1 7.2359 -4.7536 1.0487 15 7 8.0334 -4.2837 2.9469 16 6 8.0589 -3.3949 4.1113 17 6 8.8299 -5.3972 2.9180 18 1 8.5512 -6.2448 2.3095 19 6 9.9956 -5.4365 3.6708 20 7 10.2918 -4.4397 4.4777 21 14 11.1435 -6.9043 3.5388 22 1 12.1398 -6.6585 2.4654 23 1 11.8471 -7.1001 4.8318 24 1 10.3562 -8.1208 3.2143 25 6 5.6943 -3.8209 2.2820 26 8 2.0328 -0.7224 1.1451 27 1 -0.3633 0.5014 0.8969 28 1 -0.3633 0.5261 -0.8828 29 1 -0.3633 -1.0275 -0.0144 30 1 1.3314 -1.4929 -1.5768 31 1 2.3451 -0.0835 -2.0207 32 1 4.2172 -1.1714 -1.2130 33 1 3.2045 -2.5822 -0.7717 34 1 6.0519 -1.1033 0.5075 35 1 6.0178 -2.6493 -0.3927 36 1 7.7715 -1.8855 2.0058 37 1 8.2652 -2.6579 0.4621 38 1 8.8804 -2.6859 4.0092 39 1 8.1992 -3.9858 5.0163 40 1 7.1159 -2.8517 4.1744 41 1 11.1064 -4.4671 5.0034 42 1 5.1384 -4.7369 2.0824 43 1 5.6694 -3.5944 3.3480 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972381718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:38 Heat of formation + Delta-G solvation = -49.039649 kcal Electronic energy + Delta-G solvation = -23004.736036 eV Core-core repulsion = 19664.942308 eV Total energy + Delta-G solvation = -3339.793728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43114 -38.92528 -37.20528 -34.82787 -32.52382 -32.25265 -31.30595 -29.76655 -28.24081 -26.52069 -26.04152 -23.73199 -22.57749 -22.12326 -21.28039 -19.42642 -19.07694 -17.29980 -17.00964 -16.58758 -16.23503 -15.52687 -15.41882 -14.57587 -14.28949 -14.06302 -13.69020 -13.34707 -13.30076 -13.06355 -12.65092 -12.55198 -12.44679 -12.29060 -11.95148 -11.76547 -11.66292 -11.43657 -11.14073 -11.00799 -10.88532 -10.84180 -10.58384 -10.37872 -10.26469 -10.10337 -9.91473 -9.90435 -9.44478 -8.55335 -8.34260 -6.82010 -5.78439 -3.26471 2.74483 2.90014 3.35515 3.41969 3.43208 3.82146 4.24807 4.38613 4.44235 4.60031 4.68528 4.87042 4.99112 5.01057 5.10230 5.19934 5.25191 5.37192 5.39639 5.47735 5.51239 5.53813 5.60167 5.73093 5.75275 5.79132 5.89429 5.89848 5.98735 6.29865 6.37406 6.48291 6.58886 6.70985 6.84738 6.86108 7.46517 7.71039 7.75768 7.82473 8.34418 8.38241 9.19635 9.79620 10.29183 11.25947 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046761 B = 0.003362 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.648258 B = 8325.616024 C = 8477.826603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.070 0.930 4 C -0.149 4.149 5 C -0.143 4.143 6 C 0.063 3.937 7 H 0.092 0.908 8 C 0.529 3.471 9 O -0.527 6.527 10 N -0.609 5.609 11 C 0.098 3.902 12 C -0.151 4.151 13 C 0.174 3.826 14 H 0.079 0.921 15 N -0.590 5.590 16 C 0.163 3.837 17 C -0.261 4.261 18 H 0.070 0.930 19 C 0.008 3.992 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.087 3.913 26 O -0.342 6.342 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.054 0.946 40 H -0.005 1.005 41 H 0.253 0.747 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 10.034 -13.230 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.181 4.181 6 C 0.002 3.998 7 H 0.110 0.890 8 C 0.316 3.684 9 O -0.402 6.402 10 N -0.345 5.345 11 C -0.026 4.026 12 C -0.192 4.192 13 C 0.063 3.937 14 H 0.097 0.903 15 N -0.311 5.311 16 C 0.019 3.981 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.191 4.191 20 N -0.552 5.552 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.037 4.037 26 O -0.261 6.261 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.014 0.986 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.258 9.729 -12.409 20.601 hybrid contribution 0.927 -0.580 -0.223 1.116 sum -12.331 9.149 -12.632 19.883 Atomic orbital electron populations 1.21786 0.92935 1.03133 1.02432 1.23064 0.95678 0.95435 0.85079 0.91165 1.23045 0.97483 0.99825 0.98317 1.22934 0.99198 1.02254 0.93700 1.22756 0.86691 0.96395 0.93952 0.89046 1.19750 0.80786 0.84185 0.83722 1.90718 1.53456 1.59343 1.36733 1.48412 1.10866 1.35070 1.40161 1.22427 0.88811 0.98396 0.92928 1.23390 0.94366 1.00678 1.00758 1.21291 0.87494 0.94244 0.90626 0.90282 1.43874 1.46110 1.27242 1.13847 1.20893 0.94090 0.93193 0.89929 1.19232 1.00160 0.92892 1.26703 0.91181 1.25155 0.97166 0.97646 0.99116 1.70097 1.25423 1.31499 1.28150 0.86220 0.81102 0.81919 0.77104 1.21339 1.21672 1.20474 1.22797 0.96098 0.87744 0.97036 1.89293 1.25051 1.74266 1.37459 0.91692 0.91120 0.91636 0.90254 0.90197 0.89464 0.90112 0.91494 0.91484 0.90568 0.90304 0.95499 0.92699 0.98619 0.93630 0.92111 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.53 37.16 0.35 -0.84 16 2 C 0.07 0.63 3.92 -25.95 -0.10 0.53 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.15 -1.19 6.64 -25.07 -0.17 -1.36 16 5 C -0.14 -1.37 5.87 -25.07 -0.15 -1.51 16 6 C 0.06 0.82 2.98 -27.11 -0.08 0.74 16 7 H 0.09 1.01 7.68 -51.93 -0.40 0.61 16 8 C 0.53 9.03 7.13 -10.99 -0.08 8.95 16 9 O -0.53 -11.39 16.88 -13.66 -0.23 -11.62 16 10 N -0.61 -9.81 3.33 -170.51 -0.57 -10.38 16 11 C 0.10 1.25 5.82 -2.52 -0.01 1.23 16 12 C -0.15 -2.44 6.65 -24.58 -0.16 -2.60 16 13 C 0.17 3.37 3.44 -66.10 -0.23 3.15 16 14 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 15 N -0.59 -14.32 2.94 -171.39 -0.50 -14.82 16 16 C 0.16 4.00 7.64 59.85 0.46 4.46 16 17 C -0.26 -6.94 9.61 -15.06 -0.14 -7.09 16 18 H 0.07 1.81 7.82 -52.49 -0.41 1.40 16 19 C 0.01 0.21 5.39 -17.43 -0.09 0.11 16 20 N -0.91 -25.81 10.11 55.49 0.56 -25.25 16 21 Si 0.91 21.36 29.56 -169.99 -5.02 16.34 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.09 1.64 6.39 -3.06 -0.02 1.62 16 26 O -0.34 -4.95 10.60 -54.44 -0.58 -5.53 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 30 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.08 0.86 7.86 -51.93 -0.41 0.46 16 34 H 0.07 0.70 7.37 -51.93 -0.38 0.32 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.35 7.28 -51.93 -0.38 0.98 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.70 7.45 -51.93 -0.39 0.31 16 39 H 0.05 1.48 7.01 -51.93 -0.36 1.12 16 40 H 0.00 -0.10 6.27 -51.93 -0.33 -0.43 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.58 6.11 -51.93 -0.32 1.26 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -32.44 337.78 -8.80 -41.24 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.12 Total: -2.44 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.43 Total: 7.38 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.51 Total: -50.45 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.81 Total: -17.16 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.44 -8.80 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972381718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.796 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds